ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart60g11 |
|---|---|
| Clone Library Name | barley_pub |
>INSL3_RAT (Q9WUK0) Insulin-like 3 precursor (Leydig insulin-like peptide)| (Ley-I-L) (Relaxin-like factor) [Contains: Insulin-like 3 B chain; Insulin-like 3 A chain] Length = 128 Score = 30.8 bits (68), Expect = 0.96 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -2 Query: 255 GDPRGAPDGEQPADVRSREGDVRVQWAAPRH 163 G PR +P+ QP D R RE +QW RH Sbjct: 42 GGPRWSPEATQPVDTRDRE---LLQWLEQRH 69
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 30.8 bits (68), Expect = 0.96 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -3 Query: 254 VTLGGHQMENNLLMFDLVKETFAFS 180 +TLG Q+E NL++FDL + FS Sbjct: 383 ITLGARQLEENLVVFDLARSRVGFS 407
>GCSPB_SULTO (Q972C0) Probable glycine dehydrogenase [decarboxylating] subunit 2| (EC 1.4.4.2) (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2) Length = 505 Score = 30.4 bits (67), Expect = 1.3 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = +3 Query: 51 SFHQKYWNENAAFAKPGRDTLLIRTPHGEVEVAAGSADAEEQPTERERLLHEIEHQQVVL 230 S+HQ WNE F G+ + + P E S + E+ +E L E+ +V+ Sbjct: 2 SWHQAVWNEPLIFEYKGKGRIGFKIPEEEELKKEISINIPEKLRRKEIDLPELSELEVIR 61 Query: 231 HLV 239 H + Sbjct: 62 HFI 64
>METK_POPDE (P47916) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 395 Score = 29.6 bits (65), Expect = 2.1 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +3 Query: 63 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 230 +Y+NEN A T+LI T H E E+AA + +P E+ L E + + Sbjct: 176 EYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE----KTIF 231 Query: 231 HLVP 242 HL P Sbjct: 232 HLNP 235
>METK_MESCR (P93254) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 392 Score = 29.6 bits (65), Expect = 2.1 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +3 Query: 63 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 230 +Y+NEN A T+LI T H E E+AA + +P E+ L E + + Sbjct: 175 EYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE----KTIF 230 Query: 231 HLVP 242 HL P Sbjct: 231 HLNP 234
>INSL3_MOUSE (O09107) Insulin-like 3 precursor (Leydig insulin-like peptide)| (Ley-I-L) (Relaxin-like factor) [Contains: Insulin-like 3 B chain; Insulin-like 3 A chain] Length = 122 Score = 29.3 bits (64), Expect = 2.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -2 Query: 255 GDPRGAPDGEQPADVRSREGDVRVQWAAPRH 163 G PR +P+ QP + R RE +QW RH Sbjct: 42 GGPRWSPEATQPVETRDRE---LLQWLEQRH 69
>METL_DIACA (P24260) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 396 Score = 28.9 bits (63), Expect = 3.6 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Frame = +3 Query: 63 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 230 +Y+NEN A T+LI T H E E+AA + +P E+ L E + Sbjct: 179 EYYNENGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE----NTIF 234 Query: 231 HLVP 242 HL P Sbjct: 235 HLNP 238
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 28.5 bits (62), Expect = 4.8 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -3 Query: 254 VTLGGHQMENNLLMFDLVKETFAFS 180 VTLG Q+E L++FDL + FS Sbjct: 389 VTLGTRQLEEKLMVFDLARSRVGFS 413
>METL_CATRO (Q96552) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 393 Score = 28.5 bits (62), Expect = 4.8 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +3 Query: 63 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 230 +Y+N+N A T+LI T H E E+AA + +P E+ L E + + Sbjct: 175 EYYNDNGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVVPEKYLDE----KTIF 230 Query: 231 HLVP 242 HL P Sbjct: 231 HLNP 234
>C11BA_BACTJ (Q45730) Pesticidal crystal protein cry11Ba (Insecticidal| delta-endotoxin CryXIB(a)) (Crystaline entomocidal protoxin) (81 kDa crystal protein) Length = 724 Score = 28.5 bits (62), Expect = 4.8 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = -3 Query: 248 LGGHQMENNLLMFDLVKETFAFSGLLLGIRTTCSNFNFTMGSSY*KSVTSWFCECSVFV 72 LGG +E N D + ++F F LGI T+ +N F++ S + W+ + V Sbjct: 577 LGGIPVEGNSGWIDYITDSFTFDD--LGITTSSTNAFFSIDSDGVNASQQWYLSKLILV 633
>RRP3_CANGA (Q6FNK8) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)| Length = 493 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -3 Query: 203 VKETFAFSGLLLGIRTTC 150 +KETF G L+G+RTTC Sbjct: 157 IKETFDSLGSLMGVRTTC 174
>C11BB_BACTV (Q9ZIU5) Pesticidal crystal protein cry11Bb (Insecticidal| delta-endotoxin CryXIB(b)) (Crystaline entomocidal protoxin) (84 kDa crystal protein) Length = 750 Score = 28.1 bits (61), Expect = 6.2 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = -3 Query: 248 LGGHQMENNLLMFDLVKETFAFSGLLLGIRTTCSNFNFTMGSSY*KSVTSWFCECSVFV 72 LGG +E N D + ++F F+ LGI T +N F++ S + W+ + V Sbjct: 577 LGGIPVEGNSGWVDYITDSFTFND--LGITTASTNAFFSIDSDGVNASQQWYLSKLILV 633
>RRP3_ASHGO (Q75EW9) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)| Length = 487 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -3 Query: 203 VKETFAFSGLLLGIRTTC 150 +KETF G L+G+RTTC Sbjct: 150 IKETFDSLGSLMGVRTTC 167
>METM_ACTCH (P50303) S-adenosylmethionine synthetase 3 (EC 2.5.1.6) (Methionine| adenosyltransferase 3) (AdoMet synthetase 3) (Fragment) Length = 360 Score = 27.7 bits (60), Expect = 8.1 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +3 Query: 63 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 230 +Y+NEN A T+LI T H E ++AA + +P E+ L E + + Sbjct: 142 EYYNENGAMVPIRVHTVLISTQHDETVTNDKIAADLKEHVIRPVIPEKYLDE----KTIF 197 Query: 231 HLVP 242 HL P Sbjct: 198 HLNP 201
>TDRD3_HUMAN (Q9H7E2) Tudor domain-containing protein 3| Length = 651 Score = 27.7 bits (60), Expect = 8.1 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +3 Query: 18 SRHIRNTATVHSFHQKYWNENAAFAKPGRDTLLIRTPHGEVEV 146 S+ I N A +K++N N + P R I P+GEVE+ Sbjct: 458 SQTINNEAFSGIKIEKHFNVNTDYQNPVRSNSFIGVPNGEVEM 500
>DIS3_SCHPO (P37202) Mitotic control protein dis3| Length = 970 Score = 27.7 bits (60), Expect = 8.1 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = +3 Query: 120 RTPHGEVEVAAGSADAEEQPTERERLLHEIEHQ---QVVLHLVPPEGH 254 R P G G + +E TE L ++++H+ + VL +P EGH Sbjct: 433 RYPEGHFVRDLGEMETKEAETEALLLEYDVQHRPFPKAVLDCLPEEGH 480 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,848,151 Number of Sequences: 219361 Number of extensions: 570319 Number of successful extensions: 2018 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1989 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2018 length of database: 80,573,946 effective HSP length: 60 effective length of database: 67,412,286 effective search space used: 1617894864 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
