ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1T2R19_RAT (Q9JKU1) Taste receptor type 2 member 19 (T2R19) (Tast... 35 0.043
2T2R19_MOUSE (Q9JKT2) Taste receptor type 2 member 19 (T2R19) 33 0.16
3IMPI_GALME (P82176) Inducible metalloproteinase inhibitor protei... 30 1.4
4NODJ_AZOCA (Q07757) Nodulation protein J 30 1.4
5NOL11_XENLA (Q6INI5) Nucleolar protein 11 30 1.8
6RRPL_HANTV (P23456) RNA-directed RNA polymerase (EC 2.7.7.48) (L... 30 1.8
7CYAA_HAEIN (P40134) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophos... 28 5.2
8MATRX_CDVO (P06943) Matrix protein 28 5.2
9HGD_EMENI (Q00667) Homogentisate 1,2-dioxygenase (EC 1.13.11.5) ... 28 5.2
10SWI1_YEAST (P09547) Transcription regulatory protein SWI1 (SWI/S... 28 6.8
11CRUM1_HUMAN (P82279) Crumbs homolog 1 precursor 27 8.9
12CS015_MACFA (Q4R6B2) Protein C19orf15 homolog precursor 27 8.9
13SYI2_BURPS (Q63KP6) Isoleucyl-tRNA synthetase 2 (EC 6.1.1.5) (Is... 27 8.9
14SYI2_BURMA (Q62CD5) Isoleucyl-tRNA synthetase 2 (EC 6.1.1.5) (Is... 27 8.9

>T2R19_RAT (Q9JKU1) Taste receptor type 2 member 19 (T2R19) (Taste receptor|
           type 2 member 1) (T2R1)
          Length = 335

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +2

Query: 284 IFCVSTQRA*LQVPISFAQLCIFCLLASQVPSNSCTCIYL 403
           +FC++T R  LQ+ I FAQLC+F L+   +  ++ T +++
Sbjct: 48  LFCLATSRIILQLCILFAQLCLFSLVRHTLFEDNITFVFI 87



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>T2R19_MOUSE (Q9JKT2) Taste receptor type 2 member 19 (T2R19)|
          Length = 335

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +2

Query: 284 IFCVSTQRA*LQVPISFAQLCIFCLLASQVPSNSCTCIYL 403
           +FC++T R  LQ+ I FAQL + CL+   + +++ T +Y+
Sbjct: 48  LFCLATSRIILQLCILFAQLGLSCLVRHTLFADNVTFVYI 87



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>IMPI_GALME (P82176) Inducible metalloproteinase inhibitor protein precursor|
           [Contains: IMPI alpha]
          Length = 170

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
 Frame = -1

Query: 239 PPVFTVSCCAKLHCI-------GCG*NPGCSILNITPPCL 141
           PP   +S  AK  CI       GC  N G   LN+T PC+
Sbjct: 116 PPETCISLVAKFSCIDSPPPSPGCSCNSGYLRLNLTSPCI 155



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>NODJ_AZOCA (Q07757) Nodulation protein J|
          Length = 254

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 164 LNITPPCLVEYVLGSAVLVAYELKSGSTVKILVFTFYTYLSGGIICYV 21
           +   P C+ +Y++G  +  AYE     T+  +   F  Y+ G  + Y+
Sbjct: 95  MRYAPICVSDYLIGEVLWAAYEGVVAGTIVAVCTAFLGYIPGWSVIYI 142



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>NOL11_XENLA (Q6INI5) Nucleolar protein 11|
          Length = 720

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 167 ILNITPPCLVEYVLGSAVLVAYELKSGSTVKILVFTFYTYLSGGIICYVPF 15
           I   +P C+ +Y L      +  L    +VK  +FT  T  S G +C  PF
Sbjct: 183 IHKFSPVCVCKYHLKPNTEDSTILDCSGSVKSKIFTLLTLYSSGQVCQTPF 233



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>RRPL_HANTV (P23456) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)|
          Length = 2151

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 15/105 (14%)
 Frame = +1

Query: 79  TVDPLFNSYATRTAEPRTYSTRQGGVIFRILHPGF*PQPIQCNFAQQDTVNT--GGEKHQ 252
           T + + N YA R    +T + R+ G  F++       +    + A  D +N    GEKH 
Sbjct: 345 TREDMINYYAPRIQFKQTQNVREPGT-FKLTSSMLRAE----SKAMLDLLNNHKSGEKHG 399

