ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY158342.1| Trypanosoma brucei farnesyl pyrophosphate synthas... 44 0.21
2emb|BX936293.11| Platypus DNA sequence from clone XX-516O5, comp... 42 0.83
3ref|NM_189671.1| Oryza sativa (japonica cultivar-group), predic... 40 3.3
4gb|AY459339.1| Oryza sativa (japonica cultivar-group) clone CL00... 40 3.3
5emb|AL359390.14| Human DNA sequence from clone RP11-139E24 on ch... 40 3.3
6gb|AF474135.1| Oryza sativa typical P-type R2R3 Myb protein gene... 40 3.3
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
8dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
9dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3

>gb|AY158342.1| Trypanosoma brucei farnesyl pyrophosphate synthase gene, partial
          cds
          Length = 1101

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 13 gtttctgctcgaagaactggaa 34
          ||||||||||||||||||||||
Sbjct: 45 gtttctgctcgaagaactggaa 66



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>emb|BX936293.11| Platypus DNA sequence from clone XX-516O5, complete sequence
          Length = 178175

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 74    aggtgatcaggattcaagaaccaca 98
             |||||||||||||||||||| ||||
Sbjct: 61922 aggtgatcaggattcaagaaacaca 61946



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>ref|NM_189671.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 795

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 226 tgacaaggtcgggtcgagagggtagtag 253
           ||||||| |||| |||||||||||||||
Sbjct: 780 tgacaagctcggatcgagagggtagtag 753



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>gb|AY459339.1| Oryza sativa (japonica cultivar-group) clone CL005170.5 R2R3-MYB gene
            region
          Length = 9432

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 226  tgacaaggtcgggtcgagagggtagtag 253
            ||||||| |||| |||||||||||||||
Sbjct: 1284 tgacaagctcggatcgagagggtagtag 1311



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>emb|AL359390.14| Human DNA sequence from clone RP11-139E24 on chromosome 1, complete
            sequence
          Length = 83750

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    agtggcacaaagtttctgct 21
            ||||||||||||||||||||
Sbjct: 8715 agtggcacaaagtttctgct 8734



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>gb|AF474135.1| Oryza sativa typical P-type R2R3 Myb protein gene, complete cds
          Length = 1507

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 226 tgacaaggtcgggtcgagagggtagtag 253
           ||||||| |||| |||||||||||||||
Sbjct: 52  tgacaagctcggatcgagagggtagtag 79



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 226     tgacaaggtcgggtcgagagggtagtag 253
               ||||||| |||| |||||||||||||||
Sbjct: 4917138 tgacaagctcggatcgagagggtagtag 4917165



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>dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0671B11
          Length = 168372

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 226   tgacaaggtcgggtcgagagggtagtag 253
             ||||||| |||| |||||||||||||||
Sbjct: 17591 tgacaagctcggatcgagagggtagtag 17618



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>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 226    tgacaaggtcgggtcgagagggtagtag 253
              ||||||| |||| |||||||||||||||
Sbjct: 161787 tgacaagctcggatcgagagggtagtag 161814


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,608,122
Number of Sequences: 3902068
Number of extensions: 1608122
Number of successful extensions: 25684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25664
Number of HSP's gapped (non-prelim): 20
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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