ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110228.1| Zea mays CL32412_1 mRNA sequence 74 3e-10
2ref|NM_194553.1| Oryza sativa (japonica cultivar-group) putative... 68 2e-08
3gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
4gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica culti... 68 2e-08
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
6dbj|AK104730.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
7dbj|AK104633.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
8dbj|AK061462.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
9tpe|BN000654.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 68 2e-08
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
11gb|AY106507.1| Zea mays PCO076057 mRNA sequence 58 2e-05
12ref|NM_120756.2| Arabidopsis thaliana peroxidase AT5G06730 mRNA,... 52 0.001
13gb|AY519360.1| Arabidopsis thaliana peroxidase ATP29a gene, comp... 52 0.001
14emb|Y11794.1|ATP29A A.thaliana mRNA for peroxidase ATP29a, partial 52 0.001
15gb|BT008584.1| Arabidopsis thaliana clone U51349 putative peroxi... 52 0.001
16emb|BX831603.1|CNS0A10N Arabidopsis thaliana Full-length cDNA Co... 52 0.001
17gb|AY088509.1| Arabidopsis thaliana clone 7360 mRNA, complete se... 52 0.001
18dbj|AP002032.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 52 0.001
19dbj|AK118827.1| Arabidopsis thaliana At5g06730 mRNA for putative... 52 0.001
20ref|NM_194528.1| Oryza sativa (japonica cultivar-group) putative... 50 0.005
21gb|AC037197.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
22tpe|BN000653.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 50 0.005
23dbj|AP006408.1| Lotus japonicus genomic DNA, chromosome 4, clone... 48 0.020
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.31
25dbj|AK042057.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 44 0.31
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.31
27gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare str... 44 0.31
28emb|BX470219.6| Zebrafish DNA sequence from clone DKEYP-104C8 in... 44 0.31
29dbj|AK104936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.31
30dbj|AK068353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.31
31tpe|BN000568.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 44 0.31
32gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cance... 44 0.31
33emb|AL935140.6| Zebrafish DNA sequence from clone DKEYP-122E7 in... 44 0.31
34gb|AC145968.3| Pan troglodytes BAC clone RP43-12H15 from 7, comp... 42 1.2
35gb|AC092021.4| Homo sapiens BAC clone RP11-420H12 from 7, comple... 42 1.2
36gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete se... 42 1.2
37emb|AL109742.12|HSJ542O18 Human DNA sequence from clone RP4-542O... 42 1.2
38gb|AC154225.2| Mus musculus BAC clone RP24-352F3 from chromosome... 42 1.2
39emb|AL928671.6| Zebrafish DNA sequence from clone CH211-39M14, c... 42 1.2
40gb|AY857760.1| Triticum monococcum peroxidase 6 (POX6) mRNA, com... 40 4.9
41gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 4.9
42gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 4.9
43gb|AC008308.9| Drosophila melanogaster clone BACR10M16, complete... 40 4.9
44gb|AY521529.1| Brassica napus acid isoperoxidase (podA) mRNA, pa... 40 4.9
45gb|AY227666.1| Lycopersicon esculentum myo inositol monophosphat... 40 4.9
46emb|CR932959.2| Medicago truncatula chromosome 5 clone mte1-55f1... 40 4.9
47gb|AC099681.4| Homo sapiens BAC clone RP11-310H4 from 7, complet... 40 4.9
48gb|AC164406.5| Mus musculus chromosome 3, clone RP24-391L20, com... 40 4.9
49gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete se... 40 4.9
50emb|AL607130.8| Human DNA sequence from clone RP11-80C17 on chro... 40 4.9
51emb|AL158840.14| Human DNA sequence from clone RP11-181B18 on ch... 40 4.9
52emb|AL158837.14| Human DNA sequence from clone RP11-102C16 on ch... 40 4.9
53emb|AL136359.13| Human DNA sequence from clone RP11-24H2 on chro... 40 4.9
54emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome... 40 4.9
55emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 4.9
56emb|BX072578.10| Zebrafish DNA sequence from clone CH211-286A10 ... 40 4.9
57gb|AC073173.7| Homo sapiens chromosome 10 clone RP11-183D3, comp... 40 4.9
58gb|AC087369.5| Homo sapiens chromosome 8, clone RP11-728L1, comp... 40 4.9
59gb|AF479623.1| Ficus carica peroxidase mRNA, complete cds 40 4.9
60gb|U36763.1|MBU36763 Mycobacterium bovis fatty acid synthase gen... 40 4.9
61gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 4.9
62gb|AC018683.4|AC018683 Homo sapiens BAC clone RP11-423P14 from 4... 40 4.9
63gb|AC009344.8|AC009344 Drosophila melanogaster, chromosome 3R, r... 40 4.9
64dbj|AB178953.2| Nicotiana tabacum NtPOX1 mRNA for peroxidase, co... 40 4.9
65gb|AE003733.3| Drosophila melanogaster chromosome 3R, section 71... 40 4.9
66gb|AC144762.3| Mus musculus BAC clone RP24-95D6 from 3, complete... 40 4.9
67gb|U16727.1|MTU16727 Medicago truncatula peroxidase precursor (r... 40 4.9
68emb|AL772378.8| Mouse DNA sequence from clone RP23-106C4 on chro... 40 4.9
69emb|AJ421480.1| Mus musculus X-inactivation center region; segme... 40 4.9 
>gb|AY110228.1| Zea mays CL32412_1 mRNA sequence
          Length = 1199

