>MT12_MYTED (P80247) Metallothionein 10-II (MT-10-II)|
          Length = 72

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 128 CRMGQAVGISGASMSCSWQLVV--IDGSCQCG 39
           CR G A   SGA   CS   VV    GSC+CG
Sbjct: 23  CRCGDACKCSGADCKCSGCKVVCKCSGSCECG 54

>RTN4R_MACFA (Q9N0E3) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +1

Query: 52  EPSITTSCHEQLIEAPEIPTACP------ILHRTIQQKVVHRSVRAALNVGQRVLHLIVK 213
           EP +TTSC +Q ++A  +P   P       LH      V   S RA  N+    LH  V 
Sbjct: 36  EPKVTTSCPQQGLQA--VPAGIPASSQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL 93

Query: 214 SRMSCAPF 237
           +R+  A F
Sbjct: 94  ARIDAAAF 101

>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +1

Query: 52  EPSITTSCHEQLIEAPEIPTACP------ILHRTIQQKVVHRSVRAALNVGQRVLHLIVK 213
           EP +TTSC +Q ++A  +P   P       LH      V   S RA  N+    LH  V 
Sbjct: 36  EPKVTTSCPQQGLQA--VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL 93

Query: 214 SRMSCAPF 237
           +R+  A F
Sbjct: 94  ARIDAAAF 101

>GPR78_HUMAN (Q96P69) Probable G-protein coupled receptor 78|
          Length = 363

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 137 MVRCRMGQAVGISGASMSCSWQLVVIDGSCQCGLR 33
           ++ C  GQ++  SGA++ CSW L        C LR
Sbjct: 126 LLGCAWGQSLAFSGAALGCSW-LGYSSAFASCSLR 159

>RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2|
          Length = 1516

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
 Frame = +3

Query: 96  SRDPHCLPHPASHHSAKGCP*IRPSCSQ--RRATSTSPHCQKQDVLCTISLRQHSYAKVV 269
           S    C P P    + +  P    SC    R ATS  P  + Q +L     R H    + 
Sbjct: 796 SASTSCSPPPEQPTATESLPPWSHSCPSAVRPATSQQPQKEDQKILTLTEYRLHGTGSLP 855

Query: 270 PHSLWSS 290
           P   W S
Sbjct: 856 PLGSWRS 862

>MT10A_MYTED (P80246) Metallothionein 10-Ia (MT-10-Ia)|
          Length = 72

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -3

Query: 128 CRMGQAVGISGASMSCSWQLVV--IDGSCQCG 39
           CR G A   SGA   CS   VV    G C+CG
Sbjct: 23  CRCGDACKCSGADCKCSGCKVVCKCSGRCECG 54

>UFO1_YEAST (Q04511) Ubiquitin ligase complex F-box protein UFO1|
          Length = 668

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 276 NEEQLWRSCAASGKWCTRHPAFDNEVKYSLPYVE 175
           ++E+LW++   S    T  P F    K+S+ Y+E
Sbjct: 43  HDEELWKNLFKSRVHTTHFPTFSQSSKFSVEYIE 76

>RTN4R_MOUSE (Q99PI8) Reticulon-4 receptor precursor (Nogo receptor) (NgR)|
           (Nogo-66 receptor)
          Length = 473

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 52  EPSITTSCHEQLIEAPEIPTACPILHRTIQQKVVHRSVRAALNVGQRVLHLIVKSRMSC 228
           EP +TTSC +Q ++A  +PT  P    + Q+  +H         G R+ H+   S  SC
Sbjct: 36  EPKVTTSCPQQGLQA--VPTGIP---ASSQRIFLH---------GNRISHVPAASFQSC 80

>MT10B_MYTED (O62554) Metallothionein 10-Ib (MT-10-Ib)|
          Length = 72

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -3

Query: 128 CRMGQAVGISGASMSCSWQLVV--IDGSCQCG 39
           CR G A   +GA   CS   VV    G C+CG
Sbjct: 23  CRCGDACKCAGADCKCSGCKVVCKCSGRCECG 54

>VGNB_CPSMV (P36312) Genome polyprotein B (RNA1 polyprotein) [Contains:|
           Protease cofactor (32 kDa protein); Putative helicase
           (EC 3.6.1.-) (NTP-binding protein) (NTB)
           (Membrane-binding protein) (58 kDa protein); Viral
           genome-linked protein (VPg); Picornai
          Length = 1858

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -3

Query: 188 CPTLRAAR---TDLWTTFC*MVRCRMGQAVGI-SGASMSCSWQLVVIDGSCQCGLRTAQM 21
           CP   AA    T +WTT    V+  M     I +G +   SW + VI GSC   L    +
Sbjct: 180 CPMAVAACSWITTVWTTIKEWVQSAMDAMSWIMAGCTELISWGMCVIAGSCALSLLEKAL 239

Query: 20  *AIHLV 3
            A+ L+
Sbjct: 240 VAMGLI 245

>CORTO_DROME (P41046) Centrosomal and chromosomal factor (CCF)|
           (Chromocentrosomin)
          Length = 550

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 69  QLP*TAHRGSRDPHCLPHPASHHSAKG 149
           QL   A R +  PH + HP SH++AKG
Sbjct: 341 QLAALAARTALTPHHMLHPHSHYAAKG 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,327,381
Number of Sequences: 219361
Number of extensions: 951875
Number of successful extensions: 2763
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2760
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)