Query: 253 LDVNSKSFQLHLLREHSTSLVT-------------STHQLCTTLH 348
             + S +   H+++  S SL+T             ST +  TT H
Sbjct: 400 AQIESLNIASHIVQSESVSLITKILSDLELNITEPSTQEYSTTKH 444



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>CYAA_HAEIN (P40134) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 843

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 243 EASARCQF-EILPTPSSA*ALNEPSYKYPSALHNFASSAFL 362
           EA +   F E+L TP      N+ S +YP  +  FAS  FL
Sbjct: 713 EAESAVDFDEVLQTPIEDGETNQESRRYPPEMDAFASEGFL 753



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>MATRX_CDVO (P06943) Matrix protein|
          Length = 335

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +1

Query: 232 TGGEKHQLDVNSKSFQLHLLREHSTSL----VTSTHQLCTTLHLLPSCFPSSFQFMYLHL 399
           T G K QL V   +  LH+L      L    V S +Q+C T++L+P      F+ +Y+ +
Sbjct: 104 TAGVKEQL-VFYNNTPLHILTPWKKVLTSGSVFSANQVCNTVNLIPLDIAQRFRVVYMSI 162

Query: 400 S 402
           +
Sbjct: 163 T 163



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>HGD_EMENI (Q00667) Homogentisate 1,2-dioxygenase (EC 1.13.11.5)|
           (Homogentisicase) (Homogentisate oxygenase)
           (Homogentisic acid oxidase)
          Length = 448

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = +2

Query: 71  KFSLLTHFLTHMLQGQQNLEHTPLDKGG*YSEYYTQDFNHNQYNVTLHSKIR*TRVERSI 250
           ++ L + F  H+   +Q  +HTP D    +  YY   ++  ++N              ++
Sbjct: 247 EYRLYSKFNNHLFSARQ--DHTPFDIVAWHGNYYPYKYDLGRFN--------------TM 290

Query: 251 SSMSIRNPSNSIFCVST 301
            S+S  +P  SI+ V T
Sbjct: 291 GSVSFDHPDPSIYTVLT 307



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>SWI1_YEAST (P09547) Transcription regulatory protein SWI1 (SWI/SNF complex|
           component SWI1) (Transcription regulatory protein ADR6)
           (Regulatory protein GAM3)
          Length = 1314

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 161 SEYYTQDFNHNQYNVTLHSKI 223
           S+YY +D   NQY VT H K+
Sbjct: 775 SDYYYEDAGSNQYYVTQHDKM 795



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>CRUM1_HUMAN (P82279) Crumbs homolog 1 precursor|
          Length = 1406

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 284  WSWKDFELTSS*CFSPPVFTVSCCAKLHCIGCG*NPGCSILN 159
            WS K  EL    CFS P    +C  ++    C   PG + +N
Sbjct: 1169 WSGKHCELNIDECFSNPCIHGNCSDRVAAYHCTCEPGYTGVN 1210



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>CS015_MACFA (Q4R6B2) Protein C19orf15 homolog precursor|
          Length = 1159

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 350 RCKVVQS*WVLVTRLVECSRRRWSWKDFE 264
           R +V+Q  W L+  L+  SRR W+ KDFE
Sbjct: 15  RVRVLQVLWALLAVLL-ASRRLWAIKDFE 42



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>SYI2_BURPS (Q63KP6) Isoleucyl-tRNA synthetase 2 (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase 2) (IleRS 2)
          Length = 967

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 400 IDAGT*IGRNLGSKKAEDAKLCKADGYL*LGSLSAHAEDGVGRIS 266
           +DAGT I     +  AEDA+LC+      LG    +  DG GR +
Sbjct: 323 LDAGTGIVHLAPAHGAEDAELCRR-----LGIAGENVVDGAGRFA 362



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>SYI2_BURMA (Q62CD5) Isoleucyl-tRNA synthetase 2 (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase 2) (IleRS 2)
          Length = 967

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 400 IDAGT*IGRNLGSKKAEDAKLCKADGYL*LGSLSAHAEDGVGRIS 266
           +DAGT I     +  AEDA+LC+      LG    +  DG GR +
Sbjct: 323 LDAGTGIVHLAPAHGAEDAELCRR-----LGIAGENVVDGAGRFA 362


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,485,253
Number of Sequences: 219361
Number of extensions: 1240260
Number of successful extensions: 2737
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2737
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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