ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465289.1| Oryza sativa (japonica cultivar-group), mRNA 123 5e-25
2ref|XM_506793.1| PREDICTED Oryza sativa (japonica cultivar-group... 123 5e-25
3dbj|AK102973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 5e-25
4dbj|AK059937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 5e-25
5gb|AC102658.9| Mus musculus chromosome 1, clone RP23-82B23, comp... 44 0.34
6gb|AC163899.3| Mus musculus chromosome 1, clone RP24-383F13, com... 44 0.34
7emb|AL035251.11|HS705O1 Human DNA sequence from clone RP4-705O1 ... 42 1.3
8gb|AC097674.6| Rattus norvegicus 2 CH230-75D18 (Children's Hospi... 42 1.3
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
10dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
11emb|CT030196.9| Mouse DNA sequence from clone RP23-282B14 on chr... 42 1.3
12gb|AC114640.11| Mus musculus chromosome 17, clone RP24-125I7, co... 40 5.3
13gb|AC150546.2| Bos taurus BAC CH240-77D21 (Children's Hospital ... 40 5.3
14emb|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, ... 40 5.3
15emb|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BA... 40 5.3
16emb|CR847811.1| Human DNA sequence from clone XX-NCIH2171_5AI03,... 40 5.3
17emb|CR847576.1| Human DNA sequence from clone XX-NCIH2171_5M12, ... 40 5.3
18gb|AC010054.7| Drosophila melanogaster 3L BAC RP98-15E10 (Roswel... 40 5.3
19emb|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, B... 40 5.3
20dbj|AK057922.1| Homo sapiens cDNA FLJ25193 fis, clone JTH00761 40 5.3
21gb|AC154853.2| Mus musculus BAC clone RP23-21C15 from 17, comple... 40 5.3
22emb|AL132780.5|CNS01DTK Human chromosome 14 DNA sequence BAC R-2... 40 5.3
23gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62... 40 5.3
24emb|AL445384.3|CNS07ED0 Human chromosome 14 DNA sequence BAC R-4... 40 5.3 
>ref|XM_465289.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1190

 Score =  123 bits (62), Expect = 5e-25
 Identities = 134/158 (84%)
 Strand = Plus / Minus

                                                                        
Query: 237  ttgctttgcccagccatcgtggaagtctaagtgaaggcttgattccaagcttggtcagga 296
            |||||||| ||||||||| |||| |||| | ||||||||| ||||| ||||| |||||||
Sbjct: 1081 ttgctttgtccagccatcttggaggtctcaatgaaggctttattccgagcttagtcagga 1022

                                                                        
Query: 297  agattgtgtaaattatatgcagtatgaagacaaagaatccagaattaagtagaaccagtg 356
            | ||||| || |||||||| |||| ||||| |||||||||| | || ||||||| ||| |
Sbjct: 1021 atattgtatacattatatgtagtaggaagataaagaatccacagttgagtagaagcagcg 962

                                                  
Query: 357  tcccaaagataacatatattgcatccatggatggaatc 394
            | |||||||  ||||| |||||||||||||| ||||||
Sbjct: 961  ttccaaagagtacataaattgcatccatggaaggaatc 924
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>ref|XM_506793.1| PREDICTED Oryza sativa (japonica cultivar-group), P0476C12.24 mRNA
          Length = 1340

 Score =  123 bits (62), Expect = 5e-25
 Identities = 134/158 (84%)
 Strand = Plus / Minus

                                                                        
Query: 237  ttgctttgcccagccatcgtggaagtctaagtgaaggcttgattccaagcttggtcagga 296
            |||||||| ||||||||| |||| |||| | ||||||||| ||||| ||||| |||||||
Sbjct: 1055 ttgctttgtccagccatcttggaggtctcaatgaaggctttattccgagcttagtcagga 996

                                                                        
Query: 297  agattgtgtaaattatatgcagtatgaagacaaagaatccagaattaagtagaaccagtg 356
            | ||||| || |||||||| |||| ||||| |||||||||| | || ||||||| ||| |
Sbjct: 995  atattgtatacattatatgtagtaggaagataaagaatccacagttgagtagaagcagcg 936

