ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111614.1| Zea mays CL44864_1 mRNA sequence 117 2e-23
2gb|BT019299.1| Zea mays clone Contig972.F mRNA sequence 80 5e-12
3ref|XM_469859.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.065
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.065
5gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 46 0.065
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.065
7dbj|AK101534.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.065
8dbj|AK064205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.065
9gb|AC147816.2| Xenopus tropicalis clone CH216-106C24, complete s... 44 0.26
10gb|AC166101.4| Mus musculus BAC clone RP23-385P23 from chromosom... 42 1.0
11gb|AC149164.2| Xenopus tropicalis clone ISB-3O21, complete sequence 42 1.0
12gb|AC126429.4| Mus musculus BAC clone RP24-403O23 from chromosom... 42 1.0
13emb|AL390760.25| Human DNA sequence from clone RP11-370F5 on chr... 42 1.0
14emb|AL160004.18| Human DNA sequence from clone RP5-1068B5 on chr... 42 1.0
15emb|AL139252.8| Human DNA sequence from clone RP4-679K16 on chro... 42 1.0
16dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 42 1.0
17gb|AY365053.1| Ralstonia eutropha JMP134 plasmid pJP4, complete ... 40 4.0
18gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, co... 40 4.0
19gb|AF461013.1| Klebsiella pneumoniae strain M426 MerR, MerT (mer... 40 4.0
20gb|AY333434.1| Salmonella typhimurium plasmid pU302L, complete s... 40 4.0
21ref|XM_323996.1| Neurospora crassa OR74A predicted protein (NCU0... 40 4.0
22gb|AC150282.1| X. tropicalis BAC clone containing gene for BMP7,... 40 4.0
23ref|NM_013365.3| Homo sapiens golgi associated, gamma adaptin ea... 40 4.0
24ref|NM_001001560.1| Homo sapiens golgi associated, gamma adaptin... 40 4.0
25gb|BC044629.1| Homo sapiens golgi associated, gamma adaptin ear ... 40 4.0
26ref|XM_954091.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.0
27gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 4.0
28ref|XM_994570.1| PREDICTED: Mus musculus RNA binding motif prote... 40 4.0
29ref|XM_901661.2| PREDICTED: Mus musculus RNA binding motif prote... 40 4.0
30gb|AC073336.6| Homo sapiens BAC clone RP11-476H24 from 7, comple... 40 4.0
31gb|AF071413.3| Assembled sequence of transposon Tn21 containing ... 40 4.0
32gb|CP000355.1| Ralstonia metallidurans CH34 plasmid pMOL28, comp... 40 4.0
33gb|CP000354.1| Ralstonia metallidurans CH34 plasmid pMOL30, comp... 40 4.0
34emb|Y09025.1|ECMERTREL Enterobacter cloacae DNA, mosaic mercury ... 40 4.0
35gb|AC124431.4| Mus musculus BAC clone RP24-243J21 from chromosom... 40 4.0
36emb|Z83844.5|HS37E16 Human DNA sequence from clone RP1-37E16 on ... 40 4.0
37gb|CP000093.1| Ralstonia eutropha JMP134 plasmid 1, complete seq... 40 4.0
38gb|AC158217.4| Mus musculus chromosome 5, clone RP24-377B20, com... 40 4.0
39emb|Z00027.1|ISTN501 Transposon Tn501 from Pseudomonas aeruginos... 40 4.0
40emb|Y10102.1|ECTREMER2 Escherichia coli partial merA gene, merD ... 40 4.0
41emb|Y08992.1|EAMMRTRAN E.agglomerans pKLH272 incomplete unit of ... 40 4.0
42emb|X90708.2|AEPARREPG Ralstonia metallidurans CH34 plasmid pMOL28 40 4.0
43emb|X71400.2|AECZCOP5R Ralstonia metallidurans CH34 plasmid pMOL30 40 4.0
44emb|BX664015.1| Serratia marcescens plasmid R478 40 4.0
45emb|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmi... 40 4.0
46emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica ser... 40 4.0
47emb|AJ564903.1|UBA564903 Uncultured bacterium IncP-1beta multire... 40 4.0
48emb|AJ551280.1|PSP551280 Pseudomonas sp. A19-1 transposon Tn5060 40 4.0
49emb|AJ418049.1|CFR418049 Citrobacter freundii partial merA gene ... 40 4.0
50emb|AJ251540.1|ALW251540 Acinetobacter lwoffii NC7-1 partial mob... 40 4.0
51emb|AJ250010.1|ALW250010 Acinetobacter lwoffii partial mobilizab... 40 4.0
52emb|AJ851089.1| Uncultured bacterium pRSB107 plasmid 40 4.0
53emb|AL110219.1|HSM800873 Homo sapiens mRNA; cDNA DKFZp434A033 (f... 40 4.0
54dbj|AK122898.1| Homo sapiens cDNA FLJ16562 fis, clone SYNOV40052... 40 4.0
55dbj|AK095427.1| Homo sapiens cDNA FLJ38108 fis, clone D3OST20016... 40 4.0
56emb|CR609702.1| full-length cDNA clone CS0DG007YE15 of B cells (... 40 4.0
57dbj|AK092417.1| Homo sapiens cDNA FLJ35098 fis, clone PLACE60062... 40 4.0
58dbj|AK075256.1| Homo sapiens cDNA FLJ90775 fis, clone THYRO10010... 40 4.0
59emb|CR596724.1| full-length cDNA clone CS0DB008YM24 of Neuroblas... 40 4.0
60dbj|AK165277.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 40 4.0
61gb|DQ125241.2| Escherichia coli integron In117 IntI1 (intI1), Es... 40 4.0
62gb|AC153923.4| Mus musculus 6 BAC RP23-82I13 (Roswell Park Cance... 40 4.0
63gb|AF348706.1|AF348706 Shigella flexneri large virulence plasmid... 40 4.0
64gb|AF457211.1| Escherichia coli Tn5075, complete sequence 40 4.0
65gb|DQ302790.1| Spiromyces aspiralis isolate AFTOL-ID 185 RNA pol... 40 4.0
66gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.0
67gb|AF190862.1|AF190862 Homo sapiens ADP-ribosylation factor bind... 40 4.0
68gb|AF233521.1|AF233521 Homo sapiens Golgi-associated, gamma-adap... 40 4.0
69gb|AF218584.1|AF218584 Homo sapiens GGA1 mRNA, complete cds 40 4.0
70gb|J01730.1|R1004 Plasmid R100 putative (insA), putative (insB),... 40 4.0
71emb|CR456493.1| Homo sapiens GGA1 full length open reading frame... 40 4.0
72emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Mu... 40 4.0
73gb|AC147891.2| Xenopus tropicalis clone CH216-2E23, complete seq... 40 4.0
74gb|AY509004.1| Salmonella enterica subsp. enterica serovar Chole... 40 4.0
75gb|U80214.1|PSU80214 Pseudomonas stutzeri plasmid pPB MerR (merR... 40 4.0
76gb|AC149216.5| Mus musculus BAC clone RP24-194H8 from 18, comple... 40 4.0
77gb|K03089.1|NR1MER Plasmid NR1 mercury resistance (mer) operon 40 4.0
78gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, com... 40 4.0
79dbj|AP000342.1| Plasmid R100 DNA, complete sequence 40 4.0 
>gb|AY111614.1| Zea mays CL44864_1 mRNA sequence
          Length = 727

