ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KRA98_HUMAN (Q9BYQ0) Keratin-associated protein 9-8 (Keratin-ass... 29 2.4
2KR415_HUMAN (Q9BYQ5) Keratin-associated protein 4-15 (Keratin-as... 28 7.0
3KRA47_HUMAN (Q9BYR0) Keratin-associated protein 4-7 (Keratin-ass... 28 7.0
4YDM5_SCHPO (P87136) Hypothetical protein C57A7.05 in chromosome I 27 9.1
5YGL1_SCHPO (Q9Y7J8) Hypothetical protein C216.01c in chromosome II 27 9.1
6Y461_CHLTR (O84467) Hypothetical metallophosphoesterase CT_461 p... 27 9.1
7VACA3_HELPY (Q48253) Vacuolating cytotoxin precursor 27 9.1
8MTH9_DROME (Q9W0R6) Probable G-protein coupled receptor Mth-like... 27 9.1
9HKT1_ARATH (Q84TI7) Sodium transporter HKT1 (AtHKT1) 27 9.1
10ZN599_HUMAN (Q96NL3) Zinc finger protein 599 27 9.1

>KRA98_HUMAN (Q9BYQ0) Keratin-associated protein 9-8 (Keratin-associated protein|
           9.8) (Ultrahigh sulfur keratin-associated protein 9.8)
          Length = 159

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 187 VCIFQCCLRY*CGALLHCTYPKCANVSTCGSLSFVSNACS 68
           +C+  CC    C     C  P C   ++CGS    S++C+
Sbjct: 60  ICVTSCCQPSCCST--PCCQPTCCGQTSCGSSCGQSSSCA 97



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>KR415_HUMAN (Q9BYQ5) Keratin-associated protein 4-15 (Keratin-associated|
           protein 4.15) (Ultrahigh sulfur keratin-associated
           protein 4.15) (Fragment)
          Length = 193

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 214 CS*ASERACVCIFQCCLRY*CGAL---LHCTYPKCANVSTCGSLSFVSNAC 71
           C  +  R C C   CCLR  CG +     C  P C  +STC      +++C
Sbjct: 143 CESSCCRPCCCRPCCCLRPVCGRVSCHTTCYRPTCV-ISTCPRPLCCASSC 192



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>KRA47_HUMAN (Q9BYR0) Keratin-associated protein 4-7 (Keratin-associated protein|
           4.7) (Ultrahigh sulfur keratin-associated protein 4.7)
          Length = 210

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 214 CS*ASERACVCIFQCCLRY*CGAL---LHCTYPKCANVSTCGSLSFVSNAC 71
           C  +  R C C   CCLR  CG +     C  P C  +STC      +++C
Sbjct: 160 CESSCCRPCCCRPCCCLRPVCGRVSCHTTCYRPTCV-ISTCPRPLCCASSC 209



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>YDM5_SCHPO (P87136) Hypothetical protein C57A7.05 in chromosome I|
          Length = 1337

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 236  CNYRSTVLFLSERASVCVYLSVLSTLLVWCTSSLHLPKMCKRQYLWF 96
            C YR T  F S    + V++  + TL V CT    +P  C+    W+
Sbjct: 902  CGYRLTKFFKSIFRPMNVFVLKVGTLAVICT----IPAFCRSSAGWY 944



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>YGL1_SCHPO (Q9Y7J8) Hypothetical protein C216.01c in chromosome II|
          Length = 836

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 6/37 (16%)
 Frame = -3

Query: 374 PLQEPRLV------YSISHGMDGILSRIVHQPSFVLI 282
           P+Q+PR++      + + +  D ++SRIV +PSF ++
Sbjct: 291 PIQDPRILAKIHQTFKLQYLRDVVVSRIVDEPSFSVL 327



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>Y461_CHLTR (O84467) Hypothetical metallophosphoesterase CT_461 precursor (EC|
           3.1.-.-)
          Length = 329

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 372 PSRAATSILNQPWNGWNPIAYCSSTIICADRC 277
           P  +    +N+   GW  I +CS   IC  RC
Sbjct: 294 PEESRLLYVNRGLGGWKRIRFCSPPEICLMRC 325



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>VACA3_HELPY (Q48253) Vacuolating cytotoxin precursor|
          Length = 1310

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +1

Query: 115 LHILGRCSEEVHHTSNVDNTERYTHTLARSLKNSTVDR*LQEVPAMIQPRSNARATISTN 294
           L+ +  C   + + S V+N E Y +   ++ KN+ +++        +   +N+  T ST 
Sbjct: 800 LNDIKACGMAIGNQSMVNNPENYKYLEGKAWKNTGINKTANNTTIAVNLGNNSTPTNSTT 859

Query: 295 D 297
           D
Sbjct: 860 D 860



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>MTH9_DROME (Q9W0R6) Probable G-protein coupled receptor Mth-like 9 precursor|
           (Protein methuselah-like 9)
          Length = 513

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
 Frame = -1

Query: 235 VIIGLPYCS*ASERACVCIFQCCLRY*CGALL-------HCTYPKCANVSTCGSLSFVS 80
           VI G+ Y +    R CVC+ + C+ + C   L       +CT P     ST   L++ +
Sbjct: 67  VIDGVEYRAKKHLRGCVCLLKPCISFCCPENLVFDAKHWNCTMPHQVRESTHVELTYAN 125



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>HKT1_ARATH (Q84TI7) Sodium transporter HKT1 (AtHKT1)|
          Length = 506

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 242 TSCNYRSTVLFLSERASVCVYLSVLSTLLV 153
           T  +YR  ++ + ERAS C+Y  VLS  LV
Sbjct: 138 TVTDYREGLIKIDERASKCLYSVVLSYHLV 167



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>ZN599_HUMAN (Q96NL3) Zinc finger protein 599|
          Length = 588

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 380 GHPLQEPRLVYSISHGMD 327
           GHP+ +P L+Y + HG +
Sbjct: 49  GHPVPKPELIYLLEHGQE 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,243,146
Number of Sequences: 219361
Number of extensions: 973456
Number of successful extensions: 2394
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2392
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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