ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CER1_HUMAN (O95813) Cerberus precursor (Cerberus-related protein) 32 0.39
2MATK_DROLU (Q5J2U8) Maturase K (Intron maturase) 29 2.5
3YR224_MIMIV (Q5UQB7) Putative BTB/POZ domain-containing protein ... 28 4.3
4GAOX1_ORYSA (P93771) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gi... 28 4.3

>CER1_HUMAN (O95813) Cerberus precursor (Cerberus-related protein)|
          Length = 267

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 339 FNPGSDAMVEPLEEMVSDERPARYDAYNWGHFFSTRK 229
           F PG+ ++++P++ M  ++ P R +A  + H F  RK
Sbjct: 105 FPPGTQSLIQPIDGMKMEKSPLREEAKKFWHHFMFRK 141



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>MATK_DROLU (Q5J2U8) Maturase K (Intron maturase)|
          Length = 514

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 270 YDAYNWGHFFSTRKNSNFKK 211
           Y+++NW  FFS +KN +F K
Sbjct: 183 YESHNWNSFFSLKKNISFLK 202



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>YR224_MIMIV (Q5UQB7) Putative BTB/POZ domain-containing protein R224|
          Length = 540

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 142 ESAKIHSKVELSEVCDLYVFDV 207
           E + IH+K+    VCD+YV+D+
Sbjct: 206 EFSSIHNKIIYHHVCDIYVYDL 227



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>GAOX1_ORYSA (P93771) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20|
           oxidase 1) (GA 20-oxidase 1) (Os20ox)
          Length = 372

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 333 PGSDAMVEPLEEMVSDERPARYDAYNW 253
           P  D +V P EE+V D  P  Y  + W
Sbjct: 309 PEMDTVVRPPEELVDDHHPRVYPDFTW 335


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,356,258
Number of Sequences: 219361
Number of extensions: 562000
Number of successful extensions: 1384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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