ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart60g07 |
|---|---|
| Clone Library Name | barley_pub |
>MURE_BUCAI (P57316) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 497 Score = 30.0 bits (66), Expect = 1.5 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 1/101 (0%) Frame = +1 Query: 13 KNLKYIEHK*KKLNLNINMVGSCICLTQLLR*FDEF*ATMYYQKLLFIPQARQVQRREKW 192 K L + HK KK+ LN + I L +LL +Y + I +Q + KW Sbjct: 225 KWLLFSTHKVKKIILNADDQYGKIWLKKLLN---------FYTVAVTIQNRKQKKYSTKW 275 Query: 193 RGEEKVASGKNSIHVHSKHSY-FGKLPS**TCRISVAGLLL 312 + NSI++ + S+ G++ S R +V LLL Sbjct: 276 INATNIEQNNNSIYITFESSWGTGRISSCLIGRFNVTNLLL 316
>CLPX_STRMU (Q8DUI0) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 410 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/46 (26%), Positives = 24/46 (52%) Frame = +2 Query: 182 GRNGEGRKRLLLGRTLYMCTQSILISGSCLRNELAGFQLLGFCSAP 319 G+N + K+++ G +++C + + +S +R ELA L P Sbjct: 17 GKNQDEVKKIIAGNGVFICNECVELSQEIIREELAEEVLADLSEVP 62
>ABCA1_HUMAN (O95477) ATP-binding cassette sub-family A member 1 (ATP-binding| cassette transporter 1) (ATP-binding cassette 1) (ABC-1) (Cholesterol efflux regulatory protein) Length = 2261 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = +3 Query: 69 GGFMYLSDPVTQMIRRILSNYVLPKTLVYSASSPGP 176 GGF YL D V Q I R+L+ KT VY P P Sbjct: 591 GGFAYLQDVVEQAIIRVLTG-TEKKTGVYMQQMPYP 625
>NU4M_ASCSU (P24880) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 409 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -1 Query: 119 NSSNHLSNWVRQIHEPTMFMFKFSFFYLCSIYFRFFFLW 3 NSS +L + P +F++ SFF++ +YF F W Sbjct: 119 NSSYYLIFYAALCSFPFLFVYFKSFFFISLVYFDFNLSW 157
>CLPX_CLOPE (Q8XKK2) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 435 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 Query: 182 GRNGEGRKRLLLGRTLYMCTQSILISGSCLRNELAG 289 G+N E KRL+ G +Y+C + I + + +E G Sbjct: 16 GKNQEQVKRLIAGPGVYICDECIELCSEIIEDEFEG 51
>DUR3_YEAST (P33413) Urea active transporter| Length = 735 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = +2 Query: 143 NSCLFRKLARSNEGRNGEGRKRLLLGRTLYMCTQSILISGSCLRNELAGFQLLGFC 310 N+ + +L R+ G+ G G T + T +L SGS + ++L G + C Sbjct: 116 NAHTYLELVRTRYGKIGHGCYLFYAIATNILVTSMLLTSGSAVFSDLTGMNTIASC 171
>ABCA1_MOUSE (P41233) ATP-binding cassette sub-family A member 1 (ATP-binding| cassette transporter 1) (ATP-binding cassette 1) (ABC-1) Length = 2261 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = +3 Query: 69 GGFMYLSDPVTQMIRRILSNYVLPKTLVYSASSPGP 176 GGF YL D V Q I R+L+ KT VY P P Sbjct: 591 GGFAYLQDVVEQAIIRVLTGSE-KKTGVYVQQMPYP 625
>UNG_MYCTU (P67071) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 227 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = +3 Query: 201 GKGCFWEELYTCALKAFLFREAAFVMNLQDFSCWASALHPMMPQLMSRNC 350 GKG WE + CA++A R A V L W + P L + NC Sbjct: 142 GKG--WEAVTECAIRALAARAAPLVAIL-----WGRDASTLKPMLAAGNC 184
>UNG_MYCBO (P67072) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 227 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = +3 Query: 201 GKGCFWEELYTCALKAFLFREAAFVMNLQDFSCWASALHPMMPQLMSRNC 350 GKG WE + CA++A R A V L W + P L + NC Sbjct: 142 GKG--WEAVTECAIRALAARAAPLVAIL-----WGRDASTLKPMLAAGNC 184
>SFRP5_MOUSE (Q9WU66) Secreted frizzled-related protein 5 precursor (sFRP-5)| Length = 314 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 65 FMFKFSFFYLCSIYFRFFF 9 F KF F Y CS+Y+ FF+ Sbjct: 290 FAVKFMFSYPCSLYYPFFY 308
>SFRP5_HUMAN (Q5T4F7) Secreted frizzled-related protein 5 precursor (sFRP-5)| (Secreted apoptosis-related protein 3) (SARP-3) (Frizzled-related protein 1b) (FRP-1b) Length = 317 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 65 FMFKFSFFYLCSIYFRFFF 9 F KF F Y CS+Y+ FF+ Sbjct: 293 FAVKFMFSYPCSLYYPFFY 311
>SFRP5_BOVIN (Q9XSC1) Secreted frizzled-related protein 5 precursor (sFRP-5)| Length = 315 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 65 FMFKFSFFYLCSIYFRFFF 9 F KF F Y CS+Y+ FF+ Sbjct: 291 FAVKFMFSYPCSLYYPFFY 309