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                       
Query: 224 tccgtgaccggcctaatgttccccatcttgatcatagaattcgcgaagctactgaagaag 283
           ||||||| |||| | ||||||||||| |||||||| || | |||||||||   |||||||
Sbjct: 260 tccgtgagcggcttgatgttccccatgttgatcatggactgcgcgaagctcgcgaagaag 319

                                                    
Query: 284 gcgtcctggctgcccgcgaacctgtcgacgatcggcgccgt 324
            |||| |||||| ||||||||  ||||||||| ||||||||
Sbjct: 320 tcgtcttggctggccgcgaactggtcgacgatgggcgccgt 360
to top
>ref|NM_194553.1| Oryza sativa (japonica cultivar-group) putative peroxidase
           (OSJNBa0015O22.19), mRNA
          Length = 1011

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                       
Query: 245 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 304
           ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 944 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 885

                                     
Query: 305 ctgtcgacgatcggcgccgtcgtccc 330
           | ||||||||| ||||||||||||||
Sbjct: 884 cggtcgacgatgggcgccgtcgtccc 859
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                          
Query: 245    cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 304
              ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 635077 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 635136

                                        
Query: 305    ctgtcgacgatcggcgccgtcgtccc 330
              | ||||||||| ||||||||||||||
Sbjct: 635137 cggtcgacgatgggcgccgtcgtccc 635162



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 239    atgttccccatcttgatcatagaattcgcgaagctactgaagaag 283
              |||||||||||||||||||| ||   ||||||||| |||||||||
Sbjct: 461759 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 461803
to top
>gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar
              Nipponbare Clone OSJNBa0015O22 From Chromosome 10, complete
              sequence
          Length = 189349

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                          
Query: 245    cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 304
              ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 102685 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 102744

                                        
Query: 305    ctgtcgacgatcggcgccgtcgtccc 330
              | ||||||||| ||||||||||||||
Sbjct: 102745 cggtcgacgatgggcgccgtcgtccc 102770
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                          
Query: 245    cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 304
              ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 635077 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 635136

                                        
Query: 305    ctgtcgacgatcggcgccgtcgtccc 330
              | ||||||||| ||||||||||||||
Sbjct: 635137 cggtcgacgatgggcgccgtcgtccc 635162



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 239    atgttccccatcttgatcatagaattcgcgaagctactgaagaag 283
              |||||||||||||||||||| ||   ||||||||| |||||||||
Sbjct: 461759 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 461803
to top
>dbj|AK104730.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C06, full
            insert sequence
          Length = 1447

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 304
            ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 1003 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 944

                                      
Query: 305  ctgtcgacgatcggcgccgtcgtccc 330
            | ||||||||| ||||||||||||||
Sbjct: 943  cggtcgacgatgggcgccgtcgtccc 918
to top
>dbj|AK104633.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-C08, full
           insert sequence
          Length = 1382

