ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009641.1| Triticum aestivum clone wre1n.pk191.c6:fis, full ... 521 e-145
2ref|XM_483316.1| Oryza sativa (japonica cultivar-group), mRNA 113 4e-22
3dbj|D64036.1|RICSS22414 Oryza sativa mRNA for protein cdc2 kinas... 113 4e-22
4dbj|AK059682.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 4e-22
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
6dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
7gb|AY106029.1| Zea mays PCO078926 mRNA sequence 70 5e-09
8gb|AC007369.2| Arabidopsis thaliana chromosome I BAC F9H16 genom... 68 2e-08
9ref|NM_101946.1| Arabidopsis thaliana CDKB2;2 (CYCLIN-DEPENDENT ... 64 3e-07
10gb|BT024780.1| Arabidopsis thaliana At1g20930 mRNA, complete cds 64 3e-07
11emb|BX813510.1|CNS0ADKU Arabidopsis thaliana Full-length cDNA Co... 64 3e-07
12gb|AY084441.1| Arabidopsis thaliana clone 108339 mRNA, complete ... 64 3e-07
13gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14... 60 5e-06
14ref|NM_106304.2| Arabidopsis thaliana CDKB2;1; kinase AT1G76540 ... 56 7e-05
15gb|AY143859.1| Arabidopsis thaliana At1g76540/F14G6_14 mRNA, com... 56 7e-05
16emb|X97317.1|MSCDC2MSF M.sativa mRNA for cdc2 kinase homologue, ... 56 7e-05
17emb|AJ297936.1|ATH297936 Arabidopsis thaliana mRNA for cyclin de... 56 7e-05
18gb|AF389283.1|AF389283 Arabidopsis thaliana At1g76540/F14G6_14 m... 56 7e-05
19gb|AY085000.1| Arabidopsis thaliana clone 1241 mRNA, complete se... 56 7e-05
20dbj|AB047279.1| Arabidopsis thaliana Arath;CDKB2;1 mRNA for cycl... 56 7e-05
21gb|AC144481.6| Medicago truncatula clone mth2-35e10, complete se... 52 0.001
22ref|XM_511002.1| PREDICTED: Pan troglodytes LOC454131 (LOC454131... 46 0.071
23gb|BT019793.1| Synthetic construct Homo sapiens casein kinase 2,... 46 0.071
24gb|BC008812.2| Homo sapiens casein kinase 2, alpha prime polypep... 46 0.071
25ref|NM_001896.2| Homo sapiens casein kinase 2, alpha prime polyp... 46 0.071
26dbj|AK125922.1| Homo sapiens cDNA FLJ43934 fis, clone TESTI4013735 46 0.071
27dbj|AB179095.1| Macaca fascicularis testis cDNA clone: QtsA-1273... 46 0.071
28gb|AY335742.1| Synthetic construct Homo sapiens casein kinase 2,... 46 0.071
29gb|AC009107.11| Homo sapiens chromosome 16 clone RP11-459F6, com... 46 0.071
30gb|AC026771.6| Homo sapiens chromosome 16 clone CTB-134F13, comp... 46 0.071
31gb|AY890815.1| Synthetic construct Homo sapiens clone FLH009443.... 46 0.071
32gb|M55268.1|HUMA1CKII Human casein kinase II alpha' subunit mRNA... 46 0.071
33emb|X97640.1|ASCDC2D Antirrhinum sp mRNA for cyclin-dependent ki... 44 0.28
34gb|AC004585.1|AC004585 Homo sapiens chromosome 17, clone hRPC.10... 42 1.1
35gb|AC122492.3| Mus musculus BAC clone RP24-390N7 from chromosome... 40 4.4
36dbj|AB232919.1| Oryzias latipes hox gene cluster, complete cds, ... 40 4.4
37gb|AC160414.4| Mus musculus 10 BAC RP24-166O23 (Roswell Park Can... 40 4.4
38gb|AC162308.2| Mus musculus BAC clone RP23-109E9 from chromosome... 40 4.4
39emb|AL844891.7| Mouse DNA sequence from clone RP23-350N21 on chr... 40 4.4 
>gb|BT009641.1| Triticum aestivum clone wre1n.pk191.c6:fis, full insert mRNA sequence
          Length = 1222

