ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full... 396 e-107
2gb|AY831392.1| Oryza sativa (indica cultivar-group) BTH-induced ... 62 1e-06
3gb|DQ417199.1| Oryza sativa (japonica cultivar-group) putative E... 62 1e-06
4gb|AF364176.1| Oryza sativa putative EREBP-type transcription fa... 62 1e-06
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
6dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
7dbj|AK111690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
8dbj|AK104576.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
9dbj|AK104723.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
10emb|AJ575224.1|OSA575224 Oryza sativa (japonica cultivar-group) ... 48 0.016
11gb|AY105702.1| Zea mays PCO125609 mRNA sequence 46 0.062
12gb|AC126424.12| Mus musculus chromosome 17, clone RP23-19K10, co... 42 0.97
13gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, ... 42 0.97
14emb|BX950219.10| Mouse DNA sequence from clone RP23-303E24 on ch... 42 0.97
15emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chr... 42 0.97
16gb|AC079680.34| Mus musculus strain C57BL/6J chromosome 10 clone... 42 0.97
17gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, com... 40 3.8
18gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosom... 40 3.8
19emb|AL022101.1|HS845O24 Human DNA sequence from clone RP5-845O24... 40 3.8
20emb|CR854856.5| Human DNA sequence from clone RP13-299H21 on chr... 40 3.8
21emb|BX324164.15| Zebrafish DNA sequence from clone DKEY-14D8 in ... 40 3.8
22emb|CR854858.22| Human DNA sequence from clone RP13-177J6 on chr... 40 3.8

>gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full insert mRNA
            sequence
          Length = 1612

 Score =  396 bits (200), Expect = e-107
 Identities = 255/272 (93%), Gaps = 1/272 (0%)
 Strand = Plus / Minus

                                                                        
Query: 20   acatttgtgctgtccgcagaccacattgacaagaaccatcaataaccaccagctgccatg 79
            ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 1342 acatttgtgctatccgcagaccacactgacaagaaccatcaataaccaccagccgccatg 1283

                                                                        
Query: 80   aacagctcatcgaggctccagagatccccactgcttgccccatcctgcatcgcaccattc 139
            || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1282 aagagctcatcaaggctccagagatccccactgcttgccccgtcctgcatcgcaccattc 1223

                                                                        
Query: 140  agcaaaaggttgtccatagatccgtccgagctgctctcaacgtagggcaacgagtacttc 199
            |||| |||| ||||||| |||||||||||||||||||| || || |||||||||||||||
Sbjct: 1222 agcagaaggctgtccatcgatccgtccgagctgctctcgacataaggcaacgagtacttc 1163

                                                                        
Query: 200  acctcattgtcaaaagca-ggatgtcttgtgcaccatttccctgaggcagcacagctacg 258
            | ||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 1162 atctcatggtcaaaagcagggatgtcttgtgcaccatttccctgaggcagcacggctaca 1103

                                            
Query: 259  ccaaagttgttcctcattctctttggagctcc 290
            ||||||||||||||||||||||||||||||||
Sbjct: 1102 ccaaagttgttcctcattctctttggagctcc 1071



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>gb|AY831392.1| Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional
            factor 1 (BIERF1) mRNA, complete cds
          Length = 1613

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 66   caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125
            ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 1211 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1152

                                                                   
Query: 126  gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180
            |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 1151 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1097



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 263  agttgttcctcattctctttggagctcc 290
            |||||||||||||||||||||| |||||
Sbjct: 1001 agttgttcctcattctctttggcgctcc 974



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>gb|DQ417199.1| Oryza sativa (japonica cultivar-group) putative EREBP transcription
            factor (EREBP) mRNA, complete cds
          Length = 1445

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 66   caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125
            ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 1188 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1129

                                                                   
Query: 126  gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180
            |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 1128 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1074



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 263 agttgttcctcattctctttggagctcc 290
           |||||||||||||||||||||| |||||
Sbjct: 978 agttgttcctcattctctttggcgctcc 951



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>gb|AF364176.1| Oryza sativa putative EREBP-type transcription factor mRNA, complete
            cds
          Length = 1584

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 66   caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125
            ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 1262 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1203

                                                                   
Query: 126  gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180
            |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 1202 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1148



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 263  agttgttcctcattctctttggagctcc 290
            |||||||||||||||||||||| |||||
Sbjct: 1052 agttgttcctcattctctttggcgctcc 1025



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                            
Query: 66       caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125
                ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 15907586 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 15907527

                                                                       
Query: 126      gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180
                |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 15907526 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 15907472



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 263      agttgttcctcattctctttggagctcc 290
                |||||||||||||||||||||| |||||
Sbjct: 15907376 agttgttcctcattctctttggcgctcc 15907349



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>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1081_G10
          Length = 107955

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                         
Query: 66    caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125
             ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 70712 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 70653

                                                                    
Query: 126   gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180
             |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 70652 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 70598



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 263   agttgttcctcattctctttggagctcc 290
             |||||||||||||||||||||| |||||
Sbjct: 70502 agttgttcctcattctctttggcgctcc 70475



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>dbj|AK111690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008G03, full
            insert sequence
          Length = 1603

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 66   caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125
            ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 1292 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1233

                                                                   
Query: 126  gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180
            |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 1232 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1178



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 263  agttgttcctcattctctttggagctcc 290
            |||||||||||||||||||||| |||||
Sbjct: 1082 agttgttcctcattctctttggcgctcc 1055



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>dbj|AK104576.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A07, full
            insert sequence
          Length = 1596

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 66   caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125
            ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 1286 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1227

                                                                   
Query: 126  gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180
            |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 1226 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1172



