ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106783.1| Zea mays PCO103251 mRNA sequence 66 7e-08
2dbj|AK070667.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
3dbj|AK060097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
5dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
6gb|AC021631.6|AC021631 Mus musculus, clone RP23-38J11, complete ... 50 0.004
7gb|AC101852.7| Mus musculus chromosome 1, clone RP23-279P3, comp... 44 0.27
8emb|AL359012.7| Human DNA sequence from clone RP11-339I10 on chr... 44 0.27
9emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome 44 0.27
10gb|AC158962.4| Mus musculus chromosome 1, clone RP23-443N21, com... 44 0.27
11gb|AC161283.2| Pan troglodytes BAC clone CH251-354N8 from chromo... 42 1.0
12gb|AC146451.3| Pan troglodytes BAC clone RP43-1L21 from 7, compl... 42 1.0
13emb|AL137250.17| Human DNA sequence from clone RP11-347L8 on chr... 42 1.0
14gb|AC012417.13| Homo sapiens chromosome 18, clone RP11-408H20, c... 42 1.0
15gb|AF293358.1|AF293358 Homo sapiens desmocollin 1 (DSC1) gene, c... 42 1.0
16gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome... 40 4.1
17gb|AC136999.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.1
18gb|AC142448.3| Mus musculus BAC clone RP24-540M5 from chromosome... 40 4.1
19gb|AE014821.1| Plasmodium falciparum 3D7 chromosome 14 section 6... 40 4.1
20emb|AL031679.1|HS836E8 Human DNA sequence from clone RP5-836E8 o... 40 4.1
21gb|AC125165.5| Mus musculus BAC clone RP24-429K13 from chromosom... 40 4.1
22gb|AC009139.8| Homo sapiens chromosome 16 clone RP11-538I12, com... 40 4.1
23gb|AC108211.3| Homo sapiens BAC clone RP11-511I14 from 4, comple... 40 4.1
24gb|AC007119.6| Arabidopsis thaliana chromosome 2 clone F2G1 map ... 40 4.1
25gb|AC008819.7| Homo sapiens chromosome 5 clone CTD-2126M20, comp... 40 4.1
26gb|AC091977.3| Homo sapiens chromosome 5 clone RP11-528L24, comp... 40 4.1
27gb|AC034238.4| Homo sapiens chromosome 5 clone CTD-2313F11, comp... 40 4.1
28gb|AC009532.9| Homo sapiens chromosome , clone RP11-58H20, compl... 40 4.1
29dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
30gb|AC010548.10| Homo sapiens chromosome 16 clone RP11-518I8, com... 40 4.1
31gb|AC102448.15| Mus musculus chromosome 3, clone RP24-209L5, com... 40 4.1
32gb|AC124762.4| Mus musculus BAC clone RP23-155A10 from 6, comple... 40 4.1
33emb|CR974469.7| Zebrafish DNA sequence from clone CH73-64N5 in l... 40 4.1
34gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 4.1
35gb|AC148372.3| Carollia perspicillata clone 102I5, complete sequ... 40 4.1
36emb|CT030251.8| Mouse DNA sequence from clone RP24-284K11 on chr... 40 4.1
37emb|CR388001.36| Zebrafish DNA sequence from clone CH211-279I17 ... 40 4.1
38emb|CT010571.7| Mouse DNA sequence from clone RP23-300L8 on chro... 40 4.1
39gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 40 4.1 
>gb|AY106783.1| Zea mays PCO103251 mRNA sequence
          Length = 1172

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 236 ttacatagccatttctgcttgtaaagctgccagctcatcgtcttcggttttactactctg 295
           |||||||||||||||||| ||||  ||||||||||| |||||||| | ||| ||||||||
Sbjct: 865 ttacatagccatttctgcctgtagtgctgccagctcgtcgtcttcagctttgctactctg 806

            
Query: 296 a 296
           |
Sbjct: 805 a 805
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>dbj|AK070667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056L17, full
           insert sequence
          Length = 1366

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 229 aaactaattacatagccatttctgcttgtaaagctgccagctcatcgtcttcggttttac 288
           ||||||||||||||||||| ||||| || |||||||||| ||| || ||||| ||||| |
Sbjct: 891 aaactaattacatagccatctctgcctgcaaagctgccaactcgtcatcttcagttttgc 832

                       
Query: 289 tactctgagcag 300
           | ||||| ||||
Sbjct: 831 tgctctgggcag 820
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>dbj|AK060097.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G05, full
           insert sequence
          Length = 1139

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 229 aaactaattacatagccatttctgcttgtaaagctgccagctcatcgtcttcggttttac 288
           ||||||||||||||||||| ||||| || |||||||||| ||| || ||||| ||||| |
Sbjct: 908 aaactaattacatagccatctctgcctgcaaagctgccaactcgtcatcttcagttttgc 849

                       
Query: 289 tactctgagcag 300
           | ||||| ||||
Sbjct: 848 tgctctgggcag 837
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                            
Query: 232      ctaattacatagccatttctgcttgtaaagctgccagctcatcgtcttcggttttactac 291
                |||||||||||||||| ||||| || |||||||||| ||| || ||||| ||||| || |
Sbjct: 23839033 ctaattacatagccatctctgcctgcaaagctgccaactcgtcatcttcagttttgctgc 23838974