 Score =  117 bits (59), Expect = 2e-23
 Identities = 119/139 (85%)
 Strand = Plus / Plus

                                                                       
Query: 167 gggaggtggtaggtgtcgagctgccagtacttctgcttcaccccctcccacacctcctcc 226
           ||||||| ||||||||| || |||||||||||| ||||||| |||| ||| |||||||||
Sbjct: 174 gggaggtagtaggtgtccagttgccagtacttccgcttcacgcccttccagacctcctcc 233

                                                                       
Query: 227 ttgagggagtccttgacggggagggggatgaactgcgtcgagtacccgaggctcgccagc 286
              ||| | || ||||| || || ||||||||||||||||||||||| ||| |||| |||
Sbjct: 234 gccaggcaatctttgaccggcagagggatgaactgcgtcgagtacccaaggttcgcgagc 293

                              
Query: 287 tccagcgccaccagctggc 305
           ||||||||||| |||||||
Sbjct: 294 tccagcgccacgagctggc 312
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>gb|BT019299.1| Zea mays clone Contig972.F mRNA sequence
          Length = 928

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 106/128 (82%)
 Strand = Plus / Plus

                                                                       
Query: 167 gggaggtggtaggtgtcgagctgccagtacttctgcttcaccccctcccacacctcctcc 226
           ||||||| ||||| |||  | |||||||||||| |||||||||||| ||| |||||||||
Sbjct: 435 gggaggtagtaggggtcccgttgccagtacttccgcttcacccccttccaaacctcctcc 494

