ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intr... 131 1e-27
2gb|AY525641.1| Triticum aestivum delta tonoplast intrinsic prote... 103 3e-19
3gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic prote... 84 3e-13
4gb|AY525639.1| Triticum aestivum delta tonoplast intrinsic prote... 84 3e-13
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
6dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
7dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
8dbj|AK104464.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
9dbj|AK104377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
10dbj|AK104270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
11dbj|AK099616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
12dbj|AK099141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
13dbj|AK099015.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
14dbj|AK073531.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
15emb|BX470264.22| Zebrafish DNA sequence from clone CH211-252F13 ... 42 1.0
16gb|AC165149.5| Mus musculus BAC clone RP24-114C10 from chromosom... 40 4.0
17ref|NM_020416.2| Homo sapiens protein phosphatase 2 (formerly 2A... 40 4.0
18ref|NM_181876.1| Homo sapiens protein phosphatase 2 (formerly 2A... 40 4.0
19gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, co... 40 4.0
20gb|AC006012.2| Homo sapiens PAC clone RP5-942I16 from 7, complet... 40 4.0
21gb|AC117212.5| Mus musculus BAC clone RP23-302A24 from chromosom... 40 4.0
22gb|BC021735.2| Homo sapiens protein phosphatase 2 (formerly 2A),... 40 4.0
23gb|BC045682.1| Homo sapiens protein phosphatase 2 (formerly 2A),... 40 4.0
24dbj|AK127386.1| Homo sapiens cDNA FLJ45468 fis, clone BRSTN2015788 40 4.0
25gb|AC068733.12| Homo sapiens chromosome 11, clone RP11-304C12, c... 40 4.0
26gb|AC084327.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 4.0
27gb|AC116317.4| Homo sapiens BAC clone RP11-1406H17 from 4, compl... 40 4.0

>gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intrinsic protein mRNA,
           complete cds
          Length = 1067

 Score =  131 bits (66), Expect = 1e-27
 Identities = 166/200 (83%), Gaps = 17/200 (8%)
 Strand = Plus / Minus

                                                                       
Query: 113 gcttcgatctgaaccaaacagcatgacgttcttcacatcatcgagacattc-------tg 165
           |||||||||||||||||||| || || ||||||||||||||||| ||||||       ||
Sbjct: 932 gcttcgatctgaaccaaacaacaggatgttcttcacatcatcgaaacattcgtgagactg 873

                                                                       
Query: 166 accaccacgcacgcacttttttatgttgccgaaggcatcatggaaaccaaacaccgaacg 225
            |||||||| ||||||||||| |||||||||||||||| |||||         |||||||
Sbjct: 872 cccaccacgtacgcacttttt-atgttgccgaaggcattatgga---------ccgaacg 823

                                                                       
Query: 226 acccttcacatggatggcttagtagtcgttgctggcgacgggggtgtggttgtcgcacat 285
           || |||| ||||| |||||||||||||||||| |||||||||| |||||| ||| |||||
Sbjct: 822 actcttcccatggctggcttagtagtcgttgccggcgacggggctgtggtcgtcccacat 763

                               
Query: 286 gtacaggtaccggtagacga 305
           ||| ||||| ||||| ||||
Sbjct: 762 gtataggtatcggtaaacga 743



 Score =  117 bits (59), Expect = 2e-23
 Identities = 85/93 (91%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    aatcgcataaggaaactcaactgaagaattctcaaaccccaacaacttcacaacatcaca 60
            ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 1028 aatcgcataaggaaactcaactgaaaaattctcaaaccccaccaacttcacaacatcaca 969

                                             
Query: 61   ttatattacagatagagaagcatgcatcatcca 93
            ||   ||||||||| || | |||||||||||||
Sbjct: 968  tt---ttacagataaaggaacatgcatcatcca 939



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>gb|AY525641.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;3 mRNA,
           complete cds
          Length = 829

 Score =  103 bits (52), Expect = 3e-19
 Identities = 61/64 (95%)
 Strand = Plus / Minus

                                                                       
Query: 242 gcttagtagtcgttgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtag 301
           |||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 800 gcttagtagtcgttgccggcgacggcggtgtggtcgtcgcacatgtacaggtaccggtag 741

               
Query: 302 acga 305
           ||||
Sbjct: 740 acga 737



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>gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;2 mRNA,
           complete cds
          Length = 853

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                       
Query: 244 ttagtagtcgttgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 303
           |||||||||||||| |||||||| | |||||| |||||||||||||| ||||||||||||
Sbjct: 801 ttagtagtcgttgccggcgacggagctgtggtcgtcgcacatgtacacgtaccggtagac 742

             
Query: 304 ga 305
           ||
Sbjct: 741 ga 740



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>gb|AY525639.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;1 mRNA,
           complete cds
          Length = 817

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                       
Query: 240 tggcttagtagtcgttgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggt 299
           |||||||||||||||||| |||||||| | |||||| |||||||||||| ||||| ||||
Sbjct: 806 tggcttagtagtcgttgccggcgacggagctgtggtcgtcgcacatgtataggtatcggt 747

                 
Query: 300 agacga 305
           ||||||
Sbjct: 746 agacga 741



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                   
Query: 255      tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacga 305
                ||||||| ||||||| ||||| | |||||||||| | ||||||||||||||
Sbjct: 13251125 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacga 13251075



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>dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0427E01
          Length = 146395

