Clone Name | rbart61c06 |
---|---|
Clone Library Name | barley_pub |
>gb|AY107385.1| Zea mays PCO102436 mRNA sequence Length = 429 Score = 165 bits (83), Expect = 1e-37 Identities = 181/212 (85%), Gaps = 5/212 (2%) Strand = Plus / Plus Query: 176 ctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtacccacc 235 |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | Sbjct: 189 ctagaaatcgaagccgccgccgtcgtcgaacccggcgtcgtagccggcgtcgtac---gc 245 Query: 236 ggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagccc 295 | |||||| ||||||||||||||||| ||||| || |||| ||||||||||||||||| Sbjct: 246 cgacgagtccgagatcatgtcgccgatcaggaggcccccgacggcgcctccgagcagccc 305 Query: 296 cgcgccgaggcccatccccatgccgctcttcttcggc--ggcttcacggcctgctgctgg 353 || ||||| |||||||| | | | |||||||| | || ||||||||||||||||| Sbjct: 306 ggccccgagccccatcccgaagttgttcttcttcttctgcgcctcacggcctgctgctgg 365 Query: 354 tacccgtacccggccggctgctgcggcgggta 385 |||||||||||||| | |||| |||||||||| Sbjct: 366 tacccgtacccggcggcctgcggcggcgggta 397
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 143 bits (72), Expect = 5e-31 Identities = 155/182 (85%), Gaps = 3/182 (1%) Strand = Plus / Plus Query: 174 atctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtaccca 233 ||||||||||||||||| || |||||||||||||| |||||||||||||| || ||| | Sbjct: 40965945 atctagaaatcgaagccaccgccgtcgtcgaaccctgcgtcgtagccggcgtcatacgcc 40966004 Query: 234 ccggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagc 293 | || ||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 40966005 ---gacgcgtcggagatggcgtctccgatgaggaggccgccgagcgcgccgccgagcagc 40966061 Query: 294 cccgcgccgaggcccatccccatgccgctcttcttcggcggcttcacggcctgctgctgg 353 || || ||||| |||||||| | | | ||||||||| |||||||||||||||||||||| Sbjct: 40966062 ccggctccgagtcccatcccgaagttgttcttcttcgccggcttcacggcctgctgctgg 40966121 Query: 354 ta 355 || Sbjct: 40966122 ta 40966123 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 196 cgtcgtcgaacccggcgtcgtagccggc 223 |||||| |||||||||||||||| |||| Sbjct: 15143407 cgtcgttgaacccggcgtcgtaggcggc 15143380
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 143 bits (72), Expect = 5e-31 Identities = 155/182 (85%), Gaps = 3/182 (1%) Strand = Plus / Plus Query: 174 atctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtaccca 233 ||||||||||||||||| || |||||||||||||| |||||||||||||| || ||| | Sbjct: 2875 atctagaaatcgaagccaccgccgtcgtcgaaccctgcgtcgtagccggcgtcatacgcc 2934 Query: 234 ccggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagc 293 | || ||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 2935 ---gacgcgtcggagatggcgtctccgatgaggaggccgccgagcgcgccgccgagcagc 2991 Query: 294 cccgcgccgaggcccatccccatgccgctcttcttcggcggcttcacggcctgctgctgg 353 || || ||||| |||||||| | | | ||||||||| |||||||||||||||||||||| Sbjct: 2992 ccggctccgagtcccatcccgaagttgttcttcttcgccggcttcacggcctgctgctgg 3051 Query: 354 ta 355 || Sbjct: 3052 ta 3053
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 143 bits (72), Expect = 5e-31 Identities = 155/182 (85%), Gaps = 3/182 (1%) Strand = Plus / Plus Query: 174 atctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtaccca 233 ||||||||||||||||| || |||||||||||||| |||||||||||||| || ||| | Sbjct: 94370 atctagaaatcgaagccaccgccgtcgtcgaaccctgcgtcgtagccggcgtcatacgcc 94429 Query: 234 ccggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagc 293 | || ||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 94430 ---gacgcgtcggagatggcgtctccgatgaggaggccgccgagcgcgccgccgagcagc 94486 Query: 294 cccgcgccgaggcccatccccatgccgctcttcttcggcggcttcacggcctgctgctgg 353 || || ||||| |||||||| | | | ||||||||| |||||||||||||||||||||| Sbjct: 94487 ccggctccgagtcccatcccgaagttgttcttcttcgccggcttcacggcctgctgctgg 94546 Query: 354 ta 355 || Sbjct: 94547 ta 94548
