ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BAI2_HUMAN (O60241) Brain-specific angiogenesis inhibitor 2 prec... 30 1.1
2AFRP_STRGR (Q9ZN78) A-factor receptor protein (A-factor-binding ... 30 1.1
3CFTR_DIDMA (Q2QL74) Cystic fibrosis transmembrane conductance re... 28 7.0
4HSLU_LACPL (Q88W26) ATP-dependent hsl protease ATP-binding subun... 28 7.0
5CFTR_TRIVU (Q5D1Z7) Cystic fibrosis transmembrane conductance re... 28 7.0
6RS3_METAC (Q8TRU1) 30S ribosomal protein S3P 27 9.1
7HSLU_AZOSE (Q5P503) ATP-dependent hsl protease ATP-binding subun... 27 9.1

>BAI2_HUMAN (O60241) Brain-specific angiogenesis inhibitor 2 precursor|
          Length = 1572

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 228  TMPATTPGSTTEAASISRSILRCSD 154
            TMP T PGST +  S+ R  LR SD
Sbjct: 1432 TMPRTVPGSTMKMGSLERKKLRYSD 1456



to top

>AFRP_STRGR (Q9ZN78) A-factor receptor protein (A-factor-binding protein)|
          Length = 276

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 194 SVVEPGVVAGIVPTGRVGDHVADEEPAERASEQPR 298
           S+  PGV+A I P GRV       E AER  ++ R
Sbjct: 183 SIAHPGVIAHIKPEGRVDLAAQAREKAEREEQEAR 217



to top

>CFTR_DIDMA (Q2QL74) Cystic fibrosis transmembrane conductance regulator (CFTR)|
           (cAMP-dependent chloride channel) (ATP-binding cassette
           transporter sub-family C member 7)
          Length = 1482

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = -1

Query: 121 SLIFLQLFCLEIFLLKVAGASVG 53
           +L+F+ ++CL IFL++VA + VG
Sbjct: 859 NLVFVLIWCLVIFLVEVAASLVG 881



to top

>HSLU_LACPL (Q88W26) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 472

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 116 QGRTKELCCIGLKSEHRRIDLEIEAASVVEPGVVAGIVPTG 238
           Q + K+   I L++ +RR++L  E    + P  +  I PTG
Sbjct: 22  QNQAKKAVAIALRNRYRRMELSAEMQEEITPKNMLMIGPTG 62



to top

>CFTR_TRIVU (Q5D1Z7) Cystic fibrosis transmembrane conductance regulator (CFTR)|
           (cAMP-dependent chloride channel) (ATP-binding cassette
           transporter sub-family C member 7)
          Length = 1478

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -1

Query: 121 SLIFLQLFCLEIFLLKVAGASVG 53
           SLIF+ ++CL IFL++V  + VG
Sbjct: 860 SLIFVLIWCLVIFLVEVGASLVG 882



to top

>RS3_METAC (Q8TRU1) 30S ribosomal protein S3P|
          Length = 318

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +2

Query: 197 VVEPGVVAGIVPTGRVGDHVADEEPAERASEQP 295
           +++PGVV  +  + +V + V  EEPAE+ +E+P
Sbjct: 182 IIQPGVV--LPDSYKVRESVEVEEPAEKPAEKP 212



to top

>HSLU_AZOSE (Q5P503) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 442

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 116 QGRTKELCCIGLKSEHRRIDLEIEAASVVEPGVVAGIVPTG 238
           QG+ K+   I L++  RR  +E    S + P  +  I PTG
Sbjct: 20  QGKAKKAVAIALRNRWRRAQVEEPLRSEITPKNILMIGPTG 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,566,158
Number of Sequences: 219361
Number of extensions: 524811
Number of successful extensions: 1754
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1746
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top