Clone Name | rbart61a09 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SPP2_NEUCR (Q7SBU7) Pre-mRNA-splicing factor spp-2 | 29 | 3.8 | 2 | TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein... | 29 | 3.8 | 3 | FILA_HUMAN (P20930) Filaggrin | 28 | 5.0 | 4 | TA2R8_PAPHA (Q646G4) Taste receptor type 2 member 8 (T2R8) | 28 | 6.5 | 5 | CCNL1_HUMAN (Q9UK58) Cyclin-L1 (Cyclin-L) | 28 | 8.6 |
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>SPP2_NEUCR (Q7SBU7) Pre-mRNA-splicing factor spp-2| Length = 358 Score = 28.9 bits (63), Expect = 3.8 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = +2 Query: 38 NRSAQKAEHTHGNQKQRATD--TRTRRQSADHSXXXXXXXXXPWCCDE-ETAPPRW 196 NRS + H + + + D +R+RR+S S P E ETAPP+W Sbjct: 114 NRSQDRDRHNNRSSRPSRDDDASRSRRRSTSRSRDRDHKPKDPKDLQEPETAPPKW 169
>TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 955 Score = 28.9 bits (63), Expect = 3.8 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 29 HSLNRSAQKAEHTHGNQKQRATDTRTRRQSADHS 130 HS RSA+K E TH K++ R R +S S Sbjct: 748 HSRERSAEKTEKTHKGSKKQKKHRRARDRSRSSS 781
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/41 (29%), Positives = 17/41 (41%) Frame = +2 Query: 8 HGHPLHKHSLNRSAQKAEHTHGNQKQRATDTRTRRQSADHS 130 H H H+ ++ A H H + + TR QS D S Sbjct: 2487 HSGSHHSHTTSQGRSDASHGHSGSRSASRQTRNDEQSGDGS 2527
>TA2R8_PAPHA (Q646G4) Taste receptor type 2 member 8 (T2R8)| Length = 309 Score = 28.1 bits (61), Expect = 6.5 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -1 Query: 89 LSAFDCRVCALLFARICLVSACVVDVRVI 3 +S DC + L+ +RICL+S VV+ VI Sbjct: 41 ISTIDCILTNLVISRICLISVMVVNGIVI 69
>CCNL1_HUMAN (Q9UK58) Cyclin-L1 (Cyclin-L)| Length = 526 Score = 27.7 bits (60), Expect = 8.6 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +2 Query: 5 SHGHPLHKHSLNRSAQKAEHTHGNQKQRATDTRTRRQSADHS 130 +HG P K R K+ + HG+ K++ + +R++ +S DHS Sbjct: 442 NHGSPHLKAKHTRDDLKSSNRHGH-KRKKSRSRSQSKSRDHS 482 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.118 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,892,745 Number of Sequences: 219361 Number of extensions: 309602 Number of successful extensions: 1067 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1020 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1064 length of database: 80,573,946 effective HSP length: 44 effective length of database: 70,922,062 effective search space used: 1702129488 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)