ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CDAN1_HUMAN (Q8IWY9) Codanin-1 30 1.8
2AOC3_ARATH (Q9LS01) Allene oxide cyclase 3, chloroplast precurso... 28 5.1
3AOC4_ARATH (Q93ZC5) Allene oxide cyclase 4, chloroplast precurso... 28 6.7

>CDAN1_HUMAN (Q8IWY9) Codanin-1|
          Length = 1226

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -2

Query: 188 LPQGHPGPAK----GAALHARPAFPHRGANARR 102
           LPQG P PAK     AAL  RP  P RG+   R
Sbjct: 65  LPQGPPTPAKTPGASAALPGRPGGPPRGSRGAR 97



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>AOC3_ARATH (Q9LS01) Allene oxide cyclase 3, chloroplast precursor (EC|
           5.3.99.6)
          Length = 258

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 187 YLKGIP-DLPKELLCXXXXXXXXXXXXPAAKATEPHACLNNFTD 59
           YLKG+  DLP EL              P AKA EP   ++NFT+
Sbjct: 215 YLKGLANDLPLELTGTAVTPSKDVKPAPEAKAMEPSGVISNFTN 258



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>AOC4_ARATH (Q93ZC5) Allene oxide cyclase 4, chloroplast precursor (EC|
           5.3.99.6)
          Length = 254

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 187 YLKGIP-DLPKELLCXXXXXXXXXXXXPAAKATEPHACLNNFTD 59
           YLKG+  DLP EL                A+AT+P A + NFT+
Sbjct: 211 YLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,364,678
Number of Sequences: 219361
Number of extensions: 211465
Number of successful extensions: 567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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