                         
Query: 292      tctgagcag 300
                |||| ||||
Sbjct: 23838973 tctgggcag 23838965
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>dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0556B08
          Length = 136775

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                         
Query: 232   ctaattacatagccatttctgcttgtaaagctgccagctcatcgtcttcggttttactac 291
             |||||||||||||||| ||||| || |||||||||| ||| || ||||| ||||| || |
Sbjct: 78698 ctaattacatagccatctctgcctgcaaagctgccaactcgtcatcttcagttttgctgc 78639

                      
Query: 292   tctgagcag 300
             |||| ||||
Sbjct: 78638 tctgggcag 78630
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>gb|AC021631.6|AC021631 Mus musculus, clone RP23-38J11, complete sequence
          Length = 160618

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 73    tgataaaatattatacataagagat 97
             |||||||||||||||||||||||||
Sbjct: 48141 tgataaaatattatacataagagat 48117
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>gb|AC101852.7| Mus musculus chromosome 1, clone RP23-279P3, complete sequence
          Length = 185975

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 72    atgataaaatattatacataag 93
             ||||||||||||||||||||||
Sbjct: 47544 atgataaaatattatacataag 47523
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>emb|AL359012.7| Human DNA sequence from clone RP11-339I10 on chromosome 13 Contains ESTs,
              STSs and GSSs, complete sequence
          Length = 176446

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 65     aagtaatatgataaaatattat 86
              ||||||||||||||||||||||
Sbjct: 161806 aagtaatatgataaaatattat 161827
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>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 73     tgataaaatattatacataaga 94
              ||||||||||||||||||||||
Sbjct: 469437 tgataaaatattatacataaga 469458
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>gb|AC158962.4| Mus musculus chromosome 1, clone RP23-443N21, complete sequence
          Length = 180337

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 72     atgataaaatattatacataag 93
              ||||||||||||||||||||||
Sbjct: 112241 atgataaaatattatacataag 112262
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>gb|AC161283.2| Pan troglodytes BAC clone CH251-354N8 from chromosome 7, complete
             sequence
          Length = 160292

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 64    aaagtaatatgataaaatattatacataa 92
             |||||| ||||||||||||||||| ||||
Sbjct: 95474 aaagtattatgataaaatattatatataa 95446
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>gb|AC146451.3| Pan troglodytes BAC clone RP43-1L21 from 7, complete sequence
          Length = 161524

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 234    aattacatagccatttctgct 254
              |||||||||||||||||||||
Sbjct: 160245 aattacatagccatttctgct 160265
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>emb|AL137250.17| Human DNA sequence from clone RP11-347L8 on chromosome 13, complete
             sequence
          Length = 110733

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 67    gtaatatgataaaatattatacata 91
             ||||||||||| |||||||||||||
Sbjct: 91580 gtaatatgatataatattatacata 91556
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>gb|AC012417.13| Homo sapiens chromosome 18, clone RP11-408H20, complete sequence
          Length = 181552

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    atatgataaaatattatacat 90
             |||||||||||||||||||||
Sbjct: 41175 atatgataaaatattatacat 41195
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>gb|AF293358.1|AF293358 Homo sapiens desmocollin 1 (DSC1) gene, complete cds, alternatively
             spliced
          Length = 33297

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    atatgataaaatattatacat 90
             |||||||||||||||||||||
Sbjct: 14256 atatgataaaatattatacat 14276
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>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06,
              complete sequence
          Length = 143130

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 60     ttacaaagtaatatgataaaatat 83
              |||||||||||||| |||||||||
Sbjct: 104724 ttacaaagtaatataataaaatat 104747
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>gb|AC136999.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0009L15, complete sequence
          Length = 137570

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 60    ttacaaagtaatatgataaaatat 83
             |||||||||||||| |||||||||
Sbjct: 23281 ttacaaagtaatataataaaatat 23304
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>gb|AC142448.3| Mus musculus BAC clone RP24-540M5 from chromosome 18, complete sequence
          Length = 170302

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    aatattatacataagagatc 98
             ||||||||||||||||||||
Sbjct: 45414 aatattatacataagagatc 45433
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>gb|AE014821.1| Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete
             sequence
          Length = 250823

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    taatatgataaaatattata 87
             ||||||||||||||||||||
Sbjct: 99936 taatatgataaaatattata 99917
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>emb|AL031679.1|HS836E8 Human DNA sequence from clone RP5-836E8 on chromosome 20p12 Contains a
              FUSIP1 pseudogene (pFUSIP1) and a CpG island, complete
              sequence
          Length = 119296

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 75     ataaaatattatacataagagatc 98
              ||||||||||||||||||| ||||
Sbjct: 116117 ataaaatattatacataagggatc 116094
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>gb|AC125165.5| Mus musculus BAC clone RP24-429K13 from chromosome 16, complete sequence
          Length = 156815

