ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, com... 68 2e-08
2gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
3gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
4gb|AC126262.4| Mus musculus BAC clone RP23-359F12 from chromosom... 52 0.001
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
6dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 52 0.001
7ref|NM_014978.1| Homo sapiens sortilin-related VPS10 domain cont... 50 0.005
8gb|AY491806.1| Euphydryas aurinia clone EA26 microsatellite sequ... 50 0.005
9emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chro... 50 0.005
10emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chr... 50 0.005
11dbj|AB028982.1| Homo sapiens mRNA for KIAA1059 protein, complete... 50 0.005
12gb|AC104538.2| Homo sapiens chromosome 19 clone CTB-66B24, compl... 48 0.021
13gb|AC186368.1| Pan troglodytes chromosome 7 clone CH251-329G12, ... 46 0.083
14emb|AL359273.11| Human DNA sequence from clone RP11-376N17 on ch... 46 0.083
15emb|AJ271796.1|ZMA271796 Zea mays mRNA for plasma membrane intri... 46 0.083
16emb|BX548248.9| Zebrafish DNA sequence from clone DKEY-245P14 in... 46 0.083
17gb|AF326489.1|AF326489 Zea mays plasma membrane integral protein... 46 0.083
18emb|BX530412.8| Zebrafish DNA sequence from clone DKEY-42F6 in l... 46 0.083
19emb|BX649324.3| Zebrafish DNA sequence from clone DKEY-85M15 in ... 46 0.083
20gb|AY107675.1| Zea mays PCO112712 mRNA sequence 46 0.083
21gb|AC131671.3| Mus musculus BAC clone RP23-312H8 from chromosome... 44 0.33
22dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
23dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
24emb|BX296535.7| Zebrafish DNA sequence from clone CH211-234I2, c... 44 0.33
25ref|XM_521598.1| PREDICTED: Pan troglodytes similar to bA127O4.1... 42 1.3
26gb|AC155163.4| Mus musculus BAC clone RP24-341A18 from chromosom... 42 1.3
27gb|AC161765.5| Mus musculus BAC clone RP23-85I5 from chromosome ... 42 1.3
28gb|AC004849.1| Homo sapiens PAC clone RP4-659J6 from 7, complete... 42 1.3
29gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, co... 42 1.3
30gb|AC020915.6|AC020915 Homo sapiens chromosome 19 clone CTD-3138... 42 1.3
31gb|AC018465.8| Homo sapiens BAC clone RP11-350D5 from 2, complet... 42 1.3
32emb|CT025539.18| Mouse DNA sequence from clone RP23-221K23 on ch... 42 1.3
33gb|AC166111.4| Mus musculus BAC clone RP23-68O7 from chromosome ... 40 5.1
34ref|XM_633657.1| Dictyostelium discoideum hypothetical protein (... 40 5.1
35ref|XM_468463.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.1
36gb|BT018400.1| Zea mays clone EL01N0323H01.d mRNA sequence 40 5.1
37gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
38gb|DQ207683.1| Zea mays cultivar inbred line Mo17 IDP251 marker 40 5.1
39gb|DQ207682.1| Zea mays cultivar B73 IDP251 marker 40 5.1
40gb|AC145905.4| Pan troglodytes BAC clone RP43-9I21 from 7, compl... 40 5.1
41emb|AJ312850.1|RSE312850 Rhodeus sericeus microsatellite DNA Rse... 40 5.1
42gb|AC122832.4| Mus musculus BAC clone RP23-179D3 from 12, comple... 40 5.1
43ref|XM_674483.1| Plasmodium berghei strain ANKA hypothetical pro... 40 5.1
44emb|AL445673.9| Human DNA sequence from clone RP1-45C12 on chrom... 40 5.1
45emb|AL162455.14| Human DNA sequence from clone RP11-62D23 on chr... 40 5.1
46emb|X87608.2|RPNODHPQG Rhizobium tropici nodI, nodJ, nodH, nodP ... 40 5.1
47emb|BX548059.13| Zebrafish DNA sequence from clone DKEYP-80D11 i... 40 5.1
48emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 i... 40 5.1
49dbj|AB242853.1| Quercus mongolica var. crispula DNA, microsatell... 40 5.1
50dbj|AK128557.1| Homo sapiens cDNA FLJ46716 fis, clone TRACH30181... 40 5.1
51gb|AC109600.2| Homo sapiens chromosome 16 clone RP11-7O14, compl... 40 5.1
52gb|AC023823.7| Homo sapiens chromosome 16 clone RP11-163K4, comp... 40 5.1
53gb|AF390559.1|AF390559 Sphyraena idiastes cytosolic malate dehyd... 40 5.1
54emb|BX001037.13| Zebrafish DNA sequence from clone DKEY-107I16 i... 40 5.1
55dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
56dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
57gb|AF326490.1|AF326490 Zea mays plasma membrane integral protein... 40 5.1
58gb|AF326488.1|AF326488 Zea mays plasma membrane integral protein... 40 5.1
59gb|AF326487.1|AF326487 Zea mays plasma membrane integral protein... 40 5.1
60ref|XM_574724.1| PREDICTED: Rattus norvegicus FK506 binding prot... 40 5.1
61gb|AC055817.12| Mus musculus, clone RP23-154I7, complete sequence 40 5.1
62gb|AY170841.1| Axonopus compressus plasma membrane MIP protein m... 40 5.1
63gb|AC008080.1|AC008080 Homo sapiens clone RP11-89N17 from 7p14-1... 40 5.1
64gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, com... 40 5.1
65dbj|AP004026.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
66gb|AY937239.1| Chlamydomonas incerta plus agglutinin (SAG1) gene... 40 5.1
67dbj|AK102174.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
68emb|BX255922.4| Zebrafish DNA sequence from clone CH211-125A15 i... 40 5.1
69emb|BX936317.16| Zebrafish DNA sequence from clone CH211-208C9 i... 40 5.1
70emb|BX005062.4| Zebrafish DNA sequence from clone CH211-95I5 in ... 40 5.1
71gb|AY103580.1| Zea mays PCO072544 mRNA sequence 40 5.1
72gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
73emb|AL714010.11| Mouse DNA sequence from clone RP23-455F14 on ch... 40 5.1
74gb|U87981.1|SBU87981 Sorghum bicolor membrane intrinsic protein ... 40 5.1
75gb|U47272.1|RTU47272 Rhizobium tropici nodulation protein nodH, ... 40 5.1
76gb|AY879266.1| Homo sapiens flavin containing monooxygenase 1 (F... 40 5.1
77dbj|AB029325.1| Oryza sativa gene for water channel protein RWC3... 40 5.1
78dbj|AB016623.1| Oryza sativa gene for RWC-3, complete cds 40 5.1 
>gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, complete cds
          Length = 1248