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                       
Query: 245 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 304
           ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 938 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 879

                                     
Query: 305 ctgtcgacgatcggcgccgtcgtccc 330
           | ||||||||| ||||||||||||||
Sbjct: 878 cggtcgacgatgggcgccgtcgtccc 853
to top
>dbj|AK061462.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B11, full
            insert sequence
          Length = 1447

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 304
            ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 1003 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 944

                                      
Query: 305  ctgtcgacgatcggcgccgtcgtccc 330
            | ||||||||| ||||||||||||||
Sbjct: 943  cggtcgacgatgggcgccgtcgtccc 918
to top
>tpe|BN000654.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx125 gene for
            class III peroxidase 125 precursor, exons 1-3
          Length = 2806

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 304
            ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 2739 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 2680

                                      
Query: 305  ctgtcgacgatcggcgccgtcgtccc 330
            | ||||||||| ||||||||||||||
Sbjct: 2679 cggtcgacgatgggcgccgtcgtccc 2654
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                          
Query: 245    cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 304
              ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 635074 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 635133

                                        
Query: 305    ctgtcgacgatcggcgccgtcgtccc 330
              | ||||||||| ||||||||||||||
Sbjct: 635134 cggtcgacgatgggcgccgtcgtccc 635159



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 239    atgttccccatcttgatcatagaattcgcgaagctactgaagaag 283
              |||||||||||||||||||| ||   ||||||||| |||||||||
Sbjct: 461756 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 461800
to top
>gb|AY106507.1| Zea mays PCO076057 mRNA sequence
          Length = 902

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 239 atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctg 295
           ||||| ||||| |||||||| || | ||||||||| |||||||||||| ||||||||
Sbjct: 602 atgttgcccatgttgatcatggactgcgcgaagctgctgaagaaggcggcctggctg 546
to top
>ref|NM_120756.2| Arabidopsis thaliana peroxidase AT5G06730 mRNA, complete cds
          Length = 1392

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 236  ctaatgttccccatcttgatcataga 261
            ||||||||||||||||||||||||||
Sbjct: 1013 ctaatgttccccatcttgatcataga 988
to top
>gb|AY519360.1| Arabidopsis thaliana peroxidase ATP29a gene, complete cds
          Length = 1414

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 236  ctaatgttccccatcttgatcataga 261
            ||||||||||||||||||||||||||
Sbjct: 1287 ctaatgttccccatcttgatcataga 1262
to top
>emb|Y11794.1|ATP29A A.thaliana mRNA for peroxidase ATP29a, partial
          Length = 753

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 236 ctaatgttccccatcttgatcataga 261
           ||||||||||||||||||||||||||
Sbjct: 317 ctaatgttccccatcttgatcataga 292
to top
>gb|BT008584.1| Arabidopsis thaliana clone U51349 putative peroxidase (At5g06730)
           mRNA, complete cds
          Length = 1108

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 236 ctaatgttccccatcttgatcataga 261
           ||||||||||||||||||||||||||
Sbjct: 950 ctaatgttccccatcttgatcataga 925
to top
>emb|BX831603.1|CNS0A10N Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH18ZC08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1372

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 236 ctaatgttccccatcttgatcataga 261
           ||||||||||||||||||||||||||
Sbjct: 996 ctaatgttccccatcttgatcataga 971
to top
>gb|AY088509.1| Arabidopsis thaliana clone 7360 mRNA, complete sequence
          Length = 1351

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 236  ctaatgttccccatcttgatcataga 261
            ||||||||||||||||||||||||||
Sbjct: 1007 ctaatgttccccatcttgatcataga 982
to top
>dbj|AP002032.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPH15
          Length = 71277

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 236   ctaatgttccccatcttgatcataga 261
             ||||||||||||||||||||||||||
Sbjct: 30587 ctaatgttccccatcttgatcataga 30612
to top
>dbj|AK118827.1| Arabidopsis thaliana At5g06730 mRNA for putative peroxidase, complete
            cds, clone: RAFL21-16-B10
          Length = 1296

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 236  ctaatgttccccatcttgatcataga 261
            ||||||||||||||||||||||||||
Sbjct: 1013 ctaatgttccccatcttgatcataga 988
to top
>ref|NM_194528.1| Oryza sativa (japonica cultivar-group) putative copia-type
            polyprotein (OSJNBa0065H03.10), mRNA
          Length = 4053

