ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart61a08 |
|---|---|
| Clone Library Name | barley_pub |
>ACCA_NEIMB (Q9JRV8) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%) Frame = +2 Query: 209 GVYTNS-QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 352 G Y N Q +TYS + E C + + ++LGI+ RLQ ++D V+ EP Sbjct: 211 GDYVNMLQYSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQKLDLVDTVIKEP 268
>ACCA_NEIMA (Q9JUF0) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%) Frame = +2 Query: 209 GVYTNS-QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 352 G Y N Q +TYS + E C + + ++LGI+ RLQ ++D V+ EP Sbjct: 211 GDYVNMLQYSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQKLDLVDTVIKEP 268
>ACCA_NEIG1 (Q5F8F5) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%) Frame = +2 Query: 209 GVYTNS-QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 352 G Y N Q +TYS + E C + + ++LGI+ RLQ ++D V+ EP Sbjct: 211 GDYVNMLQYSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQKLDLVDTVIKEP 268
>ACCA_HAEI8 (Q4QND7) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 315 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 9/51 (17%) Frame = +2 Query: 227 QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 352 Q +TYS + E C + ST +G++ SRL+ ++D+++ EP Sbjct: 217 QYSTYSVISPEGCASILWKSAEKASTAAEVMGLTASRLKELNLIDSIMQEP 267
>SCE3_YEAST (P03877) Intron-encoded DNA endonuclease aI3 precursor (DNA| endonuclease I-SceIII) [Contains: Truncated, nonfunctional cytochrome oxidase 1; DNA endonuclease aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)] Length = 403 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 63 LQLRNYLCNSRNCSKVHKLI 4 L+L NYLCN C KV+K I Sbjct: 137 LELANYLCNLTKCGKVYKKI 156
>ACCA_HAEIN (P43872) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 315 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 9/51 (17%) Frame = +2 Query: 227 QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 352 Q +TYS + E C + ST +G++ SRL+ ++D+++ EP Sbjct: 217 QYSTYSVISPEGCASILWKSAEKASTAAEVMGLTASRLKELNLIDSIVQEP 267
>ACCA_AZOSE (Q5P2J0) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 322 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 9/51 (17%) Frame = +2 Query: 227 QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 352 Q ATYS + E C + S ++GI+ +RL++ ++D V++EP Sbjct: 218 QYATYSVISPEGCASILWKSAEKASEAAETMGITAARLKSLGLIDRVVNEP 268
>ASSY_RHILO (Q98E81) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 407 Score = 29.3 bits (64), Expect = 2.5 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +1 Query: 190 FLHKKRRGLHQQPAGYLFLLRHRALSSV 273 F+ K RG+++ P G + ++ HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGAILIVAHRAIESI 297
>ASSY_AGRT5 (Q8UC31) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 407 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 190 FLHKKRRGLHQQPAGYLFLLRHRALSSV 273 F+ K RG+++ P G + L HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGTILLAAHRAIESI 297
>ASSY_BRUSU (Q8G376) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 190 FLHKKRRGLHQQPAGYLFLLRHRALSSV 273 F+ K RG+++ P G + L HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGTILLAAHRAIESI 297
>ASSY_BRUME (Q8YEK8) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 190 FLHKKRRGLHQQPAGYLFLLRHRALSSV 273 F+ K RG+++ P G + L HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGTILLAAHRAIESI 297
>ASSY_RHIME (Q92L73) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 405 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 190 FLHKKRRGLHQQPAGYLFLLRHRALSSV 273 F+ K RG+++ P G + L HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGTILLAAHRAIESI 297
>ASSY_CAUCR (Q9ABU1) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 408 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +1 Query: 190 FLHKKRRGLHQQPAGYLFLLRHRALSSV 273 F+ K RG+++ P G + L HR + S+ Sbjct: 271 FVGMKSRGVYETPGGTILLAAHRGIESI 298
>ASSY_CAMJR (Q5HVA9) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 190 FLHKKRRGLHQQPAGYLFLLRHRALSSV 273 ++ K RG ++ P G + L HRAL S+ Sbjct: 269 YVGMKSRGCYETPGGTILLKAHRALESI 296
>ASSY_CAMJE (Q9PHK7) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 190 FLHKKRRGLHQQPAGYLFLLRHRALSSV 273 ++ K RG ++ P G + L HRAL S+ Sbjct: 269 YVGMKSRGCYETPGGTILLKAHRALESI 296
>ANR50_HUMAN (Q9ULJ7) Ankyrin repeat domain-containing protein 50| Length = 1375 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = +2 Query: 164 LLPLHQELVFFIKKGGVYTNSQQATYSCYAIEHCQVSTTVRSL 292 L+P QE++ + K G + NS+ SC + + ++R+L Sbjct: 435 LIPKEQEVLQLLVKAGAHVNSEDDRTSCIVRQALEREDSIRTL 477
>EMR1_MOUSE (Q61549) EGF-like module-containing mucin-like hormone| receptor-like 1 precursor (Cell surface glycoprotein EMR1) (EMR1 hormone receptor) (Cell surface glycoprotein F4/80) Length = 931 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -2 Query: 65 LCSYVIICVTVGIVPKYIN 9 LC+ V C+T+GI PKY N Sbjct: 130 LCADVDECLTIGICPKYSN 148
>ASSY_HELHP (Q7VGU9) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 404 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +1 Query: 190 FLHKKRRGLHQQPAGYLFLLRHRALSSV 273 ++ K RG ++ P G ++L HRA+ S+ Sbjct: 268 YVGMKSRGCYETPGGTIYLKAHRAIESL 295
>ACCA_PSEPK (Q88MG4) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 315 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 9/51 (17%) Frame = +2 Query: 227 QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 352 Q +TYS + E C + + ++GI+ RL++ I+D V+ EP Sbjct: 218 QYSTYSVISPEGCASILWKTADKAADAAEAMGITAERLKSLNIVDKVIQEP 268
>ASSY_AZOSE (Q5P0Z7) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 409 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 190 FLHKKRRGLHQQPAGYLFLLRHRALSSV 273 ++ K RG ++ P G + L HRA+ SV Sbjct: 270 YVGMKSRGCYETPGGTILLRAHRAIESV 297 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,816,817 Number of Sequences: 219361 Number of extensions: 721196 Number of successful extensions: 1553 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1545 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1553 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
