ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ANG1_EMENI (Q00746) Antigen 1 precursor (ASPND1) 29 3.2
2CN113_HUMAN (Q9NXV8) Protein C14orf113 28 5.5
3RRF_VIBVY (Q7MIG3) Ribosome recycling factor (Ribosome-releasing... 28 7.1
4TNR22_MOUSE (Q9ER62) Tumor necrosis factor receptor superfamily ... 28 7.1

>ANG1_EMENI (Q00746) Antigen 1 precursor (ASPND1)|
          Length = 277

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
 Frame = -2

Query: 107 NAKFDCWGGNWRGE----ENIICPTS 42
           N   + WGG+WRGE    E +IC  S
Sbjct: 113 NCALEGWGGHWRGENASDETVICELS 138



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>CN113_HUMAN (Q9NXV8) Protein C14orf113|
          Length = 159

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 1   RNNEGCIGASRIH*LVGQIIFSSPLQFPPQQ 93
           RNN GC+  SR   L  +I  + PLQF  +Q
Sbjct: 30  RNNNGCLPCSRCSELSVEITRTPPLQFEGKQ 60



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>RRF_VIBVY (Q7MIG3) Ribosome recycling factor (Ribosome-releasing factor)|
           (RRF)
          Length = 185

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 81  PSPTVKLSITYFWFLRPLTQVASRVAKNAR 170
           PS    +S+ Y+    PLTQVA+ +A++AR
Sbjct: 34  PSLLSGISVDYYGAATPLTQVANVIAEDAR 63



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>TNR22_MOUSE (Q9ER62) Tumor necrosis factor receptor superfamily member 22|
           (Tumor necrosis factor receptor p60 homolog 2) (TNF
           receptor family member SOBa) (Decoy TRAIL receptor 2)
           (TNF receptor homolog 2)
          Length = 198

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -3

Query: 220 CWPSNNCVKHVMLMQSCRAFLATRLATCVSGLKNQKYVMLS 98
           C P   C + + ++Q C +   T  ++ VS  +N+ +++LS
Sbjct: 141 CRPCTKCPQGIPVLQECNSTANTVCSSSVSNPRNRLFLLLS 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,969,036
Number of Sequences: 219361
Number of extensions: 961596
Number of successful extensions: 2161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2161
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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