Clone Name | rbart60g10 |
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Clone Library Name | barley_pub |
>gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full insert mRNA sequence Length = 1612 Score = 396 bits (200), Expect = e-107 Identities = 255/272 (93%), Gaps = 1/272 (0%) Strand = Plus / Minus Query: 20 acatttgtgctgtccgcagaccacattgacaagaaccatcaataaccaccagctgccatg 79 ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct: 1342 acatttgtgctatccgcagaccacactgacaagaaccatcaataaccaccagccgccatg 1283 Query: 80 aacagctcatcgaggctccagagatccccactgcttgccccatcctgcatcgcaccattc 139 || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1282 aagagctcatcaaggctccagagatccccactgcttgccccgtcctgcatcgcaccattc 1223 Query: 140 agcaaaaggttgtccatagatccgtccgagctgctctcaacgtagggcaacgagtacttc 199 |||| |||| ||||||| |||||||||||||||||||| || || ||||||||||||||| Sbjct: 1222 agcagaaggctgtccatcgatccgtccgagctgctctcgacataaggcaacgagtacttc 1163 Query: 200 acctcattgtcaaaagca-ggatgtcttgtgcaccatttccctgaggcagcacagctacg 258 | ||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 1162 atctcatggtcaaaagcagggatgtcttgtgcaccatttccctgaggcagcacggctaca 1103 Query: 259 ccaaagttgttcctcattctctttggagctcc 290 |||||||||||||||||||||||||||||||| Sbjct: 1102 ccaaagttgttcctcattctctttggagctcc 1071
>gb|AY831392.1| Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 1 (BIERF1) mRNA, complete cds Length = 1613 Score = 61.9 bits (31), Expect = 1e-06 Identities = 94/115 (81%) Strand = Plus / Minus Query: 66 caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125 ||||||||||||||| ||||||||| |||||||||| || | |||||||||| || | Sbjct: 1211 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1152 Query: 126 gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180 | | ||| |||| ||| |||||||||||| ||| | || |||||||||||||| Sbjct: 1151 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1097 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Minus Query: 263 agttgttcctcattctctttggagctcc 290 |||||||||||||||||||||| ||||| Sbjct: 1001 agttgttcctcattctctttggcgctcc 974
>gb|DQ417199.1| Oryza sativa (japonica cultivar-group) putative EREBP transcription factor (EREBP) mRNA, complete cds Length = 1445 Score = 61.9 bits (31), Expect = 1e-06 Identities = 94/115 (81%) Strand = Plus / Minus Query: 66 caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125 ||||||||||||||| ||||||||| |||||||||| || | |||||||||| || | Sbjct: 1188 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1129 Query: 126 gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180 | | ||| |||| ||| |||||||||||| ||| | || |||||||||||||| Sbjct: 1128 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1074 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Minus Query: 263 agttgttcctcattctctttggagctcc 290 |||||||||||||||||||||| ||||| Sbjct: 978 agttgttcctcattctctttggcgctcc 951
>gb|AF364176.1| Oryza sativa putative EREBP-type transcription factor mRNA, complete cds Length = 1584 Score = 61.9 bits (31), Expect = 1e-06 Identities = 94/115 (81%) Strand = Plus / Minus Query: 66 caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125 ||||||||||||||| ||||||||| |||||||||| || | |||||||||| || | Sbjct: 1262 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1203 Query: 126 gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180 | | ||| |||| ||| |||||||||||| ||| | || |||||||||||||| Sbjct: 1202 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1148 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Minus Query: 263 agttgttcctcattctctttggagctcc 290 |||||||||||||||||||||| ||||| Sbjct: 1052 agttgttcctcattctctttggcgctcc 1025
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 61.9 bits (31), Expect = 1e-06 Identities = 94/115 (81%) Strand = Plus / Minus Query: 66 caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125 ||||||||||||||| ||||||||| |||||||||| || | |||||||||| || | Sbjct: 15907586 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 15907527 Query: 126 gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180 | | ||| |||| ||| |||||||||||| ||| | || |||||||||||||| Sbjct: 15907526 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 15907472 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Minus Query: 263 agttgttcctcattctctttggagctcc 290 |||||||||||||||||||||| ||||| Sbjct: 15907376 agttgttcctcattctctttggcgctcc 15907349