                                                  
Query: 357  tcccaaagataacatatattgcatccatggatggaatc 394
            | |||||||  ||||| |||||||||||||| ||||||
Sbjct: 935  ttccaaagagtacataaattgcatccatggaaggaatc 898
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>dbj|AK102973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115K18, full
            insert sequence
          Length = 1340

 Score =  123 bits (62), Expect = 5e-25
 Identities = 134/158 (84%)
 Strand = Plus / Minus

                                                                        
Query: 237  ttgctttgcccagccatcgtggaagtctaagtgaaggcttgattccaagcttggtcagga 296
            |||||||| ||||||||| |||| |||| | ||||||||| ||||| ||||| |||||||
Sbjct: 1055 ttgctttgtccagccatcttggaggtctcaatgaaggctttattccgagcttagtcagga 996

                                                                        
Query: 297  agattgtgtaaattatatgcagtatgaagacaaagaatccagaattaagtagaaccagtg 356
            | ||||| || |||||||| |||| ||||| |||||||||| | || ||||||| ||| |
Sbjct: 995  atattgtatacattatatgtagtaggaagataaagaatccacagttgagtagaagcagcg 936

                                                  
Query: 357  tcccaaagataacatatattgcatccatggatggaatc 394
            | |||||||  ||||| |||||||||||||| ||||||
Sbjct: 935  ttccaaagagtacataaattgcatccatggaaggaatc 898
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>dbj|AK059937.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D11, full
            insert sequence
          Length = 1190

 Score =  123 bits (62), Expect = 5e-25
 Identities = 134/158 (84%)
 Strand = Plus / Minus

                                                                        
Query: 237  ttgctttgcccagccatcgtggaagtctaagtgaaggcttgattccaagcttggtcagga 296
            |||||||| ||||||||| |||| |||| | ||||||||| ||||| ||||| |||||||
Sbjct: 1081 ttgctttgtccagccatcttggaggtctcaatgaaggctttattccgagcttagtcagga 1022

                                                                        
Query: 297  agattgtgtaaattatatgcagtatgaagacaaagaatccagaattaagtagaaccagtg 356
            | ||||| || |||||||| |||| ||||| |||||||||| | || ||||||| ||| |
Sbjct: 1021 atattgtatacattatatgtagtaggaagataaagaatccacagttgagtagaagcagcg 962

                                                  
Query: 357  tcccaaagataacatatattgcatccatggatggaatc 394
            | |||||||  ||||| |||||||||||||| ||||||
Sbjct: 961  ttccaaagagtacataaattgcatccatggaaggaatc 924
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>gb|AC102658.9| Mus musculus chromosome 1, clone RP23-82B23, complete sequence
          Length = 186097

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 80    ggacaataatgctcatatttcaaagg 105
             |||||||||| |||||||||||||||
Sbjct: 76147 ggacaataatcctcatatttcaaagg 76122
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>gb|AC163899.3| Mus musculus chromosome 1, clone RP24-383F13, complete sequence
          Length = 227890

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 80     ggacaataatgctcatatttcaaagg 105
              |||||||||| |||||||||||||||
Sbjct: 132172 ggacaataatcctcatatttcaaagg 132147
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>emb|AL035251.11|HS705O1 Human DNA sequence from clone RP4-705O1 on chromosome 20q11.2 Contains a
              novel gene, complete sequence
          Length = 161888

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 285    gcttggtcaggaagattgtgt 305
              |||||||||||||||||||||
Sbjct: 143508 gcttggtcaggaagattgtgt 143528
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>gb|AC097674.6| Rattus norvegicus 2 CH230-75D18 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 227596

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 256   tggaagtctaagtgaaggcttgatt 280
             |||||||| ||||||||||||||||
Sbjct: 28338 tggaagtccaagtgaaggcttgatt 28314
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 350      accagtgtcccaaagataacatatattgcatccatggatggaatc 394
                ||||| || |||||||  ||||| |||||||||||||| ||||||
Sbjct: 13119491 accagcgttccaaagagtacataaattgcatccatggaaggaatc 13119535
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>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0476C12
          Length = 157570