                                                                       
Query: 227 ttgagggagtccttgacggggagggggatgaactgcgtcgagtacccgaggctcgccagc 286
              ||||| |  ||||| ||||  ||||||||||||||||||||||| ||| || | |||
Sbjct: 495 gccagggaatttttgaccgggaaagggatgaactgcgtcgagtacccaaggttcccgagc 554

                   
Query: 287 tccagcgc 294
           ||| ||||
Sbjct: 555 tcccgcgc 562
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>ref|XM_469859.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1008

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 152 tctgcctggcagacggggaggtggtaggtgtcgagctgccagtacttctgcttcacccc 210
           ||||| ||||| || ||||||||||| || || |  |||||||| ||||||||||||||
Sbjct: 989 tctgcttggcaaactgggaggtggtaagtatccaattgccagtatttctgcttcacccc 931



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 239 ttgacggggagggggatgaactgcgtcgagta 270
           ||||| ||||| ||||||||||| ||||||||
Sbjct: 902 ttgactgggagcgggatgaactgtgtcgagta 871
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 152      tctgcctggcagacggggaggtggtaggtgtcgagctgccagtacttctgcttcacccc 210
                ||||| ||||| || ||||||||||| || || |  |||||||| ||||||||||||||
Sbjct: 31172790 tctgcttggcaaactgggaggtggtaagtatccaattgccagtatttctgcttcacccc 31172848



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 239      ttgacggggagggggatgaactgcgtcgagta 270
                ||||| ||||| ||||||||||| ||||||||
Sbjct: 31172877 ttgactgggagcgggatgaactgtgtcgagta 31172908
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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
             sequence
          Length = 128017

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 152   tctgcctggcagacggggaggtggtaggtgtcgagctgccagtacttctgcttcacccc 210
             ||||| ||||| || ||||||||||| || || |  |||||||| ||||||||||||||
Sbjct: 93431 tctgcttggcaaactgggaggtggtaagtatccaattgccagtatttctgcttcacccc 93489



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 239   ttgacggggagggggatgaactgcgtcgagta 270
             ||||| ||||| ||||||||||| ||||||||
Sbjct: 93518 ttgactgggagcgggatgaactgtgtcgagta 93549
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 152      tctgcctggcagacggggaggtggtaggtgtcgagctgccagtacttctgcttcacccc 210
                ||||| ||||| || ||||||||||| || || |  |||||||| ||||||||||||||
Sbjct: 31263313 tctgcttggcaaactgggaggtggtaagtatccaattgccagtatttctgcttcacccc 31263371



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 239      ttgacggggagggggatgaactgcgtcgagta 270
                ||||| ||||| ||||||||||| ||||||||
Sbjct: 31263400 ttgactgggagcgggatgaactgtgtcgagta 31263431
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>dbj|AK101534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C14, full
            insert sequence
          Length = 1492

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 152  tctgcctggcagacggggaggtggtaggtgtcgagctgccagtacttctgcttcacccc 210
            ||||| ||||| || ||||||||||| || || |  |||||||| ||||||||||||||
Sbjct: 1021 tctgcttggcaaactgggaggtggtaagtatccaattgccagtatttctgcttcacccc 963



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 239 ttgacggggagggggatgaactgcgtcgagta 270
           ||||| ||||| ||||||||||| ||||||||
Sbjct: 934 ttgactgggagcgggatgaactgtgtcgagta 903
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>dbj|AK064205.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E04, full
            insert sequence
          Length = 1473

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 152  tctgcctggcagacggggaggtggtaggtgtcgagctgccagtacttctgcttcacccc 210
            ||||| ||||| || ||||||||||| || || |  |||||||| ||||||||||||||
Sbjct: 1008 tctgcttggcaaactgggaggtggtaagtatccaattgccagtatttctgcttcacccc 950



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 239 ttgacggggagggggatgaactgcgtcgagta 270
           ||||| ||||| ||||||||||| ||||||||
Sbjct: 921 ttgactgggagcgggatgaactgtgtcgagta 890
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>gb|AC147816.2| Xenopus tropicalis clone CH216-106C24, complete sequence
          Length = 152642

