ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X84056.1|HVPAF93 H.vulgare paf93 gene 585 e-164
2gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, c... 236 3e-59
3gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein ... 174 1e-40
4gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (... 167 3e-38
5gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein ... 165 1e-37
6gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence 159 6e-36
7emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin... 143 4e-31
8gb|AF181458.1|AF181458 Hordeum vulgare dehydrin (Dhn8) mRNA, com... 107 2e-20
9gb|AY587109.1| Oryza sativa (japonica cultivar-group) dehydratio... 50 0.004
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
11dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
12dbj|AK070197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
13emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chr... 48 0.017
14gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, com... 42 1.0
15emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 i... 42 1.0
16emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in ... 42 1.0
17gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome... 42 1.0
18gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosom... 40 4.1
19ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypo... 40 4.1
20gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, com... 40 4.1
21emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 ... 40 4.1
22emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 i... 40 4.1
23dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07,... 40 4.1
24dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, ... 40 4.1
25gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, comple... 40 4.1
26dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 4.1
27dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 4.1 
>emb|X84056.1|HVPAF93 H.vulgare paf93 gene
          Length = 1154

 Score =  585 bits (295), Expect = e-164
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                        
Query: 5    ggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgccc 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 ggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgccc 1095

                                                                        
Query: 65   gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 1035

                                                                        
Query: 125  cccgtatacccaaactgaacacaagcatccgtcacctaacgggcttcacagaccggacct 184
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1034 cccgtatacccaaactgaacacaagcatccgtcacctaacggacttcacagaccggacct 975

                                                                        
Query: 185  tcaaagacgatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacaca 244
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 974  tcaaagacgatcaatccctccatcttgacacggacttagacgtaaagcaaacacgacaca 915

                                                                        
Query: 245  cgccaacaatttaatggaggtccggtgatgagtcccggggcacggcggcgatcaagctct 304
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 914  cgccaacaatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctct 855

                       
Query: 305  gggcttgtgct 315
            |||||||||||
Sbjct: 854  gggcttgtgct 844
to top
>gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, complete cds
          Length = 2254

 Score =  236 bits (119), Expect = 3e-59
 Identities = 122/123 (99%)
 Strand = Plus / Minus

                                                                        
Query: 193  gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 2187

                                                                        
Query: 253  atttaatggaggtccggtgatgagtcccggggcacggcggcgatcaagctctgggcttgt 312
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2186 atttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgt 2127

               
Query: 313  gct 315
            |||
Sbjct: 2126 gct 2124
to top
>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA,
            complete cds
          Length = 1242

 Score =  174 bits (88), Expect = 1e-40
 Identities = 164/184 (89%), Gaps = 4/184 (2%)
 Strand = Plus / Minus

                                                                        
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192
            |||||||||| ||||||||||||||||  |||||||||||| ||||| ||||||||||||
Sbjct: 1037 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 978

                                                                        
Query: 193  gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 251
            |||||| |||| ||| ||||||||  |||| ||| |||||||||||| ||||||||||||
Sbjct: 977  gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacacgccaac 919

                                                                        
Query: 252  aatttaatggaggtccggtgatgagtcccggggcacggcggcgatcaagctctgggcttg 311
            |||| ||| |||||||||| | ||||| | |||||||||||||||||||| |||||||||
Sbjct: 918  aattcaatcgaggtccggtcacgagtctc-gggcacggcggcgatcaagcgctgggcttg 860

                
Query: 312  tgct 315
            ||||
Sbjct: 859  tgct 856



 Score =  123 bits (62), Expect = 4e-25
 Identities = 105/116 (90%), Gaps = 5/116 (4%)
 Strand = Plus / Minus

                                                                        
Query: 8    ggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgcccgta 67
            |||||||||||||||||||||||||||||||||||  ||||||||||| ||| ||||   
Sbjct: 1138 ggaaatctttaatatcaaggcataatgcccagcaaataaccaatacac-aagcgccc--- 1083

                                                                    
Query: 68   ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
            |||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1082 ataataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaactgaa 1028
to top
>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete
            cds
          Length = 1136

 Score =  167 bits (84), Expect = 3e-38
 Identities = 162/184 (88%), Gaps = 3/184 (1%)
 Strand = Plus / Minus

                                                                        
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192
            |||||||||| || ||||| |||||||  |||||||||||| ||||||||||||||||||
Sbjct: 1038 ccaaactgaaacagaagcacccgtcactgaacgggcttcacggaccggaccttcaaagac 979

                                                                        
Query: 193  gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 251
            |||||| |||| ||| ||||||||  ||||| || |||||||||||| ||||||||||||
Sbjct: 978  gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 919

                                                                        
Query: 252  aatttaatggaggtccggtgatgagtcccggggcacggcggcgatcaagctctgggcttg 311
            |||| ||| |||||||||| | | ||| | |||||||||||||||||||| |||||||||
Sbjct: 918  aattcaatcgaggtccggtcacgggtctc-gggcacggcggcgatcaagcgctgggcttg 860