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                             
Query: 352 actagtcgcggctcttgaaggggatggccctgat 385
           ||||||||||||||||||||||||||||||||||
Sbjct: 942 actagtcgcggctcttgaaggggatggccctgat 909
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>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08,
              complete sequence
          Length = 115026

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 182    acacacacacgctcgctcgctcgctc 207
              ||||||||||||||||||||||||||
Sbjct: 111061 acacacacacgctcgctcgctcgctc 111036
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>gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1345_B12,
             complete sequence
          Length = 119909

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 182   acacacacacgctcgctcgctcgctc 207
             ||||||||||||||||||||||||||
Sbjct: 25253 acacacacacgctcgctcgctcgctc 25228
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>gb|AC126262.4| Mus musculus BAC clone RP23-359F12 from chromosome 12, complete sequence
          Length = 208710

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 182    acacacacacgctcgctcgctcgctc 207
              ||||||||||||||||||||||||||
Sbjct: 138231 acacacacacgctcgctcgctcgctc 138256
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 182      acacacacacgctcgctcgctcgctc 207
                ||||||||||||||||||||||||||
Sbjct: 26872821 acacacacacgctcgctcgctcgctc 26872796
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>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds
          Length = 1285

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 352 actagtcgcggctcttgaaggggatggccctgat 385
           ||||| ||||||||||||||||||| ||||||||
Sbjct: 957 actagccgcggctcttgaaggggatcgccctgat 924
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>ref|NM_014978.1| Homo sapiens sortilin-related VPS10 domain containing receptor 3
           (SORCS3), mRNA
          Length = 5757

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 181 tacacacacacgctcgctcgctcgc 205
           |||||||||||||||||||||||||
Sbjct: 118 tacacacacacgctcgctcgctcgc 142
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>gb|AY491806.1| Euphydryas aurinia clone EA26 microsatellite sequence
          Length = 429

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 184 acacacacgctcgctcgctcgctca 208
           |||||||||||||||||||||||||
Sbjct: 315 acacacacgctcgctcgctcgctca 291
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>emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chromosome 10 Contains two
             novel genes, the 5'end of the gene for VPS10 domain
             receptor protein SORCS 3 (SORCS3) and a CpG island,
             complete sequence
          Length = 153764

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 181   tacacacacacgctcgctcgctcgc 205
             |||||||||||||||||||||||||
Sbjct: 85719 tacacacacacgctcgctcgctcgc 85743
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>emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chromosome 10 Contains two
              novel genes, the 5'end of the gene for VPS10 domain
              receptor protein SORCS 3 (SORCS3) and one CpG island,
              complete sequence
          Length = 183833

