>TRUD1_METJA (Q58008) Probable tRNA pseudouridine synthase D 1 (EC 5.4.99.-)|
           (tRNA-uridine isomerase D 1) (tRNA pseudouridylate
           synthase D 1)
          Length = 392

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 36  QSTFTLLPPFLNISFCRDFTSGLHTDVYRHTLEYIF 143
           Q  F +LPP+L   F   + S L  ++     EY F
Sbjct: 255 QKAFMILPPYLRCMFINAYQSYLFNEIINRRFEYGF 290

>PRKDC_CHICK (Q8QGX4) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4134

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = -3

Query: 379  DVMKEMEEGWGDLPTVPRKLVFKAFMLAGRPM*RDD----ELLGVVNCDQ*PLFSL 224
            +++K + E W +  ++P  L+F+ F  +G P  +D+    +LLG+V  +  P F L
Sbjct: 2235 EIIKTVIECWKNCLSIPYSLIFEKFS-SGDPDTKDNSVGIQLLGIVLANNLPPFDL 2289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,799,693
Number of Sequences: 219361
Number of extensions: 905831
Number of successful extensions: 2022
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2020
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)