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 255   tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacga 305
             ||||||| ||||||| ||||| | |||||||||| | ||||||||||||||
Sbjct: 12935 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacga 12885



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>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0012F14
          Length = 168629

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                 
Query: 255    tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacga 305
              ||||||| ||||||| ||||| | |||||||||| | ||||||||||||||
Sbjct: 168313 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacga 168263



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>dbj|AK104464.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C06, full
           insert sequence
          Length = 1194

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 255 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacga 305
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||||
Sbjct: 825 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacga 775



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>dbj|AK104377.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G09, full
           insert sequence
          Length = 1196

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 255 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacga 305
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||||
Sbjct: 827 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacga 777



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>dbj|AK104270.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-F03, full
           insert sequence
          Length = 1214

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 255 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacga 305
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||||
Sbjct: 827 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacga 777



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>dbj|AK099616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050J20, full
           insert sequence
          Length = 1197

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 255 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacga 305
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||||
Sbjct: 828 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacga 778



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>dbj|AK099141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055A02, full
           insert sequence
          Length = 1195

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 255 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacga 305
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||||
Sbjct: 826 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacga 776



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>dbj|AK099015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H02, full
           insert sequence
          Length = 1202

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 255 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacga 305
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||||
Sbjct: 828 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacga 778



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>dbj|AK073531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044F19, full
           insert sequence
          Length = 1220

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 255 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacga 305
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||||
Sbjct: 826 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacga 776



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>emb|BX470264.22| Zebrafish DNA sequence from clone CH211-252F13 in linkage group 7,
             complete sequence
          Length = 168673

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 47    ttcacaacatcacattatatt 67
             |||||||||||||||||||||
Sbjct: 78807 ttcacaacatcacattatatt 78827



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>gb|AC165149.5| Mus musculus BAC clone RP24-114C10 from chromosome 13, complete
             sequence
          Length = 191162

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ggaaactcaactgaagaatt 30
             ||||||||||||||||||||
Sbjct: 13923 ggaaactcaactgaagaatt 13942



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>ref|NM_020416.2| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit
            B (PR 52), gamma isoform (PPP2R2C), transcript variant 1,
            mRNA
          Length = 4117

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   aaaccccaacaacttcacaa 53
            ||||||||||||||||||||
Sbjct: 3856 aaaccccaacaacttcacaa 3837



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>ref|NM_181876.1| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit
            B (PR 52), gamma isoform (PPP2R2C), transcript variant 2,
            mRNA
          Length = 4087

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   aaaccccaacaacttcacaa 53
            ||||||||||||||||||||
Sbjct: 3826 aaaccccaacaacttcacaa 3807



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>gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, complete sequence
          Length = 168683

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     ggaaactcaactgaagaatt 30
              ||||||||||||||||||||
Sbjct: 136133 ggaaactcaactgaagaatt 136114



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>gb|AC006012.2| Homo sapiens PAC clone RP5-942I16 from 7, complete sequence
          Length = 121598

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    ggcatcatggaaaccaaaca 218
              ||||||||||||||||||||
Sbjct: 113843 ggcatcatggaaaccaaaca 113824



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>gb|AC117212.5| Mus musculus BAC clone RP23-302A24 from chromosome 6, complete sequence
          Length = 212735

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aaaccccaacaacttcacaa 53
             ||||||||||||||||||||
Sbjct: 57462 aaaccccaacaacttcacaa 57481



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>gb|BC021735.2| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory
           subunit B (PR 52), gamma isoform, mRNA (cDNA clone
           IMAGE:4816112)
          Length = 1172

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  aaaccccaacaacttcacaa 53
           ||||||||||||||||||||
Sbjct: 918 aaaccccaacaacttcacaa 899



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>gb|BC045682.1| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit
            B (PR 52), gamma isoform, mRNA (cDNA clone IMAGE:5300526)
          Length = 2161

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   aaaccccaacaacttcacaa 53
            ||||||||||||||||||||
Sbjct: 1900 aaaccccaacaacttcacaa 1881



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>dbj|AK127386.1| Homo sapiens cDNA FLJ45468 fis, clone BRSTN2015788
          Length = 1737

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   aaaccccaacaacttcacaa 53
            ||||||||||||||||||||
Sbjct: 1499 aaaccccaacaacttcacaa 1480



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>gb|AC068733.12| Homo sapiens chromosome 11, clone RP11-304C12, complete sequence
          Length = 191656

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     tctcaaaccccaacaacttcacaa 53
              ||||||||||||||| ||||||||
Sbjct: 107696 tctcaaaccccaacaccttcacaa 107719



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>gb|AC084327.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-367K14, complete
             sequence
          Length = 108667

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    aaaccccaacaacttcacaa 53
             ||||||||||||||||||||
Sbjct: 32732 aaaccccaacaacttcacaa 32713



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>gb|AC116317.4| Homo sapiens BAC clone RP11-1406H17 from 4, complete sequence
          Length = 160943

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aaaccccaacaacttcacaa 53
             ||||||||||||||||||||
Sbjct: 82311 aaaccccaacaacttcacaa 82330


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,651,952
Number of Sequences: 3902068
Number of extensions: 2651952
Number of successful extensions: 48188
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48139
Number of HSP's gapped (non-prelim): 47
length of query: 306
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 284
effective length of database: 17,147,199,772
effective search space: 4869804735248
effective search space used: 4869804735248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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