ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart61d06 |
|---|---|
| Clone Library Name | barley_pub |
>IORA_BREDI (Q51697) Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16)| Length = 152 Score = 33.1 bits (74), Expect = 0.17 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = +1 Query: 145 VHFNGSPGKNMLVFLQKHPMQMVTTTTNHHGGPAHSPPRSWLAERCRAPDCCGSGQ 312 VH NG ++ + L Q VTT AH R+W+AE+ C SGQ Sbjct: 49 VHINGEAARSCITPLSVVARQSVTTIEGLDPQHAHPLQRAWIAEQVPQCGYCQSGQ 104
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Frame = +1 Query: 238 GPAHSPPRSWLAERCRAP-----------DCCGSGQREGTTRSRMTSPHTQLFVASPQMT 384 GPAH PR L R R P G+T SR TS T+ SP+ T Sbjct: 137 GPAHDLPRRPLRRRHRKPGHRRRTSTTSTSASSGSSSAGSTGSRWTSASTRGASTSPRAT 196 Query: 385 P 387 P Sbjct: 197 P 197
>VGLB_HHV2H (P08666) Glycoprotein B precursor| Length = 904 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = +1 Query: 244 AHSPPRSWLAERCRAPDCCGSGQREGTTRSRMTSPHTQLFVASPQMT 384 +H+ S+ A+R + D G R+ TT++R TSP T+ + +P+ T Sbjct: 302 SHTEHTSYAADRFKQVD--GFYARDLTTKARATSPTTRNLLTTPKFT 346
>VGLB_HHV23 (P06763) Glycoprotein B precursor| Length = 904 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = +1 Query: 244 AHSPPRSWLAERCRAPDCCGSGQREGTTRSRMTSPHTQLFVASPQMT 384 +H+ S+ A+R + D G R+ TT++R TSP T+ + +P+ T Sbjct: 302 SHTEHTSYAADRFKQVD--GFYARDLTTKARATSPTTRNLLTTPKFT 346
>YAV2_XANCV (P14728) Hypothetical 82 kDa avirulence protein in avrBs3 region| Length = 784 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 223 TNHHGGPAHSPPRSWLAERCRAPDCC 300 +N +GGP +SP A R RAPD C Sbjct: 740 SNCNGGPLNSPATVSKASRARAPDHC 765
>TRSF_DROHY (Q23949) Female-specific protein transformer| Length = 201 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +1 Query: 187 LQKHPMQMVTTTTNHHGGPAHSPPRSWLAERCRAPDCCGSGQREGTTRSRMTSPHTQLFV 366 L+ + TT+H G P + RS+ AER +CC +R + R + +L Sbjct: 39 LRHRKTSITRPTTSHRGRPMRARSRSYSAER----NCCQRRRRSRSCERRHSDTRHKLTT 94 Query: 367 AS 372 A+ Sbjct: 95 AT 96
>PHK2_RHIME (Q92ZA4) Probable phosphoketolase 2 (EC 4.1.2.-)| Length = 779 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%) Frame = +1 Query: 139 ILVHFNGSPGKNMLV-----FLQKHPMQMVTTTTNHHGGP 243 +L H+ +PG N L +Q H + M+ T HGGP Sbjct: 37 LLGHWGTTPGLNFLYVHLNRLIQTHDLNMIYVTGPGHGGP 76
>VGLB_HHV1F (P06436) Glycoprotein B precursor| Length = 903 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/47 (31%), Positives = 28/47 (59%) Frame = +1 Query: 244 AHSPPRSWLAERCRAPDCCGSGQREGTTRSRMTSPHTQLFVASPQMT 384 +H+ S+ A+R + D G R+ TT++R T+P T+ + +P+ T Sbjct: 306 SHTEHTSYAADRFKQVD--GFYARDLTTKARATAPTTRNLLTTPKFT 350
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Frame = +1 Query: 190 QKHPMQMVTTTTNHHGGPAHSPPRSWLAERCRAPDCCGSGQREGTTRSRMTSPHTQL--F 363 Q+HP HHGGPA PP AP+ G +E T PH + Sbjct: 101 QQHPPPPHMQQQQHHGGPAPPPPGG-------APE-HAPGVKEEYTHLPPPHPHPAYGRY 152 Query: 364 VASPQMTP 387 A P M P Sbjct: 153 HADPNMDP 160
>VGLE_PRVRI (P08354) Glycoprotein GI precursor| Length = 577 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +3 Query: 174 YVGIPAETPYADGDDDDESS 233 Y +P Y DGDDDDE + Sbjct: 478 YTSLPTHEDYYDGDDDDEEA 497
>VGLB_HHV1P (P08665) Glycoprotein B precursor| Length = 904 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/47 (31%), Positives = 28/47 (59%) Frame = +1 Query: 244 AHSPPRSWLAERCRAPDCCGSGQREGTTRSRMTSPHTQLFVASPQMT 384 +H+ S+ A+R + D G R+ TT++R T+P T+ + +P+ T Sbjct: 307 SHTEHTSYAADRFKQVD--GFYARDLTTKARATAPTTRNLLTTPKFT 351
>VGLB_HHV11 (P10211) Glycoprotein B precursor| Length = 904 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/47 (31%), Positives = 28/47 (59%) Frame = +1 Query: 244 AHSPPRSWLAERCRAPDCCGSGQREGTTRSRMTSPHTQLFVASPQMT 384 +H+ S+ A+R + D G R+ TT++R T+P T+ + +P+ T Sbjct: 307 SHTEHTSYAADRFKQVD--GFYARDLTTKARATAPTTRNLLTTPKFT 351
>O5AV1_HUMAN (Q8NHC6) Olfactory receptor 5AV1| Length = 308 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 6 ASQPQFSFAFLLTFFTVVPPNINP 77 ++ P FL F+TVVPP +NP Sbjct: 265 SNSPPVLDVFLSAFYTVVPPTLNP 288
>O52E6_HUMAN (Q96RD3) Olfactory receptor 52E6| Length = 313 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 15 PQFSFAFLLTFFTVVPPNINP 77 PQ+ FL + VVPP +NP Sbjct: 270 PQYIHIFLANLYVVVPPTLNP 290