 Score =  521 bits (263), Expect = e-145
 Identities = 315/331 (95%), Gaps = 1/331 (0%)
 Strand = Plus / Minus

                                                                        
Query: 4    gtttaattatgcatagttccatagccactatccatcacaaccatcagtcagtggtgcaaa 63
            |||||||||||||||  |||| || |||||||||| |||||||||||||| ||| |||||
Sbjct: 1032 gtttaattatgcataactccagagtcactatccattacaaccatcagtcaatggggcaaa 973

                                                                        
Query: 64   -ctaaatggcagctggaataacagaggtaaaaatgcctgtcctggaagcaaaagatatgc 122
             |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 972  actaaatggcagctggaataacagaggtaaagatgcctgccctggaagcaaaagatatgc 913

                                                                        
Query: 123  ttcaggacaagcacaaatcacaagaaatccgcttcttgttagccaccaagacagcttcag 182
            |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 912  ttcaggacaagcacaaatcacaagaaatccgcttcttgctagccacgaagacagcttcag 853

                                                                        
Query: 183  tacagcgccttgtccacatcatcgaagtatgggtgctccatggccttctttgcagagatc 242
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 852  tacagcgccttgtccacatcatcgaagtatgggtgctccatggccttcttcgcagagatc 793

                                                                        
Query: 243  cgctttgccggctcatactgcagcattttctcaagcagatcaataccaacggcatcgaga 302
            ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 792  cgctttgccggctcatactgcagcattttctcaagcagatcgataccatcggcatcgaga 733

                                           
Query: 303  ctgggaattacagaagacagctttgagacgt 333
            || ||||||||||||||||||||||||||||
Sbjct: 732  ctaggaattacagaagacagctttgagacgt 702
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>ref|XM_483316.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1221

 Score =  113 bits (57), Expect = 4e-22
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                        
Query: 177  cttcagtacagcgccttgtccacatcatcgaagtatgggtgctccatggccttctttgca 236
            |||||||| ||| |||||| ||| || | |||||| || ||||||||||||||||| |||
Sbjct: 1033 cttcagtagagctccttgttcacgtcgttgaagtagggatgctccatggccttcttcgca 974

                                                             
Query: 237  gagatccgctttgccggctcatactgcagcattttctcaagcagatcaa 285
            ||||||||||| | |||||| |||||||||||||||||||| |||||||
Sbjct: 973  gagatccgcttcgacggctcgtactgcagcattttctcaagaagatcaa 925
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>dbj|D64036.1|RICSS22414 Oryza sativa mRNA for protein cdc2 kinase, complete cds
          Length = 1167

 Score =  113 bits (57), Expect = 4e-22
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                       
Query: 177 cttcagtacagcgccttgtccacatcatcgaagtatgggtgctccatggccttctttgca 236
           |||||||| ||| |||||| ||| || | |||||| || ||||||||||||||||| |||
Sbjct: 979 cttcagtagagctccttgttcacgtcgttgaagtagggatgctccatggccttcttcgca 920

                                                            
Query: 237 gagatccgctttgccggctcatactgcagcattttctcaagcagatcaa 285
           ||||||||||| | |||||| |||||||||||||||||||| |||||||
Sbjct: 919 gagatccgcttcgacggctcgtactgcagcattttctcaagaagatcaa 871
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>dbj|AK059682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-H09, full
            insert sequence
          Length = 1221

 Score =  113 bits (57), Expect = 4e-22
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                        
Query: 177  cttcagtacagcgccttgtccacatcatcgaagtatgggtgctccatggccttctttgca 236
            |||||||| ||| |||||| ||| || | |||||| || ||||||||||||||||| |||
Sbjct: 1033 cttcagtagagctccttgttcacgtcgttgaagtagggatgctccatggccttcttcgca 974