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 239  atgttccccatcttgatcatagaattcgcgaagctactgaagaag 283
            |||||||||||||||||||| ||   ||||||||| |||||||||
Sbjct: 3986 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 3942
to top
>gb|AC037197.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0065H03, complete sequence
          Length = 141017

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 239   atgttccccatcttgatcatagaattcgcgaagctactgaagaag 283
             |||||||||||||||||||| ||   ||||||||| |||||||||
Sbjct: 65933 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 65977
to top
>tpe|BN000653.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx124 gene for
            class III peroxidase 124 precursor, exons 1-2
          Length = 6789

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 239  atgttccccatcttgatcatagaattcgcgaagctactgaagaag 283
            |||||||||||||||||||| ||   ||||||||| |||||||||
Sbjct: 6722 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 6678
to top
>dbj|AP006408.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT23O19, TM0297b,
             complete sequence
          Length = 43490

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 237   taatgttccccatcttgatcatagaatt 264
             |||| |||||||||||||||||||||||
Sbjct: 22628 taatattccccatcttgatcatagaatt 22601
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 70/86 (81%)
 Strand = Plus / Plus

                                                                           
Query: 239     atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgccc 298
               ||||||||||| |||| ||| ||  | ||||||||  |||||||||| | |||||||   
Sbjct: 7094675 atgttccccatgttgaccatggacctggcgaagctcttgaagaaggccttctggctgatg 7094734

                                         
Query: 299     gcgaacctgtcgacgatcggcgccgt 324
               ||||| |||| |||||||| ||||||
Sbjct: 7094735 gcgaagctgttgacgatcgccgccgt 7094760
to top
>dbj|AK042057.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630054P20 product:unclassifiable, full
            insert sequence
          Length = 1823

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 44   atgaaatgtttacatattggtt 65
            ||||||||||||||||||||||
Sbjct: 1394 atgaaatgtttacatattggtt 1373
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 70/86 (81%)
 Strand = Plus / Plus

                                                                           
Query: 239     atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgccc 298
               ||||||||||| |||| ||| ||  | ||||||||  |||||||||| | |||||||   
Sbjct: 7092570 atgttccccatgttgaccatggacctggcgaagctcttgaagaaggccttctggctgatg 7092629

                                         
Query: 299     gcgaacctgtcgacgatcggcgccgt 324
               ||||| |||| |||||||| ||||||
Sbjct: 7092630 gcgaagctgttgacgatcgccgccgt 7092655
to top
>gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0049C20, from chromosome 3, complete sequence
          Length = 136098

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                         
Query: 239   atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgccc 298
             ||||||||||| |||| ||| ||  | ||||||||  |||||||||| | |||||||   
Sbjct: 99663 atgttccccatgttgaccatggacctggcgaagctcttgaagaaggccttctggctgatg 99604

                                       
Query: 299   gcgaacctgtcgacgatcggcgccgt 324
             ||||| |||| |||||||| ||||||
Sbjct: 99603 gcgaagctgttgacgatcgccgccgt 99578
to top
>emb|BX470219.6| Zebrafish DNA sequence from clone DKEYP-104C8 in linkage group 9,
             complete sequence
          Length = 177086

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 20    ttccacatcagagaacaagcat 41
             ||||||||||||||||||||||
Sbjct: 39159 ttccacatcagagaacaagcat 39138
to top
>dbj|AK104936.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G10, full
            insert sequence
          Length = 1202

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                        
Query: 239  atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgccc 298
            ||||||||||| |||| ||| ||  | ||||||||  |||||||||| | |||||||   
Sbjct: 1049 atgttccccatgttgaccatggacctggcgaagctcttgaagaaggccttctggctgatg 990

                                      
Query: 299  gcgaacctgtcgacgatcggcgccgt 324
            ||||| |||| |||||||| ||||||
Sbjct: 989  gcgaagctgttgacgatcgccgccgt 964
to top
>dbj|AK068353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013142D12, full
            insert sequence
          Length = 1201