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 350   accagtgtcccaaagataacatatattgcatccatggatggaatc 394
             ||||| || |||||||  ||||| |||||||||||||| ||||||
Sbjct: 96068 accagcgttccaaagagtacataaattgcatccatggaaggaatc 96112
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>emb|CT030196.9| Mouse DNA sequence from clone RP23-282B14 on chromosome 12, complete
              sequence
          Length = 215752

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 150    tgtaacactaaaatgctgcaaattc 174
              |||| ||||||||||||||||||||
Sbjct: 214032 tgtagcactaaaatgctgcaaattc 214056
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>gb|AC114640.11| Mus musculus chromosome 17, clone RP24-125I7, complete sequence
          Length = 190102

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    tgtaaattatatgcagtatg 322
              ||||||||||||||||||||
Sbjct: 159112 tgtaaattatatgcagtatg 159131
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>gb|AC150546.2| Bos taurus  BAC CH240-77D21 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 203152

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    attcagtcagggtgcaaacc 190
              ||||||||||||||||||||
Sbjct: 100346 attcagtcagggtgcaaacc 100365
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>emb|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 73
          Length = 194862

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    aagattgtgtaaattatatg 315
              ||||||||||||||||||||
Sbjct: 159017 aagattgtgtaaattatatg 158998
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>emb|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project)
          Length = 122322

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    aagattgtgtaaattatatg 315
              ||||||||||||||||||||
Sbjct: 108816 aagattgtgtaaattatatg 108835
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>emb|CR847811.1| Human DNA sequence from clone XX-NCIH2171_5AI03, complete sequence
          Length = 109177

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   atatgcagtatgaagacaaa 330
             ||||||||||||||||||||
Sbjct: 42946 atatgcagtatgaagacaaa 42927
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>emb|CR847576.1| Human DNA sequence from clone XX-NCIH2171_5M12, complete sequence
          Length = 98856

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   atatgcagtatgaagacaaa 330
             ||||||||||||||||||||
Sbjct: 46120 atatgcagtatgaagacaaa 46101
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>gb|AC010054.7| Drosophila melanogaster 3L BAC RP98-15E10 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 173109

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    attgcaatcaacaaaaatct 45
             ||||||||||||||||||||
Sbjct: 76195 attgcaatcaacaaaaatct 76176
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>emb|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, BAC clone T10C21
          Length = 77860

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   aagattgtgtaaattatatg 315
             ||||||||||||||||||||
Sbjct: 57902 aagattgtgtaaattatatg 57883
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>dbj|AK057922.1| Homo sapiens cDNA FLJ25193 fis, clone JTH00761
          Length = 2469

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 311  atatgcagtatgaagacaaa 330
            ||||||||||||||||||||
Sbjct: 2220 atatgcagtatgaagacaaa 2201
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>gb|AC154853.2| Mus musculus BAC clone RP23-21C15 from 17, complete sequence
          Length = 170353

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   tgtaaattatatgcagtatg 322
             ||||||||||||||||||||
Sbjct: 27420 tgtaaattatatgcagtatg 27439
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>emb|AL132780.5|CNS01DTK Human chromosome 14 DNA sequence BAC R-298I3 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 191946

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    atatgcagtatgaagacaaa 330
              ||||||||||||||||||||
Sbjct: 155555 atatgcagtatgaagacaaa 155574
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>gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62 of 83 of the complete
              sequence
          Length = 290640

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     attgcaatcaacaaaaatct 45
              ||||||||||||||||||||
Sbjct: 155089 attgcaatcaacaaaaatct 155070
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>emb|AL445384.3|CNS07ED0 Human chromosome 14 DNA sequence BAC R-460A13 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 160750

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 17     caatgcagaattgcaatcaacaaaaatc 44
              |||||||||| |||| ||||||||||||
Sbjct: 106328 caatgcagaaatgcattcaacaaaaatc 106301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,616,885
Number of Sequences: 3902068
Number of extensions: 3616885
Number of successful extensions: 62537
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62474
Number of HSP's gapped (non-prelim): 63
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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