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    ggtcccaatatatttgcaga 194
              ||||||||||||||||||||
Sbjct: 118736 ggtcccaatatatttgcaga 118717
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>gb|AC009139.8| Homo sapiens chromosome 16 clone RP11-538I12, complete sequence
          Length = 178058

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     gattacaaagtaatatgata 77
              ||||||||||||||||||||
Sbjct: 106986 gattacaaagtaatatgata 107005
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>gb|AC108211.3| Homo sapiens BAC clone RP11-511I14 from 4, complete sequence
          Length = 222457

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     atatgataaaatattataca 89
              ||||||||||||||||||||
Sbjct: 163982 atatgataaaatattataca 164001
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>gb|AC007119.6| Arabidopsis thaliana chromosome 2 clone F2G1 map mi238, complete
             sequence
          Length = 54433

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    tgtttgattacaaagtaata 72
             ||||||||||||||||||||
Sbjct: 39975 tgtttgattacaaagtaata 39956
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>gb|AC008819.7| Homo sapiens chromosome 5 clone CTD-2126M20, complete sequence
          Length = 116845

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 66    agtaatatgataaaatattataca 89
             ||||||||||| ||||||||||||
Sbjct: 12334 agtaatatgatgaaatattataca 12357
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>gb|AC091977.3| Homo sapiens chromosome 5 clone RP11-528L24, complete sequence
          Length = 183494

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    agtaatatgataaaatattataca 89
             ||||||||||| ||||||||||||
Sbjct: 10470 agtaatatgatgaaatattataca 10447
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>gb|AC034238.4| Homo sapiens chromosome 5 clone CTD-2313F11, complete sequence
          Length = 117583

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    agtaatatgataaaatattataca 89
             ||||||||||| ||||||||||||
Sbjct: 79556 agtaatatgatgaaatattataca 79533
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>gb|AC009532.9| Homo sapiens chromosome , clone RP11-58H20, complete sequence
          Length = 165698

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 234   aattacatagccatttctgcttgt 257
             |||||||||||||||||| |||||
Sbjct: 40537 aattacatagccatttctacttgt 40560
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 60       ttacaaagtaatatgataaaatat 83
                |||||||||||||| |||||||||
Sbjct: 16892238 ttacaaagtaatataataaaatat 16892261
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>gb|AC010548.10| Homo sapiens chromosome 16 clone RP11-518I8, complete sequence
          Length = 206466

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     gattacaaagtaatatgata 77
              ||||||||||||||||||||
Sbjct: 180717 gattacaaagtaatatgata 180698
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>gb|AC102448.15| Mus musculus chromosome 3, clone RP24-209L5, complete sequence
          Length = 159371

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    aatattatacataagagatc 98
             ||||||||||||||||||||
Sbjct: 35827 aatattatacataagagatc 35808
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>gb|AC124762.4| Mus musculus BAC clone RP23-155A10 from 6, complete sequence
          Length = 199207

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     aaagtaatatgataaaatat 83
              ||||||||||||||||||||
Sbjct: 125768 aaagtaatatgataaaatat 125787
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>emb|CR974469.7| Zebrafish DNA sequence from clone CH73-64N5 in linkage group 22, complete
              sequence
          Length = 105360

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     caaagtaatatgataaaata 82
              ||||||||||||||||||||
Sbjct: 101342 caaagtaatatgataaaata 101361
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 264     gccagctcatcgtcttcggt 283
               ||||||||||||||||||||
Sbjct: 2049237 gccagctcatcgtcttcggt 2049218
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>gb|AC148372.3| Carollia perspicillata clone 102I5, complete sequence
          Length = 161035

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    taatatgataaaatattatacata 91
             ||||||||| ||||||||||||||
Sbjct: 87773 taatatgatgaaatattatacata 87750
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>emb|CT030251.8| Mouse DNA sequence from clone RP24-284K11 on chromosome 16, complete
             sequence
          Length = 186902

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   ggtcccaatatatttgcaga 194
             ||||||||||||||||||||
Sbjct: 75063 ggtcccaatatatttgcaga 75044
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>emb|CR388001.36| Zebrafish DNA sequence from clone CH211-279I17 in linkage group 22,
            complete sequence
          Length = 123028

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   caaagtaatatgataaaata 82
            ||||||||||||||||||||
Sbjct: 9595 caaagtaatatgataaaata 9614
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>emb|CT010571.7| Mouse DNA sequence from clone RP23-300L8 on chromosome 16, complete
              sequence
          Length = 218760

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    ggtcccaatatatttgcaga 194
              ||||||||||||||||||||
Sbjct: 191826 ggtcccaatatatttgcaga 191807
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>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 68      taatatgataaaatattatacata 91
               ||||||||| ||||||||||||||
Sbjct: 1428241 taatatgatgaaatattatacata 1428218


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,889,863
Number of Sequences: 3902068
Number of extensions: 2889863
Number of successful extensions: 63033
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62887
Number of HSP's gapped (non-prelim): 146
length of query: 315
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 293
effective length of database: 17,147,199,772
effective search space: 5024129533196
effective search space used: 5024129533196
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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