ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL669859.5| Mouse DNA sequence from clone RP23-167D6 on chro... 44 0.33
2gb|AC010846.13| Drosophila melanogaster clone BACR13G13, complet... 42 1.3
3gb|AC133123.3| Homo sapiens 3 BAC RP11-441E2 (Roswell Park Cance... 42 1.3
4gb|AC140112.3| Homo sapiens BAC clone RP11-1278I4 from UL, compl... 42 1.3
5emb|AL359181.28| Human DNA sequence from clone RP11-392N11 on ch... 42 1.3
6gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, comp... 42 1.3
7gb|AC008813.6| Homo sapiens chromosome 19 clone CTD-2102P23, com... 42 1.3
8gb|AC148939.8| Pan troglodytes BAC clone CH251-51M11 from chromo... 42 1.3
9dbj|AK131448.1| Homo sapiens cDNA FLJ16592 fis, clone TESTI4001984 42 1.3
10gb|AC114954.2| Homo sapiens chromosome 5 clone RP11-103A10, comp... 42 1.3
11ref|NM_167518.1| Drosophila melanogaster Traf3 CG4394-RB, transc... 42 1.3
12ref|NM_167517.1| Drosophila melanogaster Traf3 CG4394-RA, transc... 42 1.3
13ref|NM_132898.2| Drosophila melanogaster Traf3 CG4394-RC, transc... 42 1.3
14gb|AY052057.1| Drosophila melanogaster LP08566 full length cDNA 42 1.3
15gb|AC010920.11|AC010920 Drosophila melanogaster, chromosome X, r... 42 1.3
16gb|AC150749.3| Pan troglodytes BAC clone CH251-553P23 from chrom... 42 1.3
17emb|BX546492.4| Human DNA sequence from clone RP11-441E2 on chro... 42 1.3
18dbj|AB016870.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.3
19gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 ... 42 1.3
20gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome... 40 5.2
21gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, co... 40 5.2
22gb|AY569234.1| Adelotettix gigas 16S ribosomal RNA gene, partial... 40 5.2
23gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, com... 40 5.2
24gb|AF203743.1| Eonycteris spelaea 16S ribosomal RNA gene, comple... 40 5.2
25emb|AL929495.21| Zebrafish DNA sequence from clone CH211-136M16 ... 40 5.2
26gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, co... 40 5.2
27gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, comp... 40 5.2
28emb|Y11658.1|ECVHL88 Equus caballus DNA for CA microsatellite, l... 40 5.2
29emb|AL713979.6| Mouse DNA sequence from clone RP23-434O7 on chro... 40 5.2

>emb|AL669859.5| Mouse DNA sequence from clone RP23-167D6 on chromosome 11, complete
             sequence
          Length = 155196

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 60    agttttatattagggtttaatg 81
             ||||||||||||||||||||||
Sbjct: 54624 agttttatattagggtttaatg 54603



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>gb|AC010846.13| Drosophila melanogaster clone BACR13G13, complete sequence
          Length = 192540

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 36     tccgtatgttgcccacatcgg 56
              |||||||||||||||||||||
Sbjct: 159801 tccgtatgttgcccacatcgg 159781



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>gb|AC133123.3| Homo sapiens 3 BAC RP11-441E2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114080

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 125   acaaaaatctgggaaataggtaaaa 149
             |||||||| ||||||||||||||||
Sbjct: 59281 acaaaaatttgggaaataggtaaaa 59305



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>gb|AC140112.3| Homo sapiens BAC clone RP11-1278I4 from UL, complete sequence
          Length = 216658

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 125   acaaaaatctgggaaataggtaaaa 149
             |||||||| ||||||||||||||||
Sbjct: 33363 acaaaaatttgggaaataggtaaaa 33339



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>emb|AL359181.28| Human DNA sequence from clone RP11-392N11 on chromosome 9 Contains the 3'
              end of the PHF2 gene for PHD finger protein 2 (GRC5,
              KIAA0662), complete sequence
          Length = 165415

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 125    acaaaaatctgggaaataggtaaaa 149
              |||||||| ||||||||||||||||
Sbjct: 137509 acaaaaatttgggaaataggtaaaa 137485



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>gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, complete sequence
          Length = 191144

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 125   acaaaaatctgggaaataggtaaaa 149
             |||||||| ||||||||||||||||
Sbjct: 28926 acaaaaatttgggaaataggtaaaa 28950



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>gb|AC008813.6| Homo sapiens chromosome 19 clone CTD-2102P23, complete sequence
          Length = 162914

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 125    acaaaaatctgggaaataggtaaaa 149
              |||||||| ||||||||||||||||
Sbjct: 110749 acaaaaatttgggaaataggtaaaa 110773



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>gb|AC148939.8| Pan troglodytes BAC clone CH251-51M11 from chromosome 7, complete
             sequence
          Length = 183313

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 125   acaaaaatctgggaaataggtaaaa 149
             |||||||| ||||||||||||||||
Sbjct: 70525 acaaaaatttgggaaataggtaaaa 70549



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>dbj|AK131448.1| Homo sapiens cDNA FLJ16592 fis, clone TESTI4001984
          Length = 3944

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 125  acaaaaatctgggaaataggtaaaa 149
            |||||||| ||||||||||||||||
Sbjct: 2648 acaaaaatttgggaaataggtaaaa 2672



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>gb|AC114954.2| Homo sapiens chromosome 5 clone RP11-103A10, complete sequence
          Length = 157980

