ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VG55_ICHV1 (Q00153) Hypothetical gene 55 protein 30 1.2
2RNP3_PYRFU (Q8TZS0) Ribonuclease P protein component 3 (EC 3.1.2... 29 2.6
3PHO4_NEUCR (P15710) Phosphate-repressible phosphate permease 28 5.8
4ODP1_BUCAI (P57301) Pyruvate dehydrogenase E1 component (EC 1.2.... 27 9.9

>VG55_ICHV1 (Q00153) Hypothetical gene 55 protein|
          Length = 388

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 112 AKLVQIMLTVDFYVLHIGRQVLCQILQKEVLRQFP 216
           A+   + LTV  ++  +GR++ C ++ K   RQFP
Sbjct: 313 ARTQALRLTVYAHMARLGREIQCSVVTKVTFRQFP 347



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>RNP3_PYRFU (Q8TZS0) Ribonuclease P protein component 3 (EC 3.1.26.5) (RNase P|
           component 3)
          Length = 214

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -1

Query: 322 HGL*RMQNLQGVALSKKLVPKLHGNP 245
           H L RM N +GVAL   L P LH NP
Sbjct: 117 HVLARMMNKRGVALGFSLRPLLHQNP 142



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>PHO4_NEUCR (P15710) Phosphate-repressible phosphate permease|
          Length = 590

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 81  TNARLGVNLCSGIWNTI 31
           T A +GV LCSG W TI
Sbjct: 534 TGATVGVGLCSGTWRTI 550



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>ODP1_BUCAI (P57301) Pyruvate dehydrogenase E1 component (EC 1.2.4.1)|
          Length = 887

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = -1

Query: 304 QNLQGVALSKKLVPKLHGNPRYFSLVGAGLEIDEALLFAKFGKVLVCQYAKHRSQQL 134
           Q + G+ LS    PKL  N   F  V  GL    A+  AKF K L  +  K+ S+Q+
Sbjct: 168 QEVDGIGLSSYPHPKLMPNFWQFPTVSMGLGPLCAIYQAKFLKYLHNRELKNTSKQI 224


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,751,901
Number of Sequences: 219361
Number of extensions: 878400
Number of successful extensions: 2365
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2365
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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