>emb|X60343.1|HVGADPH H.vulgare GADPH mRNA for glycolytic glyceraldehyde-3-phosphate
            dehydrogenase
          Length = 1365

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                               
Query: 9    aaacatcaaacacttactcagggtggaaacatcaaacacttactcaggcaa 59
            |||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 1297 aaacatcaaacacttactcaggctgtaaacatcaaacacttactcaggcaa 1247

>emb|CR388032.9| Zebrafish DNA sequence from clone DKEY-22L9 in linkage group 23,
             complete sequence
          Length = 271754

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    tggaaacatcaaacactta 50
             |||||||||||||||||||
Sbjct: 50611 tggaaacatcaaacactta 50629



 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     ggaaacatcaaacactta 24
             ||||||||||||||||||
Sbjct: 50612 ggaaacatcaaacactta 50629

>gb|AF378301.1| Foot-and-mouth disease virus C C3 Resende polyprotein, leader
           proteinase region mRNA, partial cds
          Length = 615

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 36  aacatcaaacacttactca 54
           |||||||||||||||||||
Sbjct: 316 aacatcaaacacttactca 334



 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 10  aacatcaaacacttactca 28
           |||||||||||||||||||
Sbjct: 316 aacatcaaacacttactca 334

>gb|AY593809.1| Foot-and-mouth disease virus C5 isolate c5arg iso60, complete genome
          Length = 8191

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 36   aacatcaaacacttactca 54
            |||||||||||||||||||
Sbjct: 1410 aacatcaaacacttactca 1428



 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 10   aacatcaaacacttactca 28
            |||||||||||||||||||
Sbjct: 1410 aacatcaaacacttactca 1428

>gb|AY593807.1| Foot-and-mouth disease virus C3 isolate c3resende iso1, complete
            genome
          Length = 8192

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 36   aacatcaaacacttactca 54
            |||||||||||||||||||
Sbjct: 1410 aacatcaaacacttactca 1428



 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 10   aacatcaaacacttactca 28
            |||||||||||||||||||
Sbjct: 1410 aacatcaaacacttactca 1428

>gb|AC161345.4| Mus musculus chromosome 5, clone RP23-189N6, complete sequence
          Length = 177864

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    cagggtggaaacatcaaa 44
             ||||||||||||||||||
Sbjct: 54823 cagggtggaaacatcaaa 54806

>emb|CR848726.6| Zebrafish DNA sequence from clone CH211-244M8 in linkage group 2,
              complete sequence
          Length = 155408

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 34     gaaacatcaaacacttac 51
              ||||||||||||||||||
Sbjct: 141440 gaaacatcaaacacttac 141457



 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      gaaacatcaaacacttac 25
              ||||||||||||||||||
Sbjct: 141440 gaaacatcaaacacttac 141457

>emb|AL109865.36|HSG120K12 Human DNA sequence from clone GS1-120K12 on chromosome 1q25.3-31.2
              Contains the 5' end of the C1orf24 gene for chromosome 1
              open reading frame 24, the RNF2 gene for ring finger
              protein 2, a ferritin heavy polypeptide (FTH) pseudogene
              and the 3' end of the C1orf25 gene for chromosome 1 open
              reading frame 25, complete sequence
          Length = 201823

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 10     aacatcaaacacttactcagggtgga 35
              ||||||||||||||| |||| |||||
Sbjct: 178480 aacatcaaacacttattcagagtgga 178505

>gb|AC106128.6| Rattus norvegicus 1 BAC CH230-149H17 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 210385

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 3      agggggaaacatcaaaca 20
              ||||||||||||||||||
Sbjct: 149717 agggggaaacatcaaaca 149700

>emb|BX842687.13| Zebrafish DNA sequence from clone DKEY-97L11 in linkage group 7, complete
              sequence
          Length = 218252

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      gaagggggaaacatcaaa 18
              ||||||||||||||||||
Sbjct: 205760 gaagggggaaacatcaaa 205777

>emb|BX784034.8| Zebrafish DNA sequence from clone CH211-194O4 in linkage group 20,
              complete sequence
          Length = 187846