                
Query: 312  tgct 315
            ||||
Sbjct: 859  tgct 856



 Score =  121 bits (61), Expect = 1e-24
 Identities = 104/116 (89%), Gaps = 8/116 (6%)
 Strand = Plus / Minus

                                                                        
Query: 8    ggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgcccgta 67
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   
Sbjct: 1136 ggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagtgccc--- 1081

                                                                    
Query: 68   ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
               ||||| ||| ||||||  ||||||||||||||||||||||| |||||||||||
Sbjct: 1080 ---ataagtaaacaaactt-gacaacatccaggacctgactctgaaccaaactgaa 1029
to top
>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA,
            complete cds
          Length = 1181

 Score =  165 bits (83), Expect = 1e-37
 Identities = 154/175 (88%), Gaps = 2/175 (1%)
 Strand = Plus / Minus

                                                                        
Query: 142  aacacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagacgatcaatcc 201
            |||| ||||| |||||||  |||||||||||| |||||||||||||||||||||||| ||
Sbjct: 1038 aacagaagcacccgtcactcaacgggcttcacggaccggaccttcaaagacgatcaaccc 979

                                                                        
Query: 202  ct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatg 260
            || ||| ||||||||  ||||| || |||||||||||| |||||||||||||||| ||| 
Sbjct: 978  ctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaacaattcaatc 919

                                                                   
Query: 261  gaggtccggtgatgagtcccggggcacggcggcgatcaagctctgggcttgtgct 315
            |||||||||| | | ||| | |||||||||||||||||||| |||||||||||||
Sbjct: 918  gaggtccggtcacgggtctc-gggcacggcggcgatcaagcgctgggcttgtgct 865



 Score =  113 bits (57), Expect = 3e-22
 Identities = 57/57 (100%)
 Strand = Plus / Minus

                                                                     
Query: 1    actgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaa 57
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 actgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaa 1089
to top
>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence
          Length = 1130

 Score =  159 bits (80), Expect = 6e-36
 Identities = 162/184 (88%), Gaps = 4/184 (2%)
 Strand = Plus / Minus

                                                                        
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192
            |||||||||| ||||| ||||||||||  ||||||||||||||||||||||||| |||||
Sbjct: 1009 ccaaactgaaacacaaacatccgtcactgaacgggcttcacagaccggaccttc-aagac 951

                                                                        
Query: 193  gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 251
            |||||| |||| ||| ||||||||  ||||| || |||||||||||| ||||||||||||
Sbjct: 950  gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 891

                                                                        
Query: 252  aatttaatggaggtccggtgatgagtcccggggcacggcggcgatcaagctctgggcttg 311
            |||| ||| ||| |||||| | ||||| | ||||||||||||||| |||| |||||||||
Sbjct: 890  aattcaatcgagctccggtcacgagtctc-gggcacggcggcgattaagcgctgggcttg 832

                
Query: 312  tgct 315
            ||||
Sbjct: 831  tgct 828



 Score =  143 bits (72), Expect = 4e-31
 Identities = 112/123 (91%), Gaps = 8/123 (6%)
 Strand = Plus / Minus

                                                                        
Query: 1    actgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1114 actgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagt 1056

                                                                        
Query: 61   gcccgtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaact 120
            ||||      ||||| ||| |||||| |||||||||||||||||||||||| ||||||||
Sbjct: 1055 gccc------ataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaact 1003

               
Query: 121  gaa 123
            |||
Sbjct: 1002 gaa 1000
to top
>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene)
          Length = 1127

 Score =  143 bits (72), Expect = 4e-31
 Identities = 160/184 (86%), Gaps = 4/184 (2%)
 Strand = Plus / Minus

                                                                        
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192
            |||||||||| ||||||||||||||||  |||||||||||| ||||| ||||||||||||
Sbjct: 1035 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 976

                                                                        
Query: 193  gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 251
            |||||| |||| ||| ||||||||  |||| ||| |||||||||||| ||||||||||||
Sbjct: 975  gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacacgccaac 917

                                                                        
Query: 252  aatttaatggaggtccggtgatgagtcccggggcacggcggcgatcaagctctgggcttg 311
            |||| ||| | |||||||| | ||||| | ||||||||||||| ||||||  |||| |||
Sbjct: 916  aattcaatcggggtccggtcacgagtctc-gggcacggcggcgttcaagcgttgggattg 858

                
Query: 312  tgct 315
            ||||
Sbjct: 857  tgct 854



 Score =  105 bits (53), Expect = 8e-20
 Identities = 96/107 (89%), Gaps = 5/107 (4%)
 Strand = Plus / Minus

                                                                        
Query: 17   taatatcaaggcataatgcccagcaataaaccaatacacaaagtgcccgtaataataagc 76
            ||||||||||||||||||||||||||  ||||||||||| ||| ||||   |||||||| 
Sbjct: 1127 taatatcaaggcataatgcccagcaaataaccaatacac-aagcgccc---ataataagt 1072

                                                           
Query: 77   aaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
            ||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1071 aaacaaactt-aacaacatccaggacctgactctgaaccaaactgaa 1026
to top
>gb|AF181458.1|AF181458 Hordeum vulgare dehydrin (Dhn8) mRNA, complete cds
          Length = 808

