Clone Name | rbart60h06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0046A04, complete sequence Length = 141001 Score = 52.0 bits (26), Expect = 8e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 160 acttattcagcttggtcgacttccattgcttcaa 193 ||||| |||| ||||||||||||||||||||||| Sbjct: 89245 acttaatcagtttggtcgacttccattgcttcaa 89212
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 52.0 bits (26), Expect = 8e-04 Identities = 32/34 (94%) Strand = Plus / Plus Query: 160 acttattcagcttggtcgacttccattgcttcaa 193 ||||| |||| ||||||||||||||||||||||| Sbjct: 6944 acttaatcagtttggtcgacttccattgcttcaa 6977
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 52.0 bits (26), Expect = 8e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 160 acttattcagcttggtcgacttccattgcttcaa 193 ||||| |||| ||||||||||||||||||||||| Sbjct: 11887518 acttaatcagtttggtcgacttccattgcttcaa 11887485
>dbj|AK105427.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D01, full insert sequence Length = 1271 Score = 52.0 bits (26), Expect = 8e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 160 acttattcagcttggtcgacttccattgcttcaa 193 ||||| |||| ||||||||||||||||||||||| Sbjct: 943 acttaatcagtttggtcgacttccattgcttcaa 910
>dbj|AK073252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023A06, full insert sequence Length = 1254 Score = 52.0 bits (26), Expect = 8e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 160 acttattcagcttggtcgacttccattgcttcaa 193 ||||| |||| ||||||||||||||||||||||| Sbjct: 956 acttaatcagtttggtcgacttccattgcttcaa 923
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 52.0 bits (26), Expect = 8e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 160 acttattcagcttggtcgacttccattgcttcaa 193 ||||| |||| ||||||||||||||||||||||| Sbjct: 11965925 acttaatcagtttggtcgacttccattgcttcaa 11965892
>dbj|AK102900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113A20, full insert sequence Length = 1130 Score = 44.1 bits (22), Expect = 0.20 Identities = 31/34 (91%) Strand = Plus / Minus Query: 160 acttattcagcttggtcgacttccattgcttcaa 193 ||||| |||| ||||||||||||||| ||||||| Sbjct: 989 acttaatcagtttggtcgacttccatagcttcaa 956
>gb|AC161423.1| Mus musculus BAC clone RP23-291E12 from chromosome 16, complete sequence Length = 226870 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 tatttccttcaacttttgtcctctt 231 |||||||||||| |||||||||||| Sbjct: 109829 tatttccttcaagttttgtcctctt 109853
>gb|AC131683.4| Mus musculus BAC clone RP23-359C21 from 16, complete sequence Length = 200615 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 tatttccttcaacttttgtcctctt 231 |||||||||||| |||||||||||| Sbjct: 145459 tatttccttcaagttttgtcctctt 145483
>emb|AJ224984.1|PDU224984 Platynereis dumerilii mRNA for wee1-like kinase Length = 3899 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 gcttcaatggagtccgtgagt 207 ||||||||||||||||||||| Sbjct: 215 gcttcaatggagtccgtgagt 235
>gb|AF038606.1| Caenorhabditis elegans cosmid C04C3, complete sequence Length = 43947 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gagtatttccttcaactttt 223 |||||||||||||||||||| Sbjct: 12780 gagtatttccttcaactttt 12761
>gb|AC011712.6|AC011712 Homo sapiens chromosome 18, clone RP11-188I24, complete sequence Length = 145165 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gagtatttccttcaactttt 223 |||||||||||||||||||| Sbjct: 103367 gagtatttccttcaactttt 103348 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,989,330 Number of Sequences: 3902068 Number of extensions: 1989330 Number of successful extensions: 34772 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34739 Number of HSP's gapped (non-prelim): 33 length of query: 242 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 220 effective length of database: 17,147,199,772 effective search space: 3772383949840 effective search space used: 3772383949840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)