                                                             
Query: 237  gagatccgctttgccggctcatactgcagcattttctcaagcagatcaa 285
            ||||||||||| | |||||| |||||||||||||||||||| |||||||
Sbjct: 973  gagatccgcttcgacggctcgtactgcagcattttctcaagaagatcaa 925
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                            
Query: 177      cttcagtacagcgccttgtccacatcatcgaagtatgggtgctccatggccttctttgca 236
                |||||||| ||| |||||| ||| || | |||||| || ||||||||||||||||| |||
Sbjct: 25414292 cttcagtagagctccttgttcacgtcgttgaagtagggatgctccatggccttcttcgca 25414233

                                                     
Query: 237      gagatccgctttgccggctcatactgcagcattttct 273
                ||||||||||| | |||||| ||||||||||||||||
Sbjct: 25414232 gagatccgcttcgacggctcgtactgcagcattttct 25414196
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>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0711H09
          Length = 185858

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                         
Query: 177   cttcagtacagcgccttgtccacatcatcgaagtatgggtgctccatggccttctttgca 236
             |||||||| ||| |||||| ||| || | |||||| || ||||||||||||||||| |||
Sbjct: 45608 cttcagtagagctccttgttcacgtcgttgaagtagggatgctccatggccttcttcgca 45549

                                                  
Query: 237   gagatccgctttgccggctcatactgcagcattttct 273
             ||||||||||| | |||||| ||||||||||||||||
Sbjct: 45548 gagatccgcttcgacggctcgtactgcagcattttct 45512
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>gb|AY106029.1| Zea mays PCO078926 mRNA sequence
          Length = 1194

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 88/103 (85%), Gaps = 2/103 (1%)
 Strand = Plus / Minus

                                                                        
Query: 176  gcttcagtacagcgccttgtccacatcatcgaagtatgggtgctccatggccttctttgc 235
            ||||||||||| | ||||||  ||||||| |||||| |||||||||| ||||||||| ||
Sbjct: 1015 gcttcagtacacctccttgttaacatcattgaagtacgggtgctccagggccttcttcgc 956

                                                       
Query: 236  agagatccgctttgccggctcatactgc-agcattttctcaag 277
             |||| ||||||  | |||||||| ||| ||||||||||||||
Sbjct: 955  cgagacccgcttccctggctcata-tgcaagcattttctcaag 914
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>gb|AC007369.2| Arabidopsis thaliana chromosome I BAC F9H16 genomic sequence, complete
             sequence
          Length = 103192

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 200   atcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcata 259
             |||||||||||| || |||||||| || |||||||| ||||| || ||||| ||||| ||
Sbjct: 55096 atcatcgaagtaaggatgctccatagctttctttgctgagattcgttttgctggctcgta 55037

                           
Query: 260   ctgcagcattttct 273
             || |||||||||||
Sbjct: 55036 ctccagcattttct 55023
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>ref|NM_101946.1| Arabidopsis thaliana CDKB2;2 (CYCLIN-DEPENDENT KINASE B2;2); kinase
            AT1G20930 (CDKB2;2) mRNA, complete cds
          Length = 1210

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 200  atcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcata 259
            |||||||||||| || |||||||| || |||||||| ||||| || ||||| ||||| ||
Sbjct: 1006 atcatcgaagtaaggatgctccatagctttctttgctgagattcgttttgctggctcgta 947

                        
Query: 260  ctgcagcatttt 271
            || |||||||||
Sbjct: 946  ctccagcatttt 935
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>gb|BT024780.1| Arabidopsis thaliana At1g20930 mRNA, complete cds
          Length = 948

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 200 atcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcata 259
           |||||||||||| || |||||||| || |||||||| ||||| || ||||| ||||| ||
Sbjct: 924 atcatcgaagtaaggatgctccatagctttctttgctgagattcgttttgctggctcgta 865

