>SECY_CYAPA (P25014) Preprotein translocase secY subunit|
          Length = 492

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 3   KNNAANIVESYAGYGLLHLAFVTKKIIPQLKATKFL 110
           +N  ANI+   +G   L + F T  I+P + A+ FL
Sbjct: 90  RNELANILNLLSGGAFLEIGFFTLGILPYMNASFFL 125

>POLG_EC09B (Q66577) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2202

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = +1

Query: 22  SSSHMQGTDCYILRXXXXXXXXXXXQQNFYVTTSGSTTTELALFAPT---YSAWSTSIAS 192
           +S+HM+GTD + ++             +F +    ST     L       Y+ WS SI  
Sbjct: 387 TSTHMEGTDAFQIKVTAGNVQDKSAIFSFQLNPGNSTVLRRTLLGEILNYYAHWSGSI-- 444

Query: 193 MESVSISFNFCPLSFA 240
                ++F FC  + A
Sbjct: 445 ----KLTFLFCGSAMA 456

>MBB1A_RAT (O35821) Myb-binding protein 1A (PAR-interacting protein) (PIP)|
          Length = 1344

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  IVESYAGYGLLHLAFVTKKIIPQLKATK 104
           +VE  A + L H  F TKK  PQ+  TK
Sbjct: 469 VVEQIARFCLFHAFFKTKKATPQIPETK 496

>MBB1A_MOUSE (Q7TPV4) Myb-binding protein 1A (Myb-binding protein of 160 kDa)|
          Length = 1344

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  IVESYAGYGLLHLAFVTKKIIPQLKATK 104
           +VE  A + L H  F TKK  PQ+  TK
Sbjct: 469 VVEQIARFCLFHAFFKTKKATPQIPETK 496

>POLG_EC09H (Q66849) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2192

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = +1

Query: 22  SSSHMQGTDCYILRXXXXXXXXXXXQQNFYVTTSGSTTTELALFAPT---YSAWSTSIAS 192
           +S+HM+GTD + ++             +F +    ST     L       Y+ WS SI  
Sbjct: 387 TSTHMEGTDAFQIKVTAGNVQDKNAIFSFQLNPGNSTVLRRTLLGEILNYYAHWSGSI-- 444

Query: 193 MESVSISFNFCPLSFA 240
                ++F FC  + A
Sbjct: 445 ----KLTFLFCGSAMA 456

>AMY1_LIPKO (Q01117) Alpha-amylase 1 precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase 1)
          Length = 624

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = +1

Query: 106 FYVTTSGSTTTELALFAPTYS----AWSTSIASMESVSIS 213
           +Y+T+SG+T + LAL  P +S     W+ S  +  +V I+
Sbjct: 78  YYLTSSGTTGSTLALILPVWSNNWELWTLSAIAAGAVEIT 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,022,960
Number of Sequences: 219361
Number of extensions: 476186
Number of successful extensions: 1108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)