>SIX4_MOUSE (Q61321) Homeobox protein SIX4 (Sine oculis homeobox homolog 4)| (Skeletal muscle-specific ARE binding protein AREC3) Length = 775 Score = 27.7 bits (60), Expect = 7.3 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Frame = +3 Query: 72 GFMYLSDPVTQMIRRILSNYVLPKTLVYSASSPGPTKGEMERGG--KGCFWEELYTCALK 245 G + S+P T ++ + + P +VY+ + G T G +++ G +G + +L Sbjct: 522 GSTFTSEPATVQHGKLFLSPLTPSAVVYTVPNSGQTVGAVKQEGLERGLVFSQLMP---- 577 Query: 246 AFLFREAAFVMNLQDFSCWASALHPMMPQLMS 341 + A +L + S LHP+ L++ Sbjct: 578 --VNHSAQVNASLSSENLSGSGLHPLTSSLVN 607
>CLPX_RALSO (Q8XYP6) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 424 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/51 (25%), Positives = 27/51 (52%) Frame = +2 Query: 182 GRNGEGRKRLLLGRTLYMCTQSILISGSCLRNELAGFQLLGFCSAPDDAPT 334 G++ K+L+ G ++++C + I + +R+E A + G + D PT Sbjct: 19 GKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAISEKEGGLAVKSDLPT 69
>ENP1_BOVIN (O18956) Ectonucleoside triphosphate diphosphohydrolase 1 (EC| 3.6.1.5) (NTPDase1) (Ecto-ATP diphosphohydrolase) (ATPDase) (Lymphoid cell activation antigen) (CD39 antigen) (Ecto-apyrase) Length = 513 Score = 27.3 bits (59), Expect = 9.5 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = +2 Query: 128 LCITKNSCLFRKLARSNEGRNGEGRKRLLLGRTLYMCTQSILISGSCL-RNEL 283 LC K+ L +KLA +G NG + R + S+L G C R+EL Sbjct: 254 LCYGKDQALLQKLALGLQGTNGIIHEPCFHSRYMRKIKMSVLNEGFCTKRHEL 306
>NAGZ_PASMU (Q9CPH0) Beta-hexosaminidase (EC 3.2.1.52)| (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) Length = 351 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +3 Query: 93 PVTQMIRRILSNYVLPKTLVYSASSPGPTKG 185 P Q+I++ + N ++P ++YS P P G Sbjct: 197 PFQQLIQQNMLNAIMPAHVIYSQCDPQPASG 227
>CLPX_STRP8 (P63795) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 409 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/46 (21%), Positives = 24/46 (52%) Frame = +2 Query: 182 GRNGEGRKRLLLGRTLYMCTQSILISGSCLRNELAGFQLLGFCSAP 319 G++ + K+++ G +++C + + +S ++ ELA L P Sbjct: 17 GKSQDDVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVP 62
>CLPX_STRP6 (Q5XCM0) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 409 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/46 (21%), Positives = 24/46 (52%) Frame = +2 Query: 182 GRNGEGRKRLLLGRTLYMCTQSILISGSCLRNELAGFQLLGFCSAP 319 G++ + K+++ G +++C + + +S ++ ELA L P Sbjct: 17 GKSQDDVKKIIAGNNVFICNECVALSQEIIKEELAEKVLADLTEVP 62
>CLPX_STRP3 (P63794) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 409 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/46 (21%), Positives = 24/46 (52%) Frame = +2 Query: 182 GRNGEGRKRLLLGRTLYMCTQSILISGSCLRNELAGFQLLGFCSAP 319 G++ + K+++ G +++C + + +S ++ ELA L P Sbjct: 17 GKSQDDVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVP 62
>CLPX_STRP1 (P63793) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 409 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/46 (21%), Positives = 24/46 (52%) Frame = +2 Query: 182 GRNGEGRKRLLLGRTLYMCTQSILISGSCLRNELAGFQLLGFCSAP 319 G++ + K+++ G +++C + + +S ++ ELA L P Sbjct: 17 GKSQDDVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVP 62
>UPPS_METJA (Q58767) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP| synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) Length = 280 Score = 27.3 bits (59), Expect = 9.5 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 19/95 (20%) Frame = +3 Query: 66 HGGFMYLSDPVTQMIRRILSNYVLPKTL--------VYSASSPGP-------TKGEMERG 200 +GG + D V ++ ++ + P+ + +Y+A+ P P T GE ER Sbjct: 178 YGGQQEIIDAVKKIAEKVKRGEIEPEDIDKELIDKHLYTANLPFPNPDLIIRTSGE-ERI 236 Query: 201 GKGCFWE----ELYTCALKAFLFREAAFVMNLQDF 293 W+ ELY C + LFR F+ ++D+ Sbjct: 237 SNFLIWQSSYSELYFCDIYWPLFRRVDFLRAVRDY 271
>GLNA1_FRAAL (P46033) Glutamine synthetase 1 (EC 6.3.1.2) (Glutamine synthetase| I) (Glutamate--ammonia ligase I) (GSI) Length = 474 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +3 Query: 60 HKHGGFMYLSDPVTQMIRRILSNYVLPKTLVYSA 161 H + ++P T RR++ Y P LVYSA Sbjct: 307 HHAPALLAFTNPTTNSYRRLVPGYEAPVNLVYSA 340 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,850,571 Number of Sequences: 219361 Number of extensions: 970004 Number of successful extensions: 2810 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2764 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2809 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
