ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATM_ASPOR (Q2U639) Serine/threonine-protein kinase tel1 (EC 2.7.... 28 4.4

>ATM_ASPOR (Q2U639) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase tel1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2925

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 203 HRSIDHRAHALLLSLPNTIHPFGYISCWEXXXXXXXXXXXXXLSSSVRA 57
           H S+D ++  LL  LPN +   G ++ W               S S+RA
Sbjct: 458 HASVDSKSSLLLRLLPNILDENGILASWTMITIASLAGSPNADSPSLRA 506


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,172,622
Number of Sequences: 219361
Number of extensions: 804946
Number of successful extensions: 1550
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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