                       
Query: 260 ctgcagcatttt 271
           || |||||||||
Sbjct: 864 ctccagcatttt 853
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>emb|BX813510.1|CNS0ADKU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB21ZB02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1115

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 200 atcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcata 259
           |||||||||||| || |||||||| || |||||||| ||||| || ||||| ||||| ||
Sbjct: 959 atcatcgaagtaaggatgctccatagctttctttgctgagattcgttttgctggctcgta 900

                       
Query: 260 ctgcagcatttt 271
           || |||||||||
Sbjct: 899 ctccagcatttt 888
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>gb|AY084441.1| Arabidopsis thaliana clone 108339 mRNA, complete sequence
          Length = 1209

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 200  atcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcata 259
            |||||||||||| || |||||||| || |||||||| ||||| || ||||| ||||| ||
Sbjct: 1006 atcatcgaagtaaggatgctccatagctttctttgctgagattcgttttgctggctcgta 947

                        
Query: 260  ctgcagcatttt 271
            || |||||||||
Sbjct: 946  ctccagcatttt 935
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>gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14G6 genomic sequence, complete
             sequence
          Length = 100806

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                         
Query: 200   atcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcata 259
             |||||| ||||| || |||||||| ||| ||||||| ||||| || || || ||||| ||
Sbjct: 56880 atcatcaaagtaaggatgctccatagccatctttgctgagattcgtttcgctggctcgta 56939

                           
Query: 260   ctgcagcattttct 273
             ||||||||||||||
Sbjct: 56940 ctgcagcattttct 56953
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>ref|NM_106304.2| Arabidopsis thaliana CDKB2;1; kinase AT1G76540 (CDKB2;1) mRNA,
            complete cds
          Length = 1338

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 200  atcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcata 259
            |||||| ||||| || |||||||| ||| ||||||| ||||| || || || ||||| ||
Sbjct: 1088 atcatcaaagtaaggatgctccatagccatctttgctgagattcgtttcgctggctcgta 1029

                        
Query: 260  ctgcagcatttt 271
            ||||||||||||
Sbjct: 1028 ctgcagcatttt 1017
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>gb|AY143859.1| Arabidopsis thaliana At1g76540/F14G6_14 mRNA, complete cds
          Length = 942

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 200 atcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcata 259
           |||||| ||||| || |||||||| ||| ||||||| ||||| || || || ||||| ||
Sbjct: 918 atcatcaaagtaaggatgctccatagccatctttgctgagattcgtttcgctggctcgta 859

                       
Query: 260 ctgcagcatttt 271
           ||||||||||||
Sbjct: 858 ctgcagcatttt 847
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>emb|X97317.1|MSCDC2MSF M.sativa mRNA for cdc2 kinase homologue, cdc2MsF
          Length = 1285

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 191 cttgtccacatcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgc 250
           ||||||||  ||||| ||||| ||||| ||||| || ||||||||||| | |||||| | 
Sbjct: 994 cttgtccaggtcatcaaagtaagggtgttccatagctttctttgcagatagccgcttgga 935

                               
Query: 251 cggctcatactgcagcattt 270
            |||||||| ||||||||||
Sbjct: 934 gggctcatattgcagcattt 915
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>emb|AJ297936.1|ATH297936 Arabidopsis thaliana mRNA for cyclin dependent kinase (CDKB2;1
           gene)
          Length = 1142

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 200 atcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcata 259
           |||||| ||||| || |||||||| ||| ||||||| ||||| || || || ||||| ||
Sbjct: 918 atcatcaaagtaaggatgctccatagccatctttgctgagattcgtttcgctggctcgta 859

                       
Query: 260 ctgcagcatttt 271
           ||||||||||||
Sbjct: 858 ctgcagcatttt 847
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>gb|AF389283.1|AF389283 Arabidopsis thaliana At1g76540/F14G6_14 mRNA, complete cds
          Length = 1153