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 263  agttgttcctcattctctttggagctcc 290
            |||||||||||||||||||||| |||||
Sbjct: 1076 agttgttcctcattctctttggcgctcc 1049



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>dbj|AK104723.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B05, full
            insert sequence
          Length = 1596

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 66   caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125
            ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 1286 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1227

                                                                   
Query: 126  gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180
            |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 1226 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1172



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 263  agttgttcctcattctctttggagctcc 290
            |||||||||||||||||||||| |||||
Sbjct: 1076 agttgttcctcattctctttggcgctcc 1049



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>emb|AJ575224.1|OSA575224 Oryza sativa (japonica cultivar-group) partial mRNA for EREBP-1
           protein
          Length = 585

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 263 agttgttcctcattctctttggagctcc 290
           |||||||||||||||||||||| |||||
Sbjct: 505 agttgttcctcattctctttggcgctcc 478



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>gb|AY105702.1| Zea mays PCO125609 mRNA sequence
          Length = 1889

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 76   catgaacagctcatcgaggctccagagatccccactgcttgccccatcctg 126
            ||||| |||||| ||||||||||||| ||||||   ||| |||||||||||
Sbjct: 1510 catgagcagctcgtcgaggctccagatatccccggcgctcgccccatcctg 1460



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>gb|AC126424.12| Mus musculus chromosome 17, clone RP23-19K10, complete sequence
          Length = 182696

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 230   caccatttccctgaggcagca 250
             |||||||||||||||||||||
Sbjct: 19989 caccatttccctgaggcagca 19969



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>gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete
              Sequence, complete sequence
          Length = 194881

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 68     ccagctgccatgaacagctca 88
              |||||||||||||||||||||
Sbjct: 180890 ccagctgccatgaacagctca 180910



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>emb|BX950219.10| Mouse DNA sequence from clone RP23-303E24 on chromosome 4, complete
             sequence
          Length = 167874

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    aaccatcaataaccaccagct 73
             |||||||||||||||||||||
Sbjct: 58533 aaccatcaataaccaccagct 58513



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>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete
              sequence
          Length = 268616

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 230    caccatttccctgaggcagca 250
              |||||||||||||||||||||
Sbjct: 105481 caccatttccctgaggcagca 105461



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>gb|AC079680.34| Mus musculus strain C57BL/6J chromosome 10 clone rp23-282p18, complete
             sequence
          Length = 175217

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    ccagctgccatgaacagctca 88
             |||||||||||||||||||||
Sbjct: 64305 ccagctgccatgaacagctca 64325



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>gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, complete sequence
          Length = 222692

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    caccagctgccatgaacagc 85
             ||||||||||||||||||||
Sbjct: 38373 caccagctgccatgaacagc 38354



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>gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosome 5, complete sequence
          Length = 180745

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     caccagctgccatgaacagc 85
              ||||||||||||||||||||
Sbjct: 171209 caccagctgccatgaacagc 171190



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>emb|AL022101.1|HS845O24 Human DNA sequence from clone RP5-845O24 on chromosome 1p36.1-36.2
             Contains the 3' end of the gene for a novel protein
             similar to preferentially expressed antigen in melanoma
             (PRAME) (LOC65121), four genes for novel proteins similar
             to preferentially expressed antigen in melanoma (PRAME)
             (LOC343068, LOC65122, LOC343070 and LOC343071), a novel
             gene, a pseudogene similar to preferentially expressed
             antigen in melanoma (PRAME) and the gene for a novel
             protein similar to heterogeneous nuclear ribonucleoprotein
             C (C1/C2) (HNRPC) (LOC343069), complete sequence
          Length = 119198

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 226   tgtgcaccatttccctgaggcagc 249
             ||||| ||||||||||||||||||
Sbjct: 52213 tgtgctccatttccctgaggcagc 52190



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>emb|CR854856.5| Human DNA sequence from clone RP13-299H21 on chromosome 1, complete
              sequence
          Length = 186712

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 226    tgtgcaccatttccctgaggcagc 249
              ||||| ||||||||||||||||||
Sbjct: 123612 tgtgctccatttccctgaggcagc 123589



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>emb|BX324164.15| Zebrafish DNA sequence from clone DKEY-14D8 in linkage group 4
            Contains the gene for a novel protein similar to
            vertebrate selenoprotein family, the gene for a novel
            protein similar to vertebrate vascular endothelial growth
            factor (VEGF), the gene for a novel protein similar to
            vertebrate mitogen-activated protein kinase family, the
            gene for a novel protein similar to vertebrate
            mitogen-activated protein kinase family, the gene for a
            novel protein similar to vertebrate scavenger receptor
            protein, two genes for novel proteins similar to
            vertebrate protein deleted in malignant brain tumors 1,
            fifteen novel genes and three CpG islands, complete
            sequence
          Length = 264155

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  tcattgtcaaaagcaggatg 222
            ||||||||||||||||||||
Sbjct: 6033 tcattgtcaaaagcaggatg 6052



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>emb|CR854858.22| Human DNA sequence from clone RP13-177J6 on chromosome 1, complete
              sequence
          Length = 168039

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 226    tgtgcaccatttccctgaggcagc 249
              ||||| ||||||||||||||||||
Sbjct: 138900 tgtgctccatttccctgaggcagc 138877


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,407,364
Number of Sequences: 3902068
Number of extensions: 2407364
Number of successful extensions: 39470
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39415
Number of HSP's gapped (non-prelim): 54
length of query: 292
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 270
effective length of database: 17,147,199,772
effective search space: 4629743938440
effective search space used: 4629743938440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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