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                        
Query: 239  atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgccc 298
            ||||||||||| |||| ||| ||  | ||||||||  |||||||||| | |||||||   
Sbjct: 1050 atgttccccatgttgaccatggacctggcgaagctcttgaagaaggccttctggctgatg 991

                                      
Query: 299  gcgaacctgtcgacgatcggcgccgt 324
            ||||| |||| |||||||| ||||||
Sbjct: 990  gcgaagctgttgacgatcgccgccgt 965
to top
>tpe|BN000568.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx39 gene for
            class III peroxidase 39 precursor, exons 1-4
          Length = 2005

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                        
Query: 239  atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgccc 298
            ||||||||||| |||| ||| ||  | ||||||||  |||||||||| | |||||||   
Sbjct: 1941 atgttccccatgttgaccatggacctggcgaagctcttgaagaaggccttctggctgatg 1882

                                      
Query: 299  gcgaacctgtcgacgatcggcgccgt 324
            ||||| |||| |||||||| ||||||
Sbjct: 1881 gcgaagctgttgacgatcgccgccgt 1856
to top
>gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195726

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 44     atgaaatgtttacatattggtt 65
              ||||||||||||||||||||||
Sbjct: 122482 atgaaatgtttacatattggtt 122503
to top
>emb|AL935140.6| Zebrafish DNA sequence from clone DKEYP-122E7 in linkage group 9,
             complete sequence
          Length = 83763

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 33    aacaagcatgcatgaaatgtttacat 58
             ||||| ||||||||||||||||||||
Sbjct: 76651 aacaaacatgcatgaaatgtttacat 76676
to top
>gb|AC145968.3| Pan troglodytes BAC clone RP43-12H15 from 7, complete sequence
          Length = 192898

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 140    tgtatatgtatatccaaacat 160
              |||||||||||||||||||||
Sbjct: 140214 tgtatatgtatatccaaacat 140234
to top
>gb|AC092021.4| Homo sapiens BAC clone RP11-420H12 from 7, complete sequence
          Length = 37083

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 140   tgtatatgtatatccaaacat 160
             |||||||||||||||||||||
Sbjct: 23371 tgtatatgtatatccaaacat 23351
to top
>gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete sequence
          Length = 117113

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 118   atccaagaccatgccacactt 138
             |||||||||||||||||||||
Sbjct: 58645 atccaagaccatgccacactt 58625
to top
>emb|AL109742.12|HSJ542O18 Human DNA sequence from clone RP4-542O18 on chromosome 1p32.3-34.1
            Contains GSSs, complete sequence
          Length = 101453

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 140  tgtatatgtatatccaaacat 160
            |||||||||||||||||||||
Sbjct: 4204 tgtatatgtatatccaaacat 4224
to top
>gb|AC154225.2| Mus musculus BAC clone RP24-352F3 from chromosome 13, complete sequence
          Length = 157586

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 132    cacacttgtgtatatgtatat 152
              |||||||||||||||||||||
Sbjct: 112981 cacacttgtgtatatgtatat 113001
to top
>emb|AL928671.6| Zebrafish DNA sequence from clone CH211-39M14, complete sequence
          Length = 173481

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 47     aaatgtttacatattggttga 67
              |||||||||||||||||||||
Sbjct: 116711 aaatgtttacatattggttga 116731
to top
>gb|AY857760.1| Triticum monococcum peroxidase 6 (POX6) mRNA, complete cds
          Length = 1308

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 atgttccccatcttgatcat 258
           ||||||||||||||||||||
Sbjct: 971 atgttccccatcttgatcat 952
to top
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     cctgtcgacgatcggcgccg 323
               ||||||||||||||||||||
Sbjct: 2838062 cctgtcgacgatcggcgccg 2838043
to top
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     cggcgccgtcgtccccgccg 335
               ||||||||||||||||||||
Sbjct: 1647365 cggcgccgtcgtccccgccg 1647384
to top
>gb|AC008308.9| Drosophila melanogaster clone BACR10M16, complete sequence
          Length = 196423

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    tgtgtatatgtatatccaaa 157
              ||||||||||||||||||||
Sbjct: 142117 tgtgtatatgtatatccaaa 142136
to top
>gb|AY521529.1| Brassica napus acid isoperoxidase (podA) mRNA, partial cds
          Length = 762

