Clone Name | rbart61d01 |
---|---|
Clone Library Name | barley_pub |
>gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intrinsic protein mRNA, complete cds Length = 1067 Score = 91.7 bits (46), Expect = 6e-16 Identities = 90/104 (86%), Gaps = 8/104 (7%) Strand = Plus / Minus Query: 26 gcttcaatctgaaccaaacaacatgacgttcttcacatcatcgaaacatt-------ctg 78 ||||| ||||||||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 932 gcttcgatctgaaccaaacaacaggatgttcttcacatcatcgaaacattcgtgagactg 873 Query: 79 accaccacgcacgcacttttttatgttgccgaaggcatcatgga 122 |||||||| |||||| ||||||||||||||||||||| ||||| Sbjct: 872 cccaccacgtacgcac-tttttatgttgccgaaggcattatgga 830
>gb|AC006012.2| Homo sapiens PAC clone RP5-942I16 from 7, complete sequence Length = 121598 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ggcatcatggaaaccaaaca 131 |||||||||||||||||||| Sbjct: 113843 ggcatcatggaaaccaaaca 113824
>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete sequence Length = 222430 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tctgaaccaaacaacatgac 52 |||||||||||||||||||| Sbjct: 111593 tctgaaccaaacaacatgac 111574
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tctgaaccaaacaacatgac 52 |||||||||||||||||||| Sbjct: 1893522 tctgaaccaaacaacatgac 1893503
>emb|AL355137.23| Human DNA sequence from clone RP11-511D14 on chromosome 6p23-24.3 Contains the gene for a novel protein isentical to ribosomal protein L15 (RPL15), complete sequence Length = 190223 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 109 gaaggcatcatggaaacca 127 ||||||||||||||||||| Sbjct: 98391 gaaggcatcatggaaacca 98373
>gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169124 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 acgcacgcacttttttatg 103 ||||||||||||||||||| Sbjct: 63139 acgcacgcacttttttatg 63121
>gb|AC023694.4| Drosophila melanogaster X BAC RP98-18B11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170301 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 acgcacgcacttttttatg 103 ||||||||||||||||||| Sbjct: 105314 acgcacgcacttttttatg 105296
>gb|AC154609.2| Mus musculus BAC clone RP23-334N13 from 16, complete sequence Length = 202556 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 114 catcatggaaaccaaacaccgaa 136 |||| |||||||||||||||||| Sbjct: 183434 catcttggaaaccaaacaccgaa 183456
>gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 of 74 of the complete sequence Length = 307201 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 acgcacgcacttttttatg 103 ||||||||||||||||||| Sbjct: 295141 acgcacgcacttttttatg 295123 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,382,023 Number of Sequences: 3902068 Number of extensions: 1382023 Number of successful extensions: 101697 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101668 Number of HSP's gapped (non-prelim): 28 length of query: 155 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 133 effective length of database: 17,147,199,772 effective search space: 2280577569676 effective search space used: 2280577569676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)