ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome... 52 8e-04
2gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome... 52 8e-04
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
4dbj|AK105427.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
5dbj|AK073252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 52 8e-04
7dbj|AK102900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.20
8gb|AC161423.1| Mus musculus BAC clone RP23-291E12 from chromosom... 42 0.79
9gb|AC131683.4| Mus musculus BAC clone RP23-359C21 from 16, compl... 42 0.79
10emb|AJ224984.1|PDU224984 Platynereis dumerilii mRNA for wee1-lik... 42 0.79
11gb|AF038606.1| Caenorhabditis elegans cosmid C04C3, complete seq... 40 3.1
12gb|AC011712.6|AC011712 Homo sapiens chromosome 18, clone RP11-18... 40 3.1

>gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0046A04, complete sequence
          Length = 141001

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 160   acttattcagcttggtcgacttccattgcttcaa 193
             ||||| |||| |||||||||||||||||||||||
Sbjct: 89245 acttaatcagtttggtcgacttccattgcttcaa 89212



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>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0007C02, complete sequence
          Length = 148265

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                              
Query: 160  acttattcagcttggtcgacttccattgcttcaa 193
            ||||| |||| |||||||||||||||||||||||
Sbjct: 6944 acttaatcagtttggtcgacttccattgcttcaa 6977



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 160      acttattcagcttggtcgacttccattgcttcaa 193
                ||||| |||| |||||||||||||||||||||||
Sbjct: 11887518 acttaatcagtttggtcgacttccattgcttcaa 11887485



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>dbj|AK105427.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D01, full
           insert sequence
          Length = 1271

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 160 acttattcagcttggtcgacttccattgcttcaa 193
           ||||| |||| |||||||||||||||||||||||
Sbjct: 943 acttaatcagtttggtcgacttccattgcttcaa 910



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>dbj|AK073252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023A06, full
           insert sequence
          Length = 1254

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 160 acttattcagcttggtcgacttccattgcttcaa 193
           ||||| |||| |||||||||||||||||||||||
Sbjct: 956 acttaatcagtttggtcgacttccattgcttcaa 923



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 160      acttattcagcttggtcgacttccattgcttcaa 193
                ||||| |||| |||||||||||||||||||||||
Sbjct: 11965925 acttaatcagtttggtcgacttccattgcttcaa 11965892



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>dbj|AK102900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113A20, full
           insert sequence
          Length = 1130

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 160 acttattcagcttggtcgacttccattgcttcaa 193
           ||||| |||| ||||||||||||||| |||||||
Sbjct: 989 acttaatcagtttggtcgacttccatagcttcaa 956



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>gb|AC161423.1| Mus musculus BAC clone RP23-291E12 from chromosome 16, complete sequence
          Length = 226870

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 207    tatttccttcaacttttgtcctctt 231
              |||||||||||| ||||||||||||
Sbjct: 109829 tatttccttcaagttttgtcctctt 109853



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>gb|AC131683.4| Mus musculus BAC clone RP23-359C21 from 16, complete sequence
          Length = 200615

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 207    tatttccttcaacttttgtcctctt 231
              |||||||||||| ||||||||||||
Sbjct: 145459 tatttccttcaagttttgtcctctt 145483



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>emb|AJ224984.1|PDU224984 Platynereis dumerilii mRNA for wee1-like kinase
          Length = 3899

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 gcttcaatggagtccgtgagt 207
           |||||||||||||||||||||
Sbjct: 215 gcttcaatggagtccgtgagt 235



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>gb|AF038606.1| Caenorhabditis elegans cosmid C04C3, complete sequence
          Length = 43947

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   gagtatttccttcaactttt 223
             ||||||||||||||||||||
Sbjct: 12780 gagtatttccttcaactttt 12761



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>gb|AC011712.6|AC011712 Homo sapiens chromosome 18, clone RP11-188I24, complete sequence
          Length = 145165

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    gagtatttccttcaactttt 223
              ||||||||||||||||||||
Sbjct: 103367 gagtatttccttcaactttt 103348


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,989,330
Number of Sequences: 3902068
Number of extensions: 1989330
Number of successful extensions: 34772
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34739
Number of HSP's gapped (non-prelim): 33
length of query: 242
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 220
effective length of database: 17,147,199,772
effective search space: 3772383949840
effective search space used: 3772383949840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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