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 227 gtgaccggcctaatgttccccatcttgatcat 258
           |||| ||| |||||||||||||| ||||||||
Sbjct: 749 gtgaacggactaatgttccccattttgatcat 718
to top
>gb|AY227666.1| Lycopersicon esculentum myo inositol monophosphatase isoform 1
            (IMP-1) gene, complete cds
          Length = 5874

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   aatgtttacatattggttga 67
            ||||||||||||||||||||
Sbjct: 2433 aatgtttacatattggttga 2452
to top
>emb|CR932959.2| Medicago truncatula chromosome 5 clone mte1-55f11, COMPLETE SEQUENCE
          Length = 102868

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 239   atgttccccatcttgatcatagaa 262
             ||||||||||||||||||| ||||
Sbjct: 91904 atgttccccatcttgatcaaagaa 91881



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 239   atgttccccatcttgatcatagaa 262
             ||||||||||||||||||| ||||
Sbjct: 65786 atgttccccatcttgatcaaagaa 65763
to top
>gb|AC099681.4| Homo sapiens BAC clone RP11-310H4 from 7, complete sequence
          Length = 97787

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 138   tgtgtatatgtatatccaaacatg 161
             |||||||||||||||| |||||||
Sbjct: 48384 tgtgtatatgtatatcaaaacatg 48361
to top
>gb|AC164406.5| Mus musculus chromosome 3, clone RP24-391L20, complete sequence
          Length = 134552

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     aatacaaatttcagtctatt 21
             ||||||||||||||||||||
Sbjct: 51635 aatacaaatttcagtctatt 51654
to top
>gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete sequence
          Length = 83007

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 239   atgttccccatcttgatcatagaa 262
             ||||||||||||||||||| ||||
Sbjct: 73196 atgttccccatcttgatcaaagaa 73219



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 239   atgttccccatcttgatcatagaa 262
             ||||||||||||||||||| ||||
Sbjct: 47078 atgttccccatcttgatcaaagaa 47101
to top
>emb|AL607130.8| Human DNA sequence from clone RP11-80C17 on chromosome 10, complete
            sequence
          Length = 10455

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 137  ttgtgtatatgtatatccaaacat 160
            ||||||||||||||||| ||||||
Sbjct: 9047 ttgtgtatatgtatatcaaaacat 9024
to top
>emb|AL158840.14| Human DNA sequence from clone RP11-181B18 on chromosome 1 Contains part
             of gene KIAA1365 and a novel gene, complete sequence
          Length = 87665

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 38    gcatgcatgaaatgtttacatatt 61
             ||||||||||||||||| ||||||
Sbjct: 40661 gcatgcatgaaatgtttccatatt 40684
to top
>emb|AL158837.14| Human DNA sequence from clone RP11-102C16 on chromosome 1 Contains the
             gene for a novel protein (FLJ14904, FLJ29032,
             DKFZp434L0217), a novel gene, the GPA33 gene for
             glycoprotein A33 (transmembrane), the gene for novel
             protein (FLJ37495) and three CpG islands, complete
             sequence
          Length = 148849

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    atgcatgaaatgtttacata 59
             ||||||||||||||||||||
Sbjct: 45845 atgcatgaaatgtttacata 45864
to top
>emb|AL136359.13| Human DNA sequence from clone RP11-24H2 on chromosome 13 Contains a
              pseudogene similar to part of protocadherin 8 (PCDH8), a
              novel gene and a CpG island, complete sequence
          Length = 176056

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    aatgttccccatcttgatca 257
              ||||||||||||||||||||
Sbjct: 160417 aatgttccccatcttgatca 160398
to top
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13
          Length = 346051

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   cctgtcgacgatcggcgccg 323
             ||||||||||||||||||||
Sbjct: 69538 cctgtcgacgatcggcgccg 69519
to top
>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14
          Length = 306550

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    cctgtcgacgatcggcgccg 323
              ||||||||||||||||||||
Sbjct: 298371 cctgtcgacgatcggcgccg 298352
to top
>emb|BX072578.10| Zebrafish DNA sequence from clone CH211-286A10 in linkage group 5,
              complete sequence
          Length = 183498