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 200 atcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcata 259
           |||||| ||||| || |||||||| ||| ||||||| ||||| || || || ||||| ||
Sbjct: 981 atcatcaaagtaaggatgctccatagccatctttgctgagattcgtttcgctggctcgta 922

                       
Query: 260 ctgcagcatttt 271
           ||||||||||||
Sbjct: 921 ctgcagcatttt 910
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>gb|AY085000.1| Arabidopsis thaliana clone 1241 mRNA, complete sequence
          Length = 1296

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 200  atcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcata 259
            |||||| ||||| || |||||||| ||| ||||||| ||||| || || || ||||| ||
Sbjct: 1088 atcatcaaagtaaggatgctccatagccatctttgctgagattcgtttcgctggctcgta 1029

                        
Query: 260  ctgcagcatttt 271
            ||||||||||||
Sbjct: 1028 ctgcagcatttt 1017
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>dbj|AB047279.1| Arabidopsis thaliana Arath;CDKB2;1 mRNA for cyclin-dependent kinase
           B2, complete cds
          Length = 942

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 200 atcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcata 259
           |||||| ||||| || |||||||| ||| ||||||| ||||| || || || ||||| ||
Sbjct: 918 atcatcaaagtaaggatgctccatagccatctttgctgagattcgtttcgctggctcgta 859

                       
Query: 260 ctgcagcatttt 271
           ||||||||||||
Sbjct: 858 ctgcagcatttt 847
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>gb|AC144481.6| Medicago truncatula clone mth2-35e10, complete sequence
          Length = 127189

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                         
Query: 201   tcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcatac 260
             ||||| ||||| ||||| ||||| || ||||||||||| | |||||| |  || ||||||
Sbjct: 70755 tcatcaaagtaagggtgttccatagctttctttgcagatagccgcttggaaggttcatac 70814

                       
Query: 261   tgcagcattt 270
             ||||||||||
Sbjct: 70815 tgcagcattt 70824
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>ref|XM_511002.1| PREDICTED: Pan troglodytes LOC454131 (LOC454131), mRNA
          Length = 1418

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 206  gaagtatgggtgctccatggcct 228
            |||||||||||||||||||||||
Sbjct: 1086 gaagtatgggtgctccatggcct 1064
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>gb|BT019793.1| Synthetic construct Homo sapiens casein kinase 2, alpha prime
           polypeptide mRNA, partial cds
          Length = 1053

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 206 gaagtatgggtgctccatggcct 228
           |||||||||||||||||||||||
Sbjct: 975 gaagtatgggtgctccatggcct 953
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>gb|BC008812.2| Homo sapiens casein kinase 2, alpha prime polypeptide, mRNA (cDNA
           clone MGC:10397 IMAGE:3951914), complete cds
          Length = 1548

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 206 gaagtatgggtgctccatggcct 228
           |||||||||||||||||||||||
Sbjct: 991 gaagtatgggtgctccatggcct 969
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>ref|NM_001896.2| Homo sapiens casein kinase 2, alpha prime polypeptide (CSNK2A2), mRNA
          Length = 1674

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 206  gaagtatgggtgctccatggcct 228
            |||||||||||||||||||||||
Sbjct: 1117 gaagtatgggtgctccatggcct 1095
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>dbj|AK125922.1| Homo sapiens cDNA FLJ43934 fis, clone TESTI4013735
          Length = 4348

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 206 gaagtatgggtgctccatggcct 228
           |||||||||||||||||||||||
Sbjct: 81  gaagtatgggtgctccatggcct 59
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>dbj|AB179095.1| Macaca fascicularis testis cDNA clone: QtsA-12731, similar to human
            casein kinase 2, alpha prime polypeptide (CSNK2A2), mRNA,
            RefSeq: NM_001896.2
          Length = 1579

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 206  gaagtatgggtgctccatggcct 228
            |||||||||||||||||||||||
Sbjct: 1026 gaagtatgggtgctccatggcct 1004
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>gb|AY335742.1| Synthetic construct Homo sapiens casein kinase 2, alpha prime
           polypeptide (CSNK2A2) mRNA, partial cds
          Length = 1053