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 219    cctcctccttgagggagtcctt 240
              ||||||||||||||||||||||
Sbjct: 115232 cctcctccttgagggagtcctt 115211
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>gb|AC166101.4| Mus musculus BAC clone RP23-385P23 from chromosome 6, complete sequence
          Length = 223116

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   tcaccccctcccacacctcct 224
             |||||||||||||||||||||
Sbjct: 17269 tcaccccctcccacacctcct 17249
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>gb|AC149164.2| Xenopus tropicalis clone ISB-3O21, complete sequence
          Length = 63312

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 219   cctcctccttgagggagtcct 239
             |||||||||||||||||||||
Sbjct: 44141 cctcctccttgagggagtcct 44121
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>gb|AC126429.4| Mus musculus BAC clone RP24-403O23 from chromosome 6, complete sequence
          Length = 152532

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   tcaccccctcccacacctcct 224
             |||||||||||||||||||||
Sbjct: 58063 tcaccccctcccacacctcct 58083
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>emb|AL390760.25| Human DNA sequence from clone RP11-370F5 on chromosome 9 Contains the 3'
              emd of novel gene (MGC11115), the NINJ1 gene for ninjurin
              1, a novel gene, the 5' end of the PRKWNK2 gene for protein
              kinase, lysine deficient 2 (WNK2, NY-CO-43, SDCCAG43,
              P/OKcl.13) and two CpG islands, complete sequence
          Length = 175797

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 213    cccacacctcctccttgaggg 233
              |||||||||||||||||||||
Sbjct: 137798 cccacacctcctccttgaggg 137778
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>emb|AL160004.18| Human DNA sequence from clone RP5-1068B5 on chromosome 1q42.11-43
             Contains a pseudogene similar to part of ribosomal protein
             L21 (RPL21), the ACTA1 gene for actin, alpha 1, skeletal
             muscle, the 3' end of the NUP133 gene for nucleoporin
             133kDa and two CpG islands, complete sequence
          Length = 86173

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   tcaccccctcccacacctcct 224
             |||||||||||||||||||||
Sbjct: 84567 tcaccccctcccacacctcct 84547
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>emb|AL139252.8| Human DNA sequence from clone RP4-679K16 on chromosome 1q42.13-43
           Contains part of the NUP133 gene for nucleoporin 133kDa,
           complete sequence
          Length = 25069

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 tcaccccctcccacacctcct 224
           |||||||||||||||||||||
Sbjct: 394 tcaccccctcccacacctcct 374
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 210    cctcccacacctcctccttga 230
              |||||||||||||||||||||
Sbjct: 799505 cctcccacacctcctccttga 799485
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>gb|AY365053.1| Ralstonia eutropha JMP134 plasmid pJP4, complete sequence
          Length = 87688

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   cgccagctccagcgccacca 299
             ||||||||||||||||||||
Sbjct: 53541 cgccagctccagcgccacca 53560
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>gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, complete sequence
          Length = 169321

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ccccctcccacacctcctcc 226
             ||||||||||||||||||||
Sbjct: 67192 ccccctcccacacctcctcc 67173
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>gb|AF461013.1| Klebsiella pneumoniae strain M426 MerR, MerT (merT), MerP (merP),
            MerC (merC), MerA (merA), MerD (merD), and URF-1 genes,
            complete cds
          Length = 4256

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  cgccagctccagcgccacca 299
            ||||||||||||||||||||
Sbjct: 2611 cgccagctccagcgccacca 2592
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>gb|AY333434.1| Salmonella typhimurium plasmid pU302L, complete sequence
          Length = 84514

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   cgccagctccagcgccacca 299
             ||||||||||||||||||||
Sbjct: 68016 cgccagctccagcgccacca 67997
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>ref|XM_323996.1| Neurospora crassa OR74A predicted protein (NCU04641.1) partial mRNA
          Length = 1674

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 ccccctcccacacctcctcc 226
           ||||||||||||||||||||
Sbjct: 574 ccccctcccacacctcctcc 555
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>gb|AC150282.1| X. tropicalis BAC clone containing gene for BMP7, complete sequence
          Length = 49158

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cctcctccttgagggagtcc 238
             ||||||||||||||||||||
Sbjct: 17056 cctcctccttgagggagtcc 17075
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>ref|NM_013365.3| Homo sapiens golgi associated, gamma adaptin ear containing, ARF
            binding protein 1 (GGA1), transcript variant 1, mRNA
          Length = 3163