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     gcatgcatgaaatgtttaca 57
              ||||||||||||||||||||
Sbjct: 162877 gcatgcatgaaatgtttaca 162858
to top
>gb|AC073173.7| Homo sapiens chromosome 10 clone RP11-183D3, complete sequence
          Length = 114611

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 137 ttgtgtatatgtatatccaaacat 160
           ||||||||||||||||| ||||||
Sbjct: 592 ttgtgtatatgtatatcaaaacat 569
to top
>gb|AC087369.5| Homo sapiens chromosome 8, clone RP11-728L1, complete sequence
          Length = 193872

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    acacttgtgtatatgtatat 152
              ||||||||||||||||||||
Sbjct: 111695 acacttgtgtatatgtatat 111714
to top
>gb|AF479623.1| Ficus carica peroxidase mRNA, complete cds
          Length = 1267

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 235 cctaatgttccccatcttgatcat 258
           |||||| |||||||||||||||||
Sbjct: 947 cctaatattccccatcttgatcat 924
to top
>gb|U36763.1|MBU36763 Mycobacterium bovis fatty acid synthase gene, complete cds
          Length = 8391

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  cctgtcgacgatcggcgccg 323
            ||||||||||||||||||||
Sbjct: 6399 cctgtcgacgatcggcgccg 6418
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 305     ctgtcgacgatcggcgccgt 324
               ||||||||||||||||||||
Sbjct: 2245582 ctgtcgacgatcggcgccgt 2245563
to top
>gb|AC018683.4|AC018683 Homo sapiens BAC clone RP11-423P14 from 4, complete sequence
          Length = 201907

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 138    tgtgtatatgtatatccaaacatg 161
              ||||||||||||||| ||||||||
Sbjct: 136591 tgtgtatatgtatatacaaacatg 136568
to top
>gb|AC009344.8|AC009344 Drosophila melanogaster, chromosome 3R, region 93A-93B, BAC clone
              BACR20N14, complete sequence
          Length = 173634

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    tgtgtatatgtatatccaaa 157
              ||||||||||||||||||||
Sbjct: 147543 tgtgtatatgtatatccaaa 147524
to top
>dbj|AB178953.2| Nicotiana tabacum NtPOX1 mRNA for peroxidase, complete cds
          Length = 1339

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  gttccccatcttgatcatag 260
            ||||||||||||||||||||
Sbjct: 1054 gttccccatcttgatcatag 1035
to top
>gb|AE003733.3| Drosophila melanogaster chromosome 3R, section 71 of 118 of the complete
              sequence
          Length = 235707

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    tgtgtatatgtatatccaaa 157
              ||||||||||||||||||||
Sbjct: 215832 tgtgtatatgtatatccaaa 215813
to top
>gb|AC144762.3| Mus musculus BAC clone RP24-95D6 from 3, complete sequence
          Length = 198005

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    tgtgtatatgtatatccaaa 157
              ||||||||||||||||||||
Sbjct: 135235 tgtgtatatgtatatccaaa 135216
to top
>gb|U16727.1|MTU16727 Medicago truncatula peroxidase precursor (rip1) gene, complete cds
          Length = 3060

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 239  atgttccccatcttgatcatagaa 262
            ||||||||||||||||||| ||||
Sbjct: 2608 atgttccccatcttgatcaaagaa 2585
to top
>emb|AL772378.8| Mouse DNA sequence from clone RP23-106C4 on chromosome X, complete
             sequence
          Length = 109193

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   ctgacttgagctcctggtca 364
             ||||||||||||||||||||
Sbjct: 81416 ctgacttgagctcctggtca 81435
to top
>emb|AJ421480.1| Mus musculus X-inactivation center region; segment 3/3
          Length = 214384

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   ctgacttgagctcctggtca 364
             ||||||||||||||||||||
Sbjct: 68176 ctgacttgagctcctggtca 68157


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,401,257
Number of Sequences: 3902068
Number of extensions: 3401257
Number of successful extensions: 78384
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78039
Number of HSP's gapped (non-prelim): 345
length of query: 365
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 343
effective length of database: 17,147,199,772
effective search space: 5881489521796
effective search space used: 5881489521796
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top