>dbj|AK120801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012M12, full insert sequence Length = 1353 Score = 143 bits (72), Expect = 5e-31 Identities = 155/182 (85%), Gaps = 3/182 (1%) Strand = Plus / Minus Query: 174 atctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtaccca 233 ||||||||||||||||| || |||||||||||||| |||||||||||||| || ||| | Sbjct: 1191 atctagaaatcgaagccaccgccgtcgtcgaaccctgcgtcgtagccggcgtcatacgcc 1132 Query: 234 ccggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagc 293 | || ||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 1131 ---gacgcgtcggagatggcgtctccgatgaggaggccgccgagcgcgccgccgagcagc 1075 Query: 294 cccgcgccgaggcccatccccatgccgctcttcttcggcggcttcacggcctgctgctgg 353 || || ||||| |||||||| | | | ||||||||| |||||||||||||||||||||| Sbjct: 1074 ccggctccgagtcccatcccgaagttgttcttcttcgccggcttcacggcctgctgctgg 1015 Query: 354 ta 355 || Sbjct: 1014 ta 1013
>dbj|AK100995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146J24, full insert sequence Length = 1371 Score = 143 bits (72), Expect = 5e-31 Identities = 155/182 (85%), Gaps = 3/182 (1%) Strand = Plus / Minus Query: 174 atctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtaccca 233 ||||||||||||||||| || |||||||||||||| |||||||||||||| || ||| | Sbjct: 1195 atctagaaatcgaagccaccgccgtcgtcgaaccctgcgtcgtagccggcgtcatacgcc 1136 Query: 234 ccggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagc 293 | || ||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 1135 ---gacgcgtcggagatggcgtctccgatgaggaggccgccgagcgcgccgccgagcagc 1079 Query: 294 cccgcgccgaggcccatccccatgccgctcttcttcggcggcttcacggcctgctgctgg 353 || || ||||| |||||||| | | | ||||||||| |||||||||||||||||||||| Sbjct: 1078 ccggctccgagtcccatcccgaagttgttcttcttcgccggcttcacggcctgctgctgg 1019 Query: 354 ta 355 || Sbjct: 1018 ta 1017
>ref|NM_190041.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1077 Score = 139 bits (70), Expect = 8e-30 Identities = 153/180 (85%), Gaps = 3/180 (1%) Strand = Plus / Minus Query: 176 ctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtacccacc 235 ||||||||||||||| || |||||||||||||| |||||||||||||| || ||| | Sbjct: 1077 ctagaaatcgaagccaccgccgtcgtcgaaccctgcgtcgtagccggcgtcatacgcc-- 1020 Query: 236 ggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagccc 295 | || ||||||||| ||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 1019 -gacgcgtcggagatggcgtctccgatgaggaggccgccgagcgcgccgccgagcagccc 961 Query: 296 cgcgccgaggcccatccccatgccgctcttcttcggcggcttcacggcctgctgctggta 355 || ||||| |||||||| | | | ||||||||| |||||||||||||||||||||||| Sbjct: 960 ggctccgagtcccatcccgaagttgttcttcttcgccggcttcacggcctgctgctggta 901
>gb|BC058386.1| Mus musculus neuralized-like homolog (Drosophila), mRNA (cDNA clone MGC:66919 IMAGE:6831952), complete cds Length = 3995 Score = 46.1 bits (23), Expect = 0.084 Identities = 36/39 (92%), Gaps = 1/39 (2%) Strand = Plus / Plus Query: 266 gagcccgccgagcgcgcctccgagcagccccgcgccgag 304 ||||||||||| || |||||||||||||| ||||||||| Sbjct: 56 gagcccgccga-cgagcctccgagcagccgcgcgccgag 93
>gb|AC132288.5| Mus musculus BAC clone RP24-315D13 from chromosome 19, complete sequence Length = 177655 Score = 46.1 bits (23), Expect = 0.084 Identities = 36/39 (92%), Gaps = 1/39 (2%) Strand = Plus / Minus Query: 266 gagcccgccgagcgcgcctccgagcagccccgcgccgag 304 ||||||||||| || |||||||||||||| ||||||||| Sbjct: 131216 gagcccgccga-cgagcctccgagcagccgcgcgccgag 131179