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  ccagctccagcgccaccagc 301
            ||||||||||||||||||||
Sbjct: 1768 ccagctccagcgccaccagc 1787
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>ref|NM_001001560.1| Homo sapiens golgi associated, gamma adaptin ear containing, ARF
            binding protein 1 (GGA1), transcript variant 2, mRNA
          Length = 2898

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  ccagctccagcgccaccagc 301
            ||||||||||||||||||||
Sbjct: 1507 ccagctccagcgccaccagc 1526
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>gb|BC044629.1| Homo sapiens golgi associated, gamma adaptin ear containing, ARF
            binding protein 1, transcript variant 2, mRNA (cDNA clone
            MGC:52130 IMAGE:5796877), complete cds
          Length = 2545

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  ccagctccagcgccaccagc 301
            ||||||||||||||||||||
Sbjct: 1158 ccagctccagcgccaccagc 1177
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>ref|XM_954091.1| Neurospora crassa OR74A hypothetical protein (NCU04641.1) partial
           mRNA
          Length = 1674

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 ccccctcccacacctcctcc 226
           ||||||||||||||||||||
Sbjct: 574 ccccctcccacacctcctcc 555
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 280     cgccagctccagcgccacca 299
               ||||||||||||||||||||
Sbjct: 6164233 cgccagctccagcgccacca 6164214
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>ref|XM_994570.1| PREDICTED: Mus musculus RNA binding motif protein 22, transcript
            variant 1 (Rbm22), mRNA
          Length = 3717

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  cttctgcttcaccccctccc 215
            ||||||||||||||||||||
Sbjct: 3320 cttctgcttcaccccctccc 3301
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>ref|XM_901661.2| PREDICTED: Mus musculus RNA binding motif protein 22, transcript
            variant 3 (Rbm22), mRNA
          Length = 3717

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  cttctgcttcaccccctccc 215
            ||||||||||||||||||||
Sbjct: 3320 cttctgcttcaccccctccc 3301
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>gb|AC073336.6| Homo sapiens BAC clone RP11-476H24 from 7, complete sequence
          Length = 166261

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    ccctcccacacctcctcctt 228
              ||||||||||||||||||||
Sbjct: 122380 ccctcccacacctcctcctt 122399
to top
>gb|AF071413.3| Assembled sequence of transposon Tn21 containing transposition genes,
             the integron In2, and the mercury resistance operon
          Length = 19672

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   cgccagctccagcgccacca 299
             ||||||||||||||||||||
Sbjct: 17130 cgccagctccagcgccacca 17149
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>gb|CP000355.1| Ralstonia metallidurans CH34 plasmid pMOL28, complete sequence
          Length = 171459

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cgccagctccagcgccacca 299
           ||||||||||||||||||||
Sbjct: 976 cgccagctccagcgccacca 957
to top
>gb|CP000354.1| Ralstonia metallidurans CH34 plasmid pMOL30, complete sequence
          Length = 233720

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    cgccagctccagcgccacca 299
              ||||||||||||||||||||
Sbjct: 224821 cgccagctccagcgccacca 224802
to top
>emb|Y09025.1|ECMERTREL Enterobacter cloacae DNA, mosaic mercury resistance transposable
            element (mer-operon)
          Length = 8012

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  cgccagctccagcgccacca 299
            ||||||||||||||||||||
Sbjct: 2596 cgccagctccagcgccacca 2577
to top
>gb|AC124431.4| Mus musculus BAC clone RP24-243J21 from chromosome 18, complete
             sequence
          Length = 143099

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   tcaccccctcccacacctcc 223
             ||||||||||||||||||||
Sbjct: 72280 tcaccccctcccacacctcc 72261
to top
>emb|Z83844.5|HS37E16 Human DNA sequence from clone RP1-37E16 on chromosome 22 Contains the
            3' part of the gene for a novel VHS domain containing
            protein similar to predicted worm and human proteins, the
            SH3BP1 gene for SH3-domain binding protein 1, the gene
            for a novel protein similar to nitrophenylphosphatases
            from various organisms, the LGALS1 gene for soluble
            galactoside-binding lectin 1, a novel gene and the gene
            for a novel protein similar to mouse RIP3 (P116
            Rho-interacting protein) and rat RB109, complete sequence
          Length = 166181

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  ccagctccagcgccaccagc 301
            ||||||||||||||||||||
Sbjct: 4924 ccagctccagcgccaccagc 4943
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>gb|CP000093.1| Ralstonia eutropha JMP134 plasmid 1, complete sequence
          Length = 87688

