>LRRK1_MOUSE (Q3UHC2) Leucine-rich repeat serine/threonine-protein kinase 1 (EC|
           2.7.11.1)
          Length = 2014

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 22/75 (29%), Positives = 38/75 (50%)
 Frame = +2

Query: 173 SVRVQTSNYKLPWSHSTYQLDVALPSHRGSLSEGLIPSLVRKIV*IICSMKTKNPELSRT 352
           ++RV+ S+ KLPW    + LD++       LS   +PSL   I   + ++K  N  LS  
Sbjct: 255 ALRVKWSHLKLPWVDLDWLLDISCQITELDLSANCLPSLPSIIPWGLINLKKLN--LSNN 312

Query: 353 SVPKITYIASMDGIM 397
            + ++  + S D I+
Sbjct: 313 QLGELPCVQSSDEII 327

>MGA2_YEAST (P40578) Protein MGA2|
          Length = 1113

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = +1

Query: 7   SMAPMQNCNQQKSCRENHNHVPTSRTIMLIFQRPRLPSRHASGNGGAFVTLKCCKFSQGA 186
           +M P  +  Q  S + N+N++P+   +        +PS+    NGG  VTL  C F  G 
Sbjct: 509 TMNPALHSMQDFSMKNNNNNLPSINRV--------IPSQGPI-NGGIEVTLLGCNFKDGL 559

Query: 187 NLQLQITMVAFYLSTRC 237
           +++    +    LST+C
Sbjct: 560 SVKFGSNLA---LSTQC 573

>TRAF6_HUMAN (Q9Y4K3) TNF receptor-associated factor 6 (Interleukin 1 signal|
           transducer) (RING finger protein 85)
          Length = 522

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 1   DQSMAPMQNCNQQKSCRENHNHVPTSRTIMLIFQRPRLPSRHASGNG 141
           DQS AP+         R+NH  +  ++  +L FQRP +P R+  G G
Sbjct: 436 DQSEAPV---------RQNHEEIMDAKPELLAFQRPTIP-RNPKGFG 472

>TRAF6_MOUSE (P70196) TNF receptor-associated factor 6|
          Length = 530

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 49  RENHNHVPTSRTIMLIFQRPRLPSRHASGNGGAFVTLKCCKFSQGANLQLQITMVAFYLS 228
           R+NH  V  ++  +L FQRP +P          F+ L+  +  QG  ++    +V   +S
Sbjct: 451 RQNHEEVMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QGTFIKDDTLLVRCEVS 508

Query: 229 TR 234
           TR
Sbjct: 509 TR 510

>THIED_GEOSL (P61422) Bifunctional thiED protein [Includes: Thiamine-phosphate|
           pyrophosphorylase (EC 2.5.1.3) (TMP pyrophosphorylase)
           (TMP-PPase) (Thiamine-phosphate synthase);
           Phosphomethylpyrimidine kinase (EC 2.7.4.7)
           (HMP-phosphate kinase) (HMP-P kina
          Length = 490

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +1

Query: 97  FQRPRLPSRHASGNGGAFVTLKCCKFSQGANLQLQITMVAFYLSTRCCFAQPSWKSK*RL 276
           F  PR+ S++  G G  F +      +QG  L+  I     Y++     AQP  +    +
Sbjct: 419 FVSPRILSKNTHGTGCTFASAIATYLAQGDPLREAIARAKRYITAAIRLAQPLGRGHGPV 478

Query: 277 DSKLGQED 300
           +  L  ED
Sbjct: 479 NHILAAED 486

>GDN_MOUSE (Q07235) Glia-derived nexin precursor (GDN) (Protease nexin I)|
           (PN-1) (Serine protease-inhibitor 4)
          Length = 397

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 200 KLPWSHSTYQLDVALPSHRGSLSEGLIPSLVRKIV*IICSMKTKNPELSRTSVPKITYIA 379
           +LP+   +  + +ALP+   +    +IP +  K   I   M T  P+  +  +PK T +A
Sbjct: 243 ELPYHGESISMLIALPTESSTPLSAIIPHITTKT--IDSWMNTMVPKRMQLVLPKFTAVA 300

Query: 380 SMD 388
             D
Sbjct: 301 QTD 303

>ACOC_ARATH (Q42560) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate|
           hydro-lyase) (Aconitase)
          Length = 898

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 9   NGTNAELQSTKILSGKPQSCTNEPDNNAHISKATIAIPAC 128
           NGT A+L+   ++     SCTN  + +  +  A +A  AC
Sbjct: 422 NGTTAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKAC 461

>SPT23_YEAST (P35210) Protein SPT23|
          Length = 1082

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +1

Query: 55  NHNHVPTSRTIMLIFQRPRLPSRHASGNGGAFVTLKCCKFSQGANLQ----LQITMVAFY 222
           NHN VP +       QR  +P++  S NGG  VTL   KF QG  ++    + ++   + 
Sbjct: 496 NHNSVPVALNNKPSIQRV-IPAQ-GSINGGIEVTLLGSKFKQGLIIKFGENIALSSQCWN 553

Query: 223 LSTRCCFAQPSWK 261
            ST   +  PS K
Sbjct: 554 ESTMVTYLPPSSK 566

>EMBC_MYCBO (Q7TVN4) Probable arabinosyltransferase C (EC 2.4.2.-)|
          Length = 1094

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 102 LKYEHYCPARWYMIVVFPTRFLLIAILHWCH 10
           +++  + PARW+ I    T  L+IA+L W H
Sbjct: 257 MRHRRFLPARWWSIGGLDT--LVIAVLVWWH 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,515,700
Number of Sequences: 219361
Number of extensions: 1265293
Number of successful extensions: 2849
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2846
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)