>AOC3_MOUSE (O70423) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) Length = 764 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Frame = +1 Query: 124 INRCIILVHFNGSPGKN---MLVFLQKHPMQMVTTTTNHHGGP 243 + + ++ F G P N ++V HP M T HGGP Sbjct: 120 VREALAIIFFGGQPKPNVSELVVGPLPHPSYMRDVTVERHGGP 162
>FIG4_YEAST (P42837) Polyphosphoinositide phosphatase (EC 3.1.3.-)| (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase) (Factor-induced gene 4) Length = 879 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +1 Query: 166 GKNMLVFLQKHPMQMVTTTTNHHGGP 243 G+ ++ FL+K+ + VTTT H GP Sbjct: 426 GQGVIEFLEKYAVNTVTTTGIFHNGP 451
>RPOB_CAMJR (Q5HVY9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1378 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = -3 Query: 319 PHVDHYRSNPGLYTSQLTNFLEDCVLARRD 230 P +DHY L T+Q TN+++ ++ + D Sbjct: 757 PFIDHYTMEKNLRTNQNTNYIQHPIVKKGD 786
>RPOB_CAMJE (Q46124) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1378 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = -3 Query: 319 PHVDHYRSNPGLYTSQLTNFLEDCVLARRD 230 P +DHY L T+Q TN+++ ++ + D Sbjct: 757 PFIDHYTMEKNLRTNQNTNYIQHPIVKKGD 786
>AOC3_RAT (O08590) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) (VP97) Length = 762 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Frame = +1 Query: 124 INRCIILVHFNGSPGKN---MLVFLQKHPMQMVTTTTNHHGGP 243 + + ++ F G P N ++V HP M T HGGP Sbjct: 120 VREALAIIFFGGQPKPNVSELVVGPLPHPSYMRDVTVERHGGP 162
>NAB2_MOUSE (Q61127) NGFI-A-binding protein 2 (EGR-1-binding protein 2)| Length = 525 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Frame = +1 Query: 154 NGSPGK---NMLVFLQKHPMQMVTTTTNHHGGPAHSPPRSWLAERCRAPDCCGSGQRE 318 +GSPG+ + F K P+++ + GGP PR W + D G+ E Sbjct: 145 HGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAGDPRIWPGQSTPESDVGAGGEEE 202
>ASPM_SAIBB (P62296) Abnormal spindle-like microcephaly-associated protein| homolog Length = 3469 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 244 AHSPPRSWLAERCRAPDCCGSGQREGTTRS 333 A SPP +L+ CR+P C R GT+R+ Sbjct: 33 AASPPVLFLSHFCRSPFLCFGDVRLGTSRT 62
>YUXL_BACSU (P39839) Probable peptidase yuxL (EC 3.4.21.-)| Length = 657 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +1 Query: 157 GSPGKNMLVFLQKHPMQMVTTTTNHHGGPAHSPPRSWL 270 G+ + +LV ++ M+ +T+ HG PA SP WL Sbjct: 166 GAYAQLVLVSVKSGEMKELTSHKADHGDPAFSPDGKWL 203
>PHK_RHOPA (Q6N976) Probable phosphoketolase (EC 4.1.2.-)| Length = 783 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Frame = +1 Query: 139 ILVHFNGSPGKNMLV-----FLQKHPMQMVTTTTNHHGGP 243 +L H+ +PG N+L + +H + M+ T HGGP Sbjct: 49 LLGHWGTTPGLNLLYVHLNRLITEHDLDMIYITGPGHGGP 88
>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (p75) Length = 707 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +1 Query: 238 GPAHSPPRSWLAERCRAPD 294 GP H PPR+ + E R PD Sbjct: 135 GPIHPPPRTSMTEEYRVPD 153
>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (MAP2 RNA trans-acting protein 1) (MARTA1) Length = 721 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +1 Query: 238 GPAHSPPRSWLAERCRAPD 294 GP H PPR+ + E R PD Sbjct: 136 GPIHPPPRTSMTEEYRVPD 154
>HSF2_MOUSE (P38533) Heat shock factor protein 2 (HSF 2) (Heat shock| transcription factor 2) (HSTF 2) Length = 535 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +1 Query: 139 ILVHFNGSPGKNMLVFLQKHPMQMVTTTTNHHGGPAHS 252 +L++ NG+P KN+ + K P T NHH HS Sbjct: 200 LLLNTNGAPKKNLYQHIVKEP------TDNHHHKVPHS 231
>POLN_SINDO (P27283) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2514 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +3 Query: 132 LYNPGTFQWITRKKYVGIPAETPYADGDDDDESSRRAST 248 L+NP T ++ +KY+ +P E P A D+E+ +T Sbjct: 1658 LFNPHTPAFVPARKYIEVP-EQPAAPPAQDEEAPEAVAT 1695 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,678,709 Number of Sequences: 219361 Number of extensions: 1068231 Number of successful extensions: 2787 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2733 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2785 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