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   cgccagctccagcgccacca 299
             ||||||||||||||||||||
Sbjct: 53541 cgccagctccagcgccacca 53560
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>gb|AC158217.4| Mus musculus chromosome 5, clone RP24-377B20, complete sequence
          Length = 160008

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   ccccctcccacacctcctcc 226
             ||||||||||||||||||||
Sbjct: 25728 ccccctcccacacctcctcc 25747
to top
>emb|Z00027.1|ISTN501 Transposon Tn501 from Pseudomonas aeruginosa plasmid pVS1 encoding
            mercuric ion resistance determinant. Genes: merR
            (regulation), merT and merP (transport), merA
            (reductase), merD (not known); two open reading frames of
            unknown function (possibly one is merE); res site, tnpR
            and tnpA (transposition)
          Length = 8355

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  cgccagctccagcgccacca 299
            ||||||||||||||||||||
Sbjct: 2187 cgccagctccagcgccacca 2168
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>emb|Y10102.1|ECTREMER2 Escherichia coli partial merA gene, merD gene and 3 ORF's
          Length = 3624

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cgccagctccagcgccacca 299
           ||||||||||||||||||||
Sbjct: 273 cgccagctccagcgccacca 254
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>emb|Y08992.1|EAMMRTRAN E.agglomerans pKLH272 incomplete unit of mosaic mercury resistance
            transposon
          Length = 4824

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  cgccagctccagcgccacca 299
            ||||||||||||||||||||
Sbjct: 2712 cgccagctccagcgccacca 2693
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>emb|X90708.2|AEPARREPG Ralstonia metallidurans CH34 plasmid pMOL28
          Length = 171461

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    cgccagctccagcgccacca 299
              ||||||||||||||||||||
Sbjct: 143760 cgccagctccagcgccacca 143779
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>emb|X71400.2|AECZCOP5R Ralstonia metallidurans CH34 plasmid pMOL30
          Length = 233755

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    cgccagctccagcgccacca 299
              ||||||||||||||||||||
Sbjct: 128751 cgccagctccagcgccacca 128770
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>emb|BX664015.1| Serratia marcescens plasmid R478
          Length = 274762

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    cgccagctccagcgccacca 299
              ||||||||||||||||||||
Sbjct: 107530 cgccagctccagcgccacca 107549
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>emb|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmid contig 5F3
          Length = 83192

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ccccctcccacacctcctcc 226
             ||||||||||||||||||||
Sbjct: 36001 ccccctcccacacctcctcc 35982
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>emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1
          Length = 218160

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    cgccagctccagcgccacca 299
              ||||||||||||||||||||
Sbjct: 172815 cgccagctccagcgccacca 172834



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    cgccagctccagcgccacca 299
              ||||||||||||||||||||
Sbjct: 117063 cgccagctccagcgccacca 117044
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>emb|AJ564903.1|UBA564903 Uncultured bacterium IncP-1beta multiresistance plasmid pB10
          Length = 64508

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   cgccagctccagcgccacca 299
             ||||||||||||||||||||
Sbjct: 60697 cgccagctccagcgccacca 60716
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>emb|AJ551280.1|PSP551280 Pseudomonas sp. A19-1 transposon Tn5060
          Length = 8667

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 280  cgccagctccagcgccacca 299
            ||||||||||||||||||||
Sbjct: 6125 cgccagctccagcgccacca 6144
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>emb|AJ418049.1|CFR418049 Citrobacter freundii partial merA gene for putative mercuric
           reductase
          Length = 1144

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cgccagctccagcgccacca 299
           ||||||||||||||||||||
Sbjct: 420 cgccagctccagcgccacca 401
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>emb|AJ251540.1|ALW251540 Acinetobacter lwoffii NC7-1 partial mobilizable plasmid pKLH103
           including pKLH1-like transposon merA-D region
          Length = 1686

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cgccagctccagcgccacca 299
           ||||||||||||||||||||
Sbjct: 168 cgccagctccagcgccacca 149
to top
>emb|AJ250010.1|ALW250010 Acinetobacter lwoffii partial mobilizable plasmid pKLH102 including
           pKLH1-like transposon merA gene (partial), strain TC41-3
          Length = 661

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cgccagctccagcgccacca 299
           ||||||||||||||||||||
Sbjct: 68  cgccagctccagcgccacca 49
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>emb|AJ851089.1| Uncultured bacterium pRSB107 plasmid
          Length = 120592