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      gaagggggaaacatcaaa 18
              ||||||||||||||||||
Sbjct: 148629 gaagggggaaacatcaaa 148646

>gb|AC108063.3| Homo sapiens BAC clone RP11-452J21 from 4, complete sequence
          Length = 160582

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 42     aaacacttactcaggcaa 59
              ||||||||||||||||||
Sbjct: 113731 aaacacttactcaggcaa 113748

>gb|AC154287.2| Mus musculus BAC clone RP24-484I9 from chromosome 14, complete sequence
          Length = 165637

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 18    acacttactcagggtgga 35
             ||||||||||||||||||
Sbjct: 91811 acacttactcagggtgga 91828

>gb|AC025471.6| Homo sapiens chromosome 5 clone RP11-138C1, complete sequence
          Length = 148607

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 9      aaacatcaaacacttact 26
              ||||||||||||||||||
Sbjct: 118139 aaacatcaaacacttact 118122



 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 35     aaacatcaaacacttact 52
              ||||||||||||||||||
Sbjct: 118139 aaacatcaaacacttact 118122

>gb|AC116615.5| Homo sapiens BAC clone CTD-2080B4 from 4, complete sequence
          Length = 132323

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 3     agggggaaacatcaaacactta 24
             |||||||| |||||||||||||
Sbjct: 43882 agggggaaccatcaaacactta 43861

>gb|AY593827.1| Foot-and-mouth disease virus O isolate o3venezuela iso15, complete
            genome
          Length = 8169

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 36   aacatcaaacacttactc 53
            ||||||||||||||||||
Sbjct: 1371 aacatcaaacacttactc 1388



 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 10   aacatcaaacacttactc 27
            ||||||||||||||||||
Sbjct: 1371 aacatcaaacacttactc 1388

>gb|AY593826.1| Foot-and-mouth disease virus O isolate o2brescia iso17, complete
            genome
          Length = 8166

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 36   aacatcaaacacttactc 53
            ||||||||||||||||||
Sbjct: 1373 aacatcaaacacttactc 1390



 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 10   aacatcaaacacttactc 27
            ||||||||||||||||||
Sbjct: 1373 aacatcaaacacttactc 1390

>gb|AY593822.1| Foot-and-mouth disease virus O isolate o1m11 iso57, complete genome
          Length = 8164

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 36   aacatcaaacacttactc 53
            ||||||||||||||||||
Sbjct: 1373 aacatcaaacacttactc 1390



 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 10   aacatcaaacacttactc 27
            ||||||||||||||||||
Sbjct: 1373 aacatcaaacacttactc 1390

>gb|AY593760.1| Foot-and-mouth disease virus A isolate a20ussr iso10, complete genome
          Length = 8152

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 36   aacatcaaacacttactc 53
            ||||||||||||||||||
Sbjct: 1365 aacatcaaacacttactc 1382



 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 10   aacatcaaacacttactc 27
            ||||||||||||||||||
Sbjct: 1365 aacatcaaacacttactc 1382

>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 25      ctcagggtggaaacatca 42
               ||||||||||||||||||
Sbjct: 2624756 ctcagggtggaaacatca 2624739

>gb|AC004893.1|AC004893 Homo sapiens PAC clone RP4-808A1 from 7q21.1-q31.1, complete sequence
          Length = 103738

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 26    tcagggtggaaacatcaaacac 47
             |||||||||||||| |||||||
Sbjct: 15699 tcagggtggaaacaacaaacac 15678

>gb|J02836.1|MUSGUSB Mouse beta-glucuronidase gene, complete cds
          Length = 16449

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    cagggtggaaacatcaaa 44
             ||||||||||||||||||
Sbjct: 12119 cagggtggaaacatcaaa 12102


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 487,078
Number of Sequences: 3902068
Number of extensions: 487078
Number of successful extensions: 33652
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33603
Number of HSP's gapped (non-prelim): 47
length of query: 59
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 38
effective length of database: 17,151,101,840
effective search space: 651741869920
effective search space used: 651741869920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)