>ref|XM_894271.2| PREDICTED: Mus musculus similar to Histone H1.5 (H1 VAR.5) (H1b) (LOC629389), mRNA Length = 975 Score = 46.1 bits (23), Expect = 0.084 Identities = 36/39 (92%), Gaps = 1/39 (2%) Strand = Plus / Minus Query: 266 gagcccgccgagcgcgcctccgagcagccccgcgccgag 304 ||||||||||| || |||||||||||||| ||||||||| Sbjct: 182 gagcccgccga-cgagcctccgagcagccgcgcgccgag 145
>gb|BC099702.1| Mus musculus neuralized-like homolog (Drosophila), mRNA (cDNA clone MGC:106438 IMAGE:6825751), complete cds Length = 4217 Score = 46.1 bits (23), Expect = 0.084 Identities = 36/39 (92%), Gaps = 1/39 (2%) Strand = Plus / Plus Query: 266 gagcccgccgagcgcgcctccgagcagccccgcgccgag 304 ||||||||||| || |||||||||||||| ||||||||| Sbjct: 231 gagcccgccga-cgagcctccgagcagccgcgcgccgag 268
>gb|AC090657.40| Mus musculus strain C57BL/6J clone rp23-410i12 map 18, complete sequence Length = 186929 Score = 46.1 bits (23), Expect = 0.084 Identities = 36/39 (92%), Gaps = 1/39 (2%) Strand = Plus / Minus Query: 266 gagcccgccgagcgcgcctccgagcagccccgcgccgag 304 ||||||||||| || |||||||||||||| ||||||||| Sbjct: 106978 gagcccgccga-cgagcctccgagcagccgcgcgccgag 106941
>dbj|AK046382.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230378F24 product:neuralized homolog (Drosophila), full insert sequence Length = 4034 Score = 46.1 bits (23), Expect = 0.084 Identities = 36/39 (92%), Gaps = 1/39 (2%) Strand = Plus / Plus Query: 266 gagcccgccgagcgcgcctccgagcagccccgcgccgag 304 ||||||||||| || |||||||||||||| ||||||||| Sbjct: 30 gagcccgccga-cgagcctccgagcagccgcgcgccgag 67
>ref|NM_021360.3| Mus musculus neuralized-like homolog (Drosophila) (Neurl), mRNA Length = 4217 Score = 46.1 bits (23), Expect = 0.084 Identities = 36/39 (92%), Gaps = 1/39 (2%) Strand = Plus / Plus Query: 266 gagcccgccgagcgcgcctccgagcagccccgcgccgag 304 ||||||||||| || |||||||||||||| ||||||||| Sbjct: 231 gagcccgccga-cgagcctccgagcagccgcgcgccgag 268
>emb|Z99109.2|BSUB0006 Bacillus subtilis complete genome (section 6 of 21): from 1011039 to 1209781 Length = 198743 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 331 gcggcttcacggcctgctgctg 352 |||||||||||||||||||||| Sbjct: 137208 gcggcttcacggcctgctgctg 137229
>emb|Y09476.1|BSY09476 Bacillus subtilis 54kb genomic DNA fragment Length = 53533 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 331 gcggcttcacggcctgctgctg 352 |||||||||||||||||||||| Sbjct: 6139 gcggcttcacggcctgctgctg 6160
>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete sequence Length = 128810 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 82 gaaaaatctcaagacaaaataa 103 |||||||||||||||||||||| Sbjct: 118779 gaaaaatctcaagacaaaataa 118758
>gb|AC171909.2| Capitella capitata clone JGIBGZA-9H1, complete sequence Length = 33412 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 94 gacaaaataactgaagaaatat 115 |||||||||||||||||||||| Sbjct: 22738 gacaaaataactgaagaaatat 22717
>emb|CT571261.1| Medicago truncatula chromosome 5 clone mth2-67l4, COMPLETE SEQUENCE Length = 136545 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 82 gaaaaatctcaagacaaaataa 103 |||||||||||||||||||||| Sbjct: 53591 gaaaaatctcaagacaaaataa 53570
>emb|CT010509.10| Mouse DNA sequence from clone RP23-63E8 on chromosome 9, complete sequence Length = 258170 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 329 cggcggcttcacggcctgctgc 350 |||||||||||||||||||||| Sbjct: 198283 cggcggcttcacggcctgctgc 198262
>emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment 19/24 Length = 295650 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 accggccgagtcggagatcat 253 ||||||||||||||||||||| Sbjct: 91442 accggccgagtcggagatcat 91462
>gb|AC027281.10| Homo sapiens chromosome 16 clone RP11-424M24, complete sequence Length = 221210 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 acaaaataactgaagaaatat 115 ||||||||||||||||||||| Sbjct: 52203 acaaaataactgaagaaatat 52183