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   cgccagctccagcgccacca 299
             ||||||||||||||||||||
Sbjct: 31367 cgccagctccagcgccacca 31348
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>emb|AL110219.1|HSM800873 Homo sapiens mRNA; cDNA DKFZp434A033 (from clone DKFZp434A033)
          Length = 2709

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  ccagctccagcgccaccagc 301
            ||||||||||||||||||||
Sbjct: 1314 ccagctccagcgccaccagc 1333
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>dbj|AK122898.1| Homo sapiens cDNA FLJ16562 fis, clone SYNOV4005256, highly  similar
            to ADP-ribosylation factor binding protein GGA1
          Length = 3205

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  ccagctccagcgccaccagc 301
            ||||||||||||||||||||
Sbjct: 1836 ccagctccagcgccaccagc 1855
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>dbj|AK095427.1| Homo sapiens cDNA FLJ38108 fis, clone D3OST2001670, highly similar
           to ADP-ribosylation factor binding protein GGA1
          Length = 2049

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 ccagctccagcgccaccagc 301
           ||||||||||||||||||||
Sbjct: 680 ccagctccagcgccaccagc 699
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>emb|CR609702.1| full-length cDNA clone CS0DG007YE15 of B cells (Ramos cell line) of
            Homo sapiens (human)
          Length = 2735

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  ccagctccagcgccaccagc 301
            ||||||||||||||||||||
Sbjct: 1426 ccagctccagcgccaccagc 1445
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>dbj|AK092417.1| Homo sapiens cDNA FLJ35098 fis, clone PLACE6006266, highly similar
           to ADP-ribosylation factor binding protein GGA1
          Length = 1806

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 ccagctccagcgccaccagc 301
           ||||||||||||||||||||
Sbjct: 437 ccagctccagcgccaccagc 456
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>dbj|AK075256.1| Homo sapiens cDNA FLJ90775 fis, clone THYRO1001071, highly similar to
            ADP-ribosylation factor binding protein GGA1
          Length = 3139

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  ccagctccagcgccaccagc 301
            ||||||||||||||||||||
Sbjct: 1768 ccagctccagcgccaccagc 1787
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>emb|CR596724.1| full-length cDNA clone CS0DB008YM24 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 2058

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 ccagctccagcgccaccagc 301
           ||||||||||||||||||||
Sbjct: 716 ccagctccagcgccaccagc 735
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>dbj|AK165277.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
            library, clone:F430008C17 product:hypothetical Zn-finger,
            C-x8-C-x5-C-x3-H type containing protein, full insert
            sequence
          Length = 3542

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  cttctgcttcaccccctccc 215
            ||||||||||||||||||||
Sbjct: 3289 cttctgcttcaccccctccc 3270
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>gb|DQ125241.2| Escherichia coli integron In117 IntI1 (intI1), EstX (estX), AadA1
             (aadA1), QacEdelta1 (qacEdelta1), Sul1 (sul1), putative
             recombinase, beta lactamase CTX-M-2 (blaCTX-M-2),
             ORF3-QacEdelta1 fusion protein, Sul1 (sul1), IstB (istB),
             IstA (istA), TniBdelta1 (tniBdelta1), TniA (tniA), unknown
             (merE), MerD (merD), MerA (merA), MerC (merC), MerP
             (merP), and MerT (merT) genes, complete cds, and unknown
             genes
          Length = 20032

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   cgccagctccagcgccacca 299
             ||||||||||||||||||||
Sbjct: 17947 cgccagctccagcgccacca 17966
to top
>gb|AC153923.4| Mus musculus 6 BAC RP23-82I13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 248275

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    caccccctcccacacctcct 224
              ||||||||||||||||||||
Sbjct: 147298 caccccctcccacacctcct 147317
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>gb|AF348706.1|AF348706 Shigella flexneri large virulence plasmid pWR501, complete plasmid
              sequence
          Length = 221851

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    cgccagctccagcgccacca 299
              ||||||||||||||||||||
Sbjct: 200899 cgccagctccagcgccacca 200880
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>gb|AF457211.1| Escherichia coli Tn5075, complete sequence
          Length = 11298

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  cgccagctccagcgccacca 299
            ||||||||||||||||||||
Sbjct: 3870 cgccagctccagcgccacca 3851
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>gb|DQ302790.1| Spiromyces aspiralis isolate AFTOL-ID 185 RNA polymerase II second
           largest subunit precursor (RPB2) gene, partial cds
          Length = 3174

