ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HTK7_HYDAT (Q25197) Putative insulin-like peptide receptor precu... 30 2.0
2SYT_PSESM (Q883H9) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon... 29 2.6
3SMO_DROME (P91682) Protein smoothened precursor (dSMO) (SMOH) (S... 29 3.4
4NOX3_MOUSE (Q672J9) NADPH oxidase 3 (EC 1.6.3.-) 28 7.6
5SYT_PSEPK (Q88K27) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon... 27 9.9
6OR82A_DROME (P82986) Putative odorant receptor 82a 27 9.9
7WSB1_HUMAN (Q9Y6I7) WD repeat and SOCS box-containing protein 1 ... 27 9.9

>HTK7_HYDAT (Q25197) Putative insulin-like peptide receptor precursor (EC|
           2.7.10.1)
          Length = 1477

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 195 FCKYIGTARCFHGGLPVKTSEVHTE 121
           FC+Y+    C+HG L VK+++ + E
Sbjct: 49  FCQYLQNCTCWHGNLVVKSTKYYDE 73



to top

>SYT_PSESM (Q883H9) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 640

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 176 PRGVFMEVFL*RRQKYTQKLVASHPDDLLCIIFYH 72
           PR   +EVF  R + Y  +LV   PD+    ++YH
Sbjct: 140 PRAEVIEVFTARHEDYKLRLVEGMPDEQAMGLYYH 174



to top

>SMO_DROME (P91682) Protein smoothened precursor (dSMO) (SMOH) (Smooth)|
          Length = 1036

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 226 CKLIT*PFLLVKLPAHRLRFYYSEQWADS 312
           C L+T  F+LV +  H   F ++++WA S
Sbjct: 478 CALLTLVFILVAIACHVTEFRHADEWAQS 506



to top

>NOX3_MOUSE (Q672J9) NADPH oxidase 3 (EC 1.6.3.-)|
          Length = 568

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 80  ILYIRDHQGEMQLVSVCTSDVFTGRPP 160
           + Y RDH  E Q  ++C    F+G+ P
Sbjct: 239 VTYCRDHYAEWQAAALCPVPQFSGKEP 265



to top

>SYT_PSEPK (Q88K27) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 640

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 197 DSANILGPRGVFMEVFL*RRQKYTQKLVASHPDDLLCIIFYH 72
           D    + PR   ++VF  R + Y  +LV   PD+    ++YH
Sbjct: 133 DVVKKMTPRAEVIDVFKARGEDYKLRLVEDMPDEQAMGLYYH 174



to top

>OR82A_DROME (P82986) Putative odorant receptor 82a|
          Length = 385

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 23  LIMRSIAHLRCLITK*YDKILYIRDHQGEMQLVSVCTSDVFT 148
           L ++ I+ L  +I+  Y  I Y+  ++ +M+ V+ C S VFT
Sbjct: 29  LSLKHISSLIFVISAQYPLISYVAYNRNDMEKVTACLSVVFT 70



to top

>WSB1_HUMAN (Q9Y6I7) WD repeat and SOCS box-containing protein 1 (WSB-1) (SOCS|
           box-containing WD protein SWiP-1)
          Length = 421

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 227 QDLVWSCLETDSANILGPRGVFMEVFL*RRQKYT--QKLVASHPDDLLC 87
           Q+ V+SC  +  +++L   G    VFL    KYT  +KL   H D + C
Sbjct: 214 QNWVYSCAFSPDSSMLCSVGASKAVFLWNMDKYTMIRKLEGHHHDVVAC 262


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,605,089
Number of Sequences: 219361
Number of extensions: 741299
Number of successful extensions: 1194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top