>gb|AC007208.13| Drosophila melanogaster clone BACR05D08, complete sequence Length = 172190 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 cagaaaaatctcaagacaaaataa 103 |||||||||||||||| ||||||| Sbjct: 78290 cagaaaaatctcaagagaaaataa 78313
>ref|NM_193827.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 894 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 196 cgtcgtcgaacccggcgtcgtagccggc 223 |||||| |||||||||||||||| |||| Sbjct: 880 cgtcgttgaacccggcgtcgtaggcggc 853
>emb|Z99283.1|CEY70C5C Caenorhabditis elegans YAC Y70C5C, complete sequence Length = 20639 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 aaaataactgaagaaatatc 116 |||||||||||||||||||| Sbjct: 18155 aaaataactgaagaaatatc 18136
>ref|XM_776602.1| PREDICTED: Strongylocentrotus purpuratus similar to ankyrin 3, epithelial isoform a (LOC576280), mRNA Length = 5670 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 ttcttcggcggcttcacggcctgctgct 351 ||||||||||||||| ||||| |||||| Sbjct: 89 ttcttcggcggcttctcggccggctgct 62
>gb|AC102556.7| Mus musculus chromosome 18, clone RP23-177F9, complete sequence Length = 220133 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tgagcagaaaaatctcaaga 95 |||||||||||||||||||| Sbjct: 95369 tgagcagaaaaatctcaaga 95388
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16 Length = 348642 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 ccgagcagccccgcgccgaggccc 308 |||||||| ||||||||||||||| Sbjct: 70697 ccgagcaggcccgcgccgaggccc 70674
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 ccgagcagccccgcgccgaggccc 308 |||||||| ||||||||||||||| Sbjct: 143717 ccgagcaggcccgcgccgaggccc 143694
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 ccgagcagccccgcgccgaggccc 308 |||||||| ||||||||||||||| Sbjct: 227260 ccgagcaggcccgcgccgaggccc 227283
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 cagccccgcgccgaggccca 309 |||||||||||||||||||| Sbjct: 168104 cagccccgcgccgaggccca 168085
>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0560B06 Length = 161720 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 196 cgtcgtcgaacccggcgtcgtagccggc 223 |||||| |||||||||||||||| |||| Sbjct: 159459 cgtcgttgaacccggcgtcgtaggcggc 159432
>emb|AL731773.20| Mouse DNA sequence from clone RP23-152G20 on chromosome X, complete sequence Length = 162215 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 atgttaaaaccttctattta 31 |||||||||||||||||||| Sbjct: 133684 atgttaaaaccttctattta 133703 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 atgttaaaaccttctattta 31 |||||||||||||||||||| Sbjct: 127122 atgttaaaaccttctattta 127141
>gb|AC087302.7| Homo sapiens chromosome 17, clone RP11-761L11, complete sequence Length = 129564 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 ttaaaaccttctatttacattacc 38 |||||||||| ||||||||||||| Sbjct: 31855 ttaaaaccttatatttacattacc 31832
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gtcgtcgaacccggcgtcgt 216 |||||||||||||||||||| Sbjct: 2030543 gtcgtcgaacccggcgtcgt 2030524
>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete Sequence, complete sequence Length = 105198 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 196 cgtcgtcgaacccggcgtcgtagccggc 223 |||||| |||||||||||||||| |||| Sbjct: 97072 cgtcgttgaacccggcgtcgtaggcggc 97045
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cgagcagccccgcgccgagg 305 |||||||||||||||||||| Sbjct: 8253593 cgagcagccccgcgccgagg 8253612 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cgccgagcgcgcctccgagc 290 |||||||||||||||||||| Sbjct: 7847114 cgccgagcgcgcctccgagc 7847133