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 125    acaaaaatctgggaaataggtaaaa 149
              |||||||| ||||||||||||||||
Sbjct: 105144 acaaaaatttgggaaataggtaaaa 105120



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>ref|NM_167518.1| Drosophila melanogaster Traf3 CG4394-RB, transcript variant B
           (Traf3), mRNA
          Length = 1809

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tccgtatgttgcccacatcgg 56
           |||||||||||||||||||||
Sbjct: 340 tccgtatgttgcccacatcgg 320



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>ref|NM_167517.1| Drosophila melanogaster Traf3 CG4394-RA, transcript variant A
           (Traf3), mRNA
          Length = 2249

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tccgtatgttgcccacatcgg 56
           |||||||||||||||||||||
Sbjct: 780 tccgtatgttgcccacatcgg 760



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>ref|NM_132898.2| Drosophila melanogaster Traf3 CG4394-RC, transcript variant C
           (Traf3), mRNA
          Length = 2337

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tccgtatgttgcccacatcgg 56
           |||||||||||||||||||||
Sbjct: 868 tccgtatgttgcccacatcgg 848



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>gb|AY052057.1| Drosophila melanogaster LP08566 full length cDNA
          Length = 2352

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tccgtatgttgcccacatcgg 56
           |||||||||||||||||||||
Sbjct: 868 tccgtatgttgcccacatcgg 848



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>gb|AC010920.11|AC010920 Drosophila melanogaster, chromosome X, region 14C-14D, BAC clone
             BACR47D09, complete sequence
          Length = 166935

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    tccgtatgttgcccacatcgg 56
             |||||||||||||||||||||
Sbjct: 63847 tccgtatgttgcccacatcgg 63827



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>gb|AC150749.3| Pan troglodytes BAC clone CH251-553P23 from chromosome 7, complete
              sequence
          Length = 237211

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 125    acaaaaatctgggaaataggtaaaa 149
              |||||||| ||||||||||||||||
Sbjct: 105323 acaaaaatttgggaaataggtaaaa 105299



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>emb|BX546492.4| Human DNA sequence from clone RP11-441E2 on chromosome 22, complete
             sequence
          Length = 165333

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 125   acaaaaatctgggaaataggtaaaa 149
             |||||||| ||||||||||||||||
Sbjct: 59282 acaaaaatttgggaaataggtaaaa 59306



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>dbj|AB016870.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15I22
          Length = 59648

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 118  tacacacacaaaaatctggga 138
            |||||||||||||||||||||
Sbjct: 6042 tacacacacaaaaatctggga 6022



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>gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 of 74 of the complete
             sequence
          Length = 304712

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    tccgtatgttgcccacatcgg 56
             |||||||||||||||||||||
Sbjct: 83129 tccgtatgttgcccacatcgg 83109



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>gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome 9, complete sequence
          Length = 205289

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   acattttacatgaggagtac 120
             ||||||||||||||||||||
Sbjct: 86957 acattttacatgaggagtac 86976



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>gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, complete sequence
          Length = 210819

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 126   caaaaatctgggaaataggtaaaa 149
             ||||||||||||||| ||||||||
Sbjct: 28379 caaaaatctgggaaagaggtaaaa 28402



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>gb|AY569234.1| Adelotettix gigas 16S ribosomal RNA gene, partial sequence;
           mitochondrial
          Length = 509

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 62  ttttatattagggtttaatg 81
           ||||||||||||||||||||
Sbjct: 257 ttttatattagggtttaatg 276



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>gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, complete sequence
          Length = 217989

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 126   caaaaatctgggaaataggtaaaa 149
             ||||||||||||||| ||||||||
Sbjct: 10578 caaaaatctgggaaagaggtaaaa 10555



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>gb|AF203743.1| Eonycteris spelaea 16S ribosomal RNA gene, complete sequence;
           mitochondrial gene for mitochondrial product
          Length = 1572

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 catgtagtcgttgagcttga 312
           ||||||||||||||||||||
Sbjct: 554 catgtagtcgttgagcttga 535



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>emb|AL929495.21| Zebrafish DNA sequence from clone CH211-136M16 in linkage group 12,
             complete sequence
          Length = 157568

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 119   acacacacaaaaatctgggaaataggtaaaaa 150
             ||||||||||||| |||| ||||| |||||||
Sbjct: 23475 acacacacaaaaaactggaaaatacgtaaaaa 23444



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>gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, complete sequence
          Length = 206693

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   gaggagtacacacacaaaaa 131
             ||||||||||||||||||||
Sbjct: 77623 gaggagtacacacacaaaaa 77642



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>gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, complete sequence
          Length = 213942

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 107    tacatgaggagtacacacacaaaa 130
              ||||||| ||||||||||||||||
Sbjct: 175815 tacatgaagagtacacacacaaaa 175792



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>emb|Y11658.1|ECVHL88 Equus caballus DNA for CA microsatellite, locus ECVHL88
          Length = 595

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 107 tacatgaggagtacacacac 126
           ||||||||||||||||||||
Sbjct: 317 tacatgaggagtacacacac 298



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>emb|AL713979.6| Mouse DNA sequence from clone RP23-434O7 on chromosome X, complete
              sequence
          Length = 148507

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    agtgtcatggtatttttcca 294
              ||||||||||||||||||||
Sbjct: 139391 agtgtcatggtatttttcca 139410


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,636,065
Number of Sequences: 3902068
Number of extensions: 3636065
Number of successful extensions: 72489
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72442
Number of HSP's gapped (non-prelim): 47
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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