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1081_G10 Length = 107955 Score = 61.9 bits (31), Expect = 1e-06 Identities = 94/115 (81%) Strand = Plus / Minus Query: 66 caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125 ||||||||||||||| ||||||||| |||||||||| || | |||||||||| || | Sbjct: 70712 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 70653 Query: 126 gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180 | | ||| |||| ||| |||||||||||| ||| | || |||||||||||||| Sbjct: 70652 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 70598 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Minus Query: 263 agttgttcctcattctctttggagctcc 290 |||||||||||||||||||||| ||||| Sbjct: 70502 agttgttcctcattctctttggcgctcc 70475
>dbj|AK111690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008G03, full insert sequence Length = 1603 Score = 61.9 bits (31), Expect = 1e-06 Identities = 94/115 (81%) Strand = Plus / Minus Query: 66 caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125 ||||||||||||||| ||||||||| |||||||||| || | |||||||||| || | Sbjct: 1292 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1233 Query: 126 gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180 | | ||| |||| ||| |||||||||||| ||| | || |||||||||||||| Sbjct: 1232 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1178 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Minus Query: 263 agttgttcctcattctctttggagctcc 290 |||||||||||||||||||||| ||||| Sbjct: 1082 agttgttcctcattctctttggcgctcc 1055
>dbj|AK104576.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A07, full insert sequence Length = 1596 Score = 61.9 bits (31), Expect = 1e-06 Identities = 94/115 (81%) Strand = Plus / Minus Query: 66 caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125 ||||||||||||||| ||||||||| |||||||||| || | |||||||||| || | Sbjct: 1286 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1227 Query: 126 gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180 | | ||| |||| ||| |||||||||||| ||| | || |||||||||||||| Sbjct: 1226 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1172 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Minus Query: 263 agttgttcctcattctctttggagctcc 290 |||||||||||||||||||||| ||||| Sbjct: 1076 agttgttcctcattctctttggcgctcc 1049
>dbj|AK104723.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B05, full insert sequence Length = 1596 Score = 61.9 bits (31), Expect = 1e-06 Identities = 94/115 (81%) Strand = Plus / Minus Query: 66 caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 125 ||||||||||||||| ||||||||| |||||||||| || | |||||||||| || | Sbjct: 1286 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1227 Query: 126 gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 180 | | ||| |||| ||| |||||||||||| ||| | || |||||||||||||| Sbjct: 1226 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1172 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Minus Query: 263 agttgttcctcattctctttggagctcc 290 |||||||||||||||||||||| ||||| Sbjct: 1076 agttgttcctcattctctttggcgctcc 1049
>emb|AJ575224.1|OSA575224 Oryza sativa (japonica cultivar-group) partial mRNA for EREBP-1 protein Length = 585 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Minus Query: 263 agttgttcctcattctctttggagctcc 290 |||||||||||||||||||||| ||||| Sbjct: 505 agttgttcctcattctctttggcgctcc 478
>gb|AY105702.1| Zea mays PCO125609 mRNA sequence Length = 1889 Score = 46.1 bits (23), Expect = 0.062 Identities = 44/51 (86%) Strand = Plus / Minus Query: 76 catgaacagctcatcgaggctccagagatccccactgcttgccccatcctg 126 ||||| |||||| ||||||||||||| |||||| ||| ||||||||||| Sbjct: 1510 catgagcagctcgtcgaggctccagatatccccggcgctcgccccatcctg 1460
>gb|AC126424.12| Mus musculus chromosome 17, clone RP23-19K10, complete sequence Length = 182696 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 caccatttccctgaggcagca 250 ||||||||||||||||||||| Sbjct: 19989 caccatttccctgaggcagca 19969
>gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete Sequence, complete sequence Length = 194881 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ccagctgccatgaacagctca 88 ||||||||||||||||||||| Sbjct: 180890 ccagctgccatgaacagctca 180910
>emb|BX950219.10| Mouse DNA sequence from clone RP23-303E24 on chromosome 4, complete sequence Length = 167874 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 aaccatcaataaccaccagct 73 ||||||||||||||||||||| Sbjct: 58533 aaccatcaataaccaccagct 58513
>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete sequence Length = 268616 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 caccatttccctgaggcagca 250 ||||||||||||||||||||| Sbjct: 105481 caccatttccctgaggcagca 105461
>gb|AC079680.34| Mus musculus strain C57BL/6J chromosome 10 clone rp23-282p18, complete sequence Length = 175217 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ccagctgccatgaacagctca 88 ||||||||||||||||||||| Sbjct: 64305 ccagctgccatgaacagctca 64325
>gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, complete sequence Length = 222692 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 caccagctgccatgaacagc 85 |||||||||||||||||||| Sbjct: 38373 caccagctgccatgaacagc 38354
>gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosome 5, complete sequence Length = 180745 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 caccagctgccatgaacagc 85 |||||||||||||||||||| Sbjct: 171209 caccagctgccatgaacagc 171190
>emb|AL022101.1|HS845O24 Human DNA sequence from clone RP5-845O24 on chromosome 1p36.1-36.2 Contains the 3' end of the gene for a novel protein similar to preferentially expressed antigen in melanoma (PRAME) (LOC65121), four genes for novel proteins similar to preferentially expressed antigen in melanoma (PRAME) (LOC343068, LOC65122, LOC343070 and LOC343071), a novel gene, a pseudogene similar to preferentially expressed antigen in melanoma (PRAME) and the gene for a novel protein similar to heterogeneous nuclear ribonucleoprotein C (C1/C2) (HNRPC) (LOC343069), complete sequence Length = 119198 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 tgtgcaccatttccctgaggcagc 249 ||||| |||||||||||||||||| Sbjct: 52213 tgtgctccatttccctgaggcagc 52190
>emb|CR854856.5| Human DNA sequence from clone RP13-299H21 on chromosome 1, complete sequence Length = 186712 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 tgtgcaccatttccctgaggcagc 249 ||||| |||||||||||||||||| Sbjct: 123612 tgtgctccatttccctgaggcagc 123589
>emb|BX324164.15| Zebrafish DNA sequence from clone DKEY-14D8 in linkage group 4 Contains the gene for a novel protein similar to vertebrate selenoprotein family, the gene for a novel protein similar to vertebrate vascular endothelial growth factor (VEGF), the gene for a novel protein similar to vertebrate mitogen-activated protein kinase family, the gene for a novel protein similar to vertebrate mitogen-activated protein kinase family, the gene for a novel protein similar to vertebrate scavenger receptor protein, two genes for novel proteins similar to vertebrate protein deleted in malignant brain tumors 1, fifteen novel genes and three CpG islands, complete sequence Length = 264155 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tcattgtcaaaagcaggatg 222 |||||||||||||||||||| Sbjct: 6033 tcattgtcaaaagcaggatg 6052
>emb|CR854858.22| Human DNA sequence from clone RP13-177J6 on chromosome 1, complete sequence Length = 168039 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 tgtgcaccatttccctgaggcagc 249 ||||| |||||||||||||||||| Sbjct: 138900 tgtgctccatttccctgaggcagc 138877 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,407,364 Number of Sequences: 3902068 Number of extensions: 2407364 Number of successful extensions: 39470 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39415 Number of HSP's gapped (non-prelim): 54 length of query: 292 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 270 effective length of database: 17,147,199,772 effective search space: 4629743938440 effective search space used: 4629743938440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)