ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPP2_NEUCR (Q7SBU7) Pre-mRNA-splicing factor spp-2 29 3.8
2TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein... 29 3.8
3FILA_HUMAN (P20930) Filaggrin 28 5.0
4TA2R8_PAPHA (Q646G4) Taste receptor type 2 member 8 (T2R8) 28 6.5
5CCNL1_HUMAN (Q9UK58) Cyclin-L1 (Cyclin-L) 28 8.6

>SPP2_NEUCR (Q7SBU7) Pre-mRNA-splicing factor spp-2|
          Length = 358

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +2

Query: 38  NRSAQKAEHTHGNQKQRATD--TRTRRQSADHSXXXXXXXXXPWCCDE-ETAPPRW 196
           NRS  +  H + + +    D  +R+RR+S   S         P    E ETAPP+W
Sbjct: 114 NRSQDRDRHNNRSSRPSRDDDASRSRRRSTSRSRDRDHKPKDPKDLQEPETAPPKW 169



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>TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein 3 (Thyroid|
           hormone receptor-associated protein complex 150 kDa
           component) (Trap150)
          Length = 955

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 29  HSLNRSAQKAEHTHGNQKQRATDTRTRRQSADHS 130
           HS  RSA+K E TH   K++    R R +S   S
Sbjct: 748 HSRERSAEKTEKTHKGSKKQKKHRRARDRSRSSS 781



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>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 8    HGHPLHKHSLNRSAQKAEHTHGNQKQRATDTRTRRQSADHS 130
            H    H H+ ++    A H H   +  +  TR   QS D S
Sbjct: 2487 HSGSHHSHTTSQGRSDASHGHSGSRSASRQTRNDEQSGDGS 2527



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>TA2R8_PAPHA (Q646G4) Taste receptor type 2 member 8 (T2R8)|
          Length = 309

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 89  LSAFDCRVCALLFARICLVSACVVDVRVI 3
           +S  DC +  L+ +RICL+S  VV+  VI
Sbjct: 41  ISTIDCILTNLVISRICLISVMVVNGIVI 69



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>CCNL1_HUMAN (Q9UK58) Cyclin-L1 (Cyclin-L)|
          Length = 526

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 5   SHGHPLHKHSLNRSAQKAEHTHGNQKQRATDTRTRRQSADHS 130
           +HG P  K    R   K+ + HG+ K++ + +R++ +S DHS
Sbjct: 442 NHGSPHLKAKHTRDDLKSSNRHGH-KRKKSRSRSQSKSRDHS 482


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.118    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,892,745
Number of Sequences: 219361
Number of extensions: 309602
Number of successful extensions: 1067
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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