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 206 gaagtatgggtgctccatggcct 228
           |||||||||||||||||||||||
Sbjct: 975 gaagtatgggtgctccatggcct 953
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>gb|AC009107.11| Homo sapiens chromosome 16 clone RP11-459F6, complete sequence
          Length = 208220

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 206   gaagtatgggtgctccatggcct 228
             |||||||||||||||||||||||
Sbjct: 37138 gaagtatgggtgctccatggcct 37160
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>gb|AC026771.6| Homo sapiens chromosome 16 clone CTB-134F13, complete sequence
          Length = 69808

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 206   gaagtatgggtgctccatggcct 228
             |||||||||||||||||||||||
Sbjct: 10428 gaagtatgggtgctccatggcct 10406
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>gb|AY890815.1| Synthetic construct Homo sapiens clone FLH009443.01L casein kinase
           2 alpha prime polypeptide (CSNK2A2) mRNA, partial cds
          Length = 1053

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 206 gaagtatgggtgctccatggcct 228
           |||||||||||||||||||||||
Sbjct: 975 gaagtatgggtgctccatggcct 953
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>gb|M55268.1|HUMA1CKII Human casein kinase II alpha' subunit mRNA, complete cds
          Length = 1677

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 206  gaagtatgggtgctccatggcct 228
            |||||||||||||||||||||||
Sbjct: 1138 gaagtatgggtgctccatggcct 1116
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>emb|X97640.1|ASCDC2D Antirrhinum sp mRNA for cyclin-dependent kinase, cdc2d
          Length = 1207

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                       
Query: 201 tcatcgaagtatgggtgctccatggccttctttgcagagatccgctttgccggctcatac 260
           ||||||||||| || || |||||||| |||||||| || |||| | |||  || ||||| 
Sbjct: 968 tcatcgaagtaaggatgttccatggctttctttgctgaaatcctccttgatggttcataa 909

                     
Query: 261 tgcagcattt 270
           ||||||||||
Sbjct: 908 tgcagcattt 899
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>gb|AC004585.1|AC004585 Homo sapiens chromosome 17, clone hRPC.1028_K_7, complete sequence
          Length = 133801

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 220   ccatggccttctttgcagaga 240
             |||||||||||||||||||||
Sbjct: 45028 ccatggccttctttgcagaga 45008
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>gb|AC122492.3| Mus musculus BAC clone RP24-390N7 from chromosome 5, complete sequence
          Length = 196275

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 9      attatgcatagttccatagccact 32
              |||||||||| |||||||||||||
Sbjct: 104127 attatgcataattccatagccact 104150
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>dbj|AB232919.1| Oryzias latipes hox gene cluster, complete cds, contains hoxAb
          Length = 240727

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    caagacagcttcagtacagc 188
              ||||||||||||||||||||
Sbjct: 127180 caagacagcttcagtacagc 127161
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>gb|AC160414.4| Mus musculus 10 BAC RP24-166O23 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 150002

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   aagcacaaatcacaagaaat 150
             ||||||||||||||||||||
Sbjct: 49248 aagcacaaatcacaagaaat 49267
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>gb|AC162308.2| Mus musculus BAC clone RP23-109E9 from chromosome 5, complete sequence
          Length = 218501

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     attatgcatagttccatagccact 32
             |||||||||| |||||||||||||
Sbjct: 19180 attatgcataattccatagccact 19203
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>emb|AL844891.7| Mouse DNA sequence from clone RP23-350N21 on chromosome 2, complete
             sequence
          Length = 138602

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tcctggaagcaaaagatatg 121
             ||||||||||||||||||||
Sbjct: 86046 tcctggaagcaaaagatatg 86065


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,354,911
Number of Sequences: 3902068
Number of extensions: 3354911
Number of successful extensions: 63088
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63030
Number of HSP's gapped (non-prelim): 56
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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