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   ggcgtgacctgatcctgaac 24
           ||||||||||||||||||||
Sbjct: 971 ggcgtgacctgatcctgaac 952
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 183     cgagctgccagtacttctgc 202
               ||||||||||||||||||||
Sbjct: 4145938 cgagctgccagtacttctgc 4145919
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>gb|AF190862.1|AF190862 Homo sapiens ADP-ribosylation factor binding protein GGA1 (GGA1)
            mRNA, complete cds
          Length = 2800

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  ccagctccagcgccaccagc 301
            ||||||||||||||||||||
Sbjct: 1418 ccagctccagcgccaccagc 1437
to top
>gb|AF233521.1|AF233521 Homo sapiens Golgi-associated, gamma-adaptin ear containing,
            ARF-binding protein 1 (GGA1) gene, complete cds
          Length = 2040

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  ccagctccagcgccaccagc 301
            ||||||||||||||||||||
Sbjct: 1425 ccagctccagcgccaccagc 1444
to top
>gb|AF218584.1|AF218584 Homo sapiens GGA1 mRNA, complete cds
          Length = 1924

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  ccagctccagcgccaccagc 301
            ||||||||||||||||||||
Sbjct: 1407 ccagctccagcgccaccagc 1426
to top
>gb|J01730.1|R1004 Plasmid R100 putative (insA), putative (insB), merR (merR), putative
            (merT), merC (merC), mercuric reductase (merA), and
            putative (merD) genes, complete cds
          Length = 5747

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  cgccagctccagcgccacca 299
            ||||||||||||||||||||
Sbjct: 3471 cgccagctccagcgccacca 3452
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>emb|CR456493.1| Homo sapiens GGA1 full length open reading frame (ORF) cDNA clone
            (cDNA clone C22ORF:pGEM.GGA1)
          Length = 2196

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  ccagctccagcgccaccagc 301
            ||||||||||||||||||||
Sbjct: 1590 ccagctccagcgccaccagc 1609
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>emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Multi-Drug Resistance in
             Acinetobacter baumannii
          Length = 100001

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   cgccagctccagcgccacca 299
             ||||||||||||||||||||
Sbjct: 56013 cgccagctccagcgccacca 56032
to top
>gb|AC147891.2| Xenopus tropicalis clone CH216-2E23, complete sequence
          Length = 209003

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cctcctccttgagggagtcc 238
             ||||||||||||||||||||
Sbjct: 78312 cctcctccttgagggagtcc 78331
to top
>gb|AY509004.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
             plasmid pSC138, complete sequence
          Length = 138742

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   cgccagctccagcgccacca 299
             ||||||||||||||||||||
Sbjct: 16696 cgccagctccagcgccacca 16677
to top
>gb|U80214.1|PSU80214 Pseudomonas stutzeri plasmid pPB MerR (merR), MerT (merT), MerP
            (merP), MerA (merA), MerD (merD), Urf1 (urf1), Urf2
            (urf2), delta-tniA-like protein, and DNA-invertase genes,
            complete cds; and delta-tniR pseudogene, complete
            sequence
          Length = 6769

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  cgccagctccagcgccacca 299
            ||||||||||||||||||||
Sbjct: 2222 cgccagctccagcgccacca 2203
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>gb|AC149216.5| Mus musculus BAC clone RP24-194H8 from 18, complete sequence
          Length = 193186

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    cttctgcttcaccccctccc 215
              ||||||||||||||||||||
Sbjct: 174108 cttctgcttcaccccctccc 174127
to top
>gb|K03089.1|NR1MER Plasmid NR1 mercury resistance (mer) operon
          Length = 3763

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  cgccagctccagcgccacca 299
            ||||||||||||||||||||
Sbjct: 2607 cgccagctccagcgccacca 2588
to top
>gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, complete sequence
          Length = 99448

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   cgccagctccagcgccacca 299
             ||||||||||||||||||||
Sbjct: 24565 cgccagctccagcgccacca 24584
to top
>dbj|AP000342.1| Plasmid R100 DNA, complete sequence
          Length = 94281

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  cgccagctccagcgccacca 299
            ||||||||||||||||||||
Sbjct: 2601 cgccagctccagcgccacca 2582


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,246,756
Number of Sequences: 3902068
Number of extensions: 2246756
Number of successful extensions: 45618
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45412
Number of HSP's gapped (non-prelim): 204
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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