 Score =  107 bits (54), Expect = 2e-20
 Identities = 57/58 (98%)
 Strand = Plus / Minus

                                                                     
Query: 258 atggaggtccggtgatgagtcccggggcacggcggcgatcaagctctgggcttgtgct 315
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 808 atggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgct 751
to top
>gb|AY587109.1| Oryza sativa (japonica cultivar-group) dehydration-stress inducible
            protein 1 mRNA, complete cds
          Length = 1315

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 2    ctgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaataca 54
            |||||| |||||| |||||| ||||||| ||||||||||   |||||||||||
Sbjct: 1265 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 1213
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                     
Query: 2        ctgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaataca 54
                |||||| |||||| |||||| ||||||| ||||||||||   |||||||||||
Sbjct: 27184022 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 27184074
to top
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684A08
          Length = 137841

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                  
Query: 2     ctgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaataca 54
             |||||| |||||| |||||| ||||||| ||||||||||   |||||||||||
Sbjct: 34693 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 34745
to top
>dbj|AK070197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042N13, full
            insert sequence
          Length = 1292

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 2    ctgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaataca 54
            |||||| |||||| |||||| ||||||| ||||||||||   |||||||||||
Sbjct: 1277 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 1225
to top
>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete
              sequence
          Length = 205838

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 103    ctgactctggaccaaactgaagcc 126
              ||||||||||||||||||||||||
Sbjct: 138293 ctgactctggaccaaactgaagcc 138316
to top
>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence
          Length = 156547

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 132    acccaaactgaacacaagcat 152
              |||||||||||||||||||||
Sbjct: 134241 acccaaactgaacacaagcat 134261
to top
>emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 in linkage group 24
              Contains part of a novel gene similar to human DECR2
              (peroxisomal 2,4-dienoyl CoA reductase 2),  a novel gene
              similar to human KIAA0665, a novel gene similar to human
              KIAA0683, a novel gene similar to human KIAA0590, part of a
              novel gene and three CpG islands, complete sequence
          Length = 161218

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 40     caataaaccaatacacaaagt 60
              |||||||||||||||||||||
Sbjct: 156591 caataaaccaatacacaaagt 156571
to top
>emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in linkage group 24,
             complete sequence
          Length = 176602

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    caataaaccaatacacaaagt 60
             |||||||||||||||||||||
Sbjct: 34762 caataaaccaatacacaaagt 34782
to top
>gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome 7, complete sequence
          Length = 213581

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    cataatgcccagcaataaacc 48
             |||||||||||||||||||||
Sbjct: 49844 cataatgcccagcaataaacc 49824
to top
>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence
          Length = 221754

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     aataagcaaataaacttaaa 89
              ||||||||||||||||||||
Sbjct: 153660 aataagcaaataaacttaaa 153679
to top
>ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0511) partial mRNA
          Length = 5448

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   aaataaacttaaacaacatc 96
            ||||||||||||||||||||
Sbjct: 4865 aaataaacttaaacaacatc 4884
to top
>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence
          Length = 211515

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 65     gtaataataagcaaataaacttaaacaa 92
              |||||||||||||||| || ||||||||
Sbjct: 140814 gtaataataagcaaattaaattaaacaa 140841
to top
>emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 in linkage group 5,
             complete sequence
          Length = 177385

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    taataataagcaaataaacttaaa 89
             |||||||||| |||||||||||||
Sbjct: 63646 taataataagtaaataaacttaaa 63623
to top
>emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 in linkage group 5,
             complete sequence
          Length = 157791

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    taataataagcaaataaacttaaa 89
             |||||||||| |||||||||||||
Sbjct: 81135 taataataagtaaataaacttaaa 81112
to top
>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete
            sequences
          Length = 181678

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 97   caggacctgactctggaccaaactgaag 124
            |||||| ||||||||||||| |||||||
Sbjct: 3276 caggacttgactctggaccagactgaag 3249
to top
>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete
              sequences
          Length = 155513

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 97     caggacctgactctggaccaaactgaag 124
              |||||| ||||||||||||| |||||||
Sbjct: 131204 caggacttgactctggaccagactgaag 131177
to top
>gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, complete sequence
          Length = 176649

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aataagcaaataaacttaaa 89
              ||||||||||||||||||||
Sbjct: 121495 aataagcaaataaacttaaa 121476
to top
>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 97    caggacctgactctggaccaaactgaag 124
             |||||| ||||||||||||| |||||||
Sbjct: 80688 caggacttgactctggaccagactgaag 80661
to top
>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete
              sequence
          Length = 136804

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 97     caggacctgactctggaccaaactgaag 124
              |||||| ||||||||||||| |||||||
Sbjct: 102805 caggacttgactctggaccagactgaag 102778


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,588,881
Number of Sequences: 3902068
Number of extensions: 2588881
Number of successful extensions: 48908
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48830
Number of HSP's gapped (non-prelim): 65
length of query: 315
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 293
effective length of database: 17,147,199,772
effective search space: 5024129533196
effective search space used: 5024129533196
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top