>dbj|AP003017.1| Mesorhizobium loti MAFF303099 plasmid pMLb DNA, complete genome Length = 208315 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ccgcccacagatgcgccggc 70 |||||||||||||||||||| Sbjct: 14854 ccgcccacagatgcgccggc 14873
>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0043B10 Length = 167399 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 196 cgtcgtcgaacccggcgtcgtagccggc 223 |||||| |||||||||||||||| |||| Sbjct: 115373 cgtcgttgaacccggcgtcgtaggcggc 115346
>dbj|AK100805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121K24, full insert sequence Length = 1165 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 196 cgtcgtcgaacccggcgtcgtagccggc 223 |||||| |||||||||||||||| |||| Sbjct: 988 cgtcgttgaacccggcgtcgtaggcggc 961
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 acccggccggctgctgcggc 380 |||||||||||||||||||| Sbjct: 515111 acccggccggctgctgcggc 515092
>gb|AC134787.6| Mus musculus chromosome 1, clone RP24-477E13, complete sequence Length = 150960 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 aaaaatctcaagacaaaata 102 |||||||||||||||||||| Sbjct: 141498 aaaaatctcaagacaaaata 141517
>gb|AE003670.5| Drosophila melanogaster chromosome 2L, section 79 of 83 of the complete sequence Length = 258711 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 cagaaaaatctcaagacaaaataa 103 |||||||||||||||| ||||||| Sbjct: 107365 cagaaaaatctcaagagaaaataa 107388
>emb|AJ271919.1|MMU271919 Mus musculus partial neurl gene, exon 1 and joined CDS Length = 929 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 gcctccgagcagccccgcgccgag 304 |||||||||||||| ||||||||| Sbjct: 388 gcctccgagcagccgcgcgccgag 411
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 cgagcagccccgcgccgagg 305 |||||||||||||||||||| Sbjct: 1643395 cgagcagccccgcgccgagg 1643376
>gb|AC134542.3| Mus musculus BAC clone RP24-441E15 from 6, complete sequence Length = 175750 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 agaaaaatctcaagacaaaa 100 |||||||||||||||||||| Sbjct: 40707 agaaaaatctcaagacaaaa 40726
>gb|AC138397.4| Mus musculus BAC clone RP23-65O11 from 8, complete sequence Length = 246976 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 agacaaaataactgaagaaa 112 |||||||||||||||||||| Sbjct: 14971 agacaaaataactgaagaaa 14990
>gb|AC133202.3| Mus musculus BAC clone RP23-83P19 from 8, complete sequence Length = 150932 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 agacaaaataactgaagaaa 112 |||||||||||||||||||| Sbjct: 44771 agacaaaataactgaagaaa 44752
>emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11, COMPLETE SEQUENCE Length = 136557 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaaaaatctcaagacaaaat 101 |||||||||||||||||||| Sbjct: 69864 gaaaaatctcaagacaaaat 69883
>gb|AC136316.13| Mus musculus chromosome 1, clone RP24-331K22, complete sequence Length = 197109 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aaaaatctcaagacaaaata 102 |||||||||||||||||||| Sbjct: 143305 aaaaatctcaagacaaaata 143286
>emb|AL671888.8| Mouse DNA sequence from clone RP23-247O14 on chromosome X, complete sequence Length = 52491 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 gagcagaaaaatctcaagacaaaa 100 ||||||||||||||||||| |||| Sbjct: 15145 gagcagaaaaatctcaagaaaaaa 15122 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,907,411 Number of Sequences: 3902068 Number of extensions: 2907411 Number of successful extensions: 65542 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65003 Number of HSP's gapped (non-prelim): 533 length of query: 388 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 366 effective length of database: 17,147,199,772 effective search space: 6275875116552 effective search space used: 6275875116552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)