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 181    tacacacacacgctcgctcgctcgc 205
              |||||||||||||||||||||||||
Sbjct: 171862 tacacacacacgctcgctcgctcgc 171886
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>dbj|AB028982.1| Homo sapiens mRNA for KIAA1059 protein, complete cds
          Length = 5757

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 181 tacacacacacgctcgctcgctcgc 205
           |||||||||||||||||||||||||
Sbjct: 118 tacacacacacgctcgctcgctcgc 142
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>gb|AC104538.2| Homo sapiens chromosome 19 clone CTB-66B24, complete sequence
          Length = 54423

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 185   cacacacgctcgctcgctcgctca 208
             ||||||||||||||||||||||||
Sbjct: 49593 cacacacgctcgctcgctcgctca 49570
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>gb|AC186368.1| Pan troglodytes chromosome 7 clone CH251-329G12, complete sequence
          Length = 146205

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 167   acaacactgaaagatacacacac 189
             |||||||||||||||||||||||
Sbjct: 91606 acaacactgaaagatacacacac 91628
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>emb|AL359273.11| Human DNA sequence from clone RP11-376N17 on chromosome 1 Contains the
              gene for dnaj-like protein (LOC148418), the urate oxidase
              (UOX) pseudogene, a novel pseudogene and the gene for DNase
              II-like acid DNase (DLAD), complete sequence
          Length = 205034

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 167    acaacactgaaagatacacacac 189
              |||||||||||||||||||||||
Sbjct: 119566 acaacactgaaagatacacacac 119588
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>emb|AJ271796.1|ZMA271796 Zea mays mRNA for plasma membrane intrinsic protein (pip4 gene)
          Length = 1364

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 355 agtcgcggctcttgaaggggatggccctgat 385
           |||||||||||||||| |||| |||||||||
Sbjct: 946 agtcgcggctcttgaaagggagggccctgat 916
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>emb|BX548248.9| Zebrafish DNA sequence from clone DKEY-245P14 in linkage group 1,
             complete sequence
          Length = 173643

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 182   acacacacacgctcgctcgctcg 204
             |||||||||||||||||||||||
Sbjct: 91070 acacacacacgctcgctcgctcg 91048
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>gb|AF326489.1|AF326489 Zea mays plasma membrane integral protein ZmPIP1-5 mRNA, complete
           cds
          Length = 1338

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 355 agtcgcggctcttgaaggggatggccctgat 385
           |||| |||||||||||||||| |||||||||
Sbjct: 937 agtcacggctcttgaaggggagggccctgat 907
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>emb|BX530412.8| Zebrafish DNA sequence from clone DKEY-42F6 in linkage group 4, complete
              sequence
          Length = 218203

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 182    acacacacacgctcgctcgctcgctca 208
              ||||||||| |||||||||||||||||
Sbjct: 110228 acacacacatgctcgctcgctcgctca 110202
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>emb|BX649324.3| Zebrafish DNA sequence from clone DKEY-85M15 in linkage group 4, complete
              sequence
          Length = 218137

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 182    acacacacacgctcgctcgctcgctca 208
              ||||||||| |||||||||||||||||
Sbjct: 109740 acacacacatgctcgctcgctcgctca 109714
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>gb|AY107675.1| Zea mays PCO112712 mRNA sequence
          Length = 791

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 355 agtcgcggctcttgaaggggatggccctgat 385
           |||| |||||||||||||||| |||||||||
Sbjct: 370 agtcacggctcttgaaggggagggccctgat 340
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>gb|AC131671.3| Mus musculus BAC clone RP23-312H8 from chromosome 3, complete sequence
          Length = 195851

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 166    gacaacactgaaagatacacacacac 191
              |||||||| |||||||||||||||||
Sbjct: 159278 gacaacacagaaagatacacacacac 159253
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 186      acacacgctcgctcgctcgctc 207
                ||||||||||||||||||||||
Sbjct: 20645192 acacacgctcgctcgctcgctc 20645171
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>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0024F24
          Length = 172642

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 186    acacacgctcgctcgctcgctc 207
              ||||||||||||||||||||||
Sbjct: 107168 acacacgctcgctcgctcgctc 107147
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>emb|BX296535.7| Zebrafish DNA sequence from clone CH211-234I2, complete sequence
          Length = 163120

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 331   attccatggctgattgagtata 352
             ||||||||||||||||||||||
Sbjct: 50610 attccatggctgattgagtata 50631
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>ref|XM_521598.1| PREDICTED: Pan troglodytes similar to bA127O4.1 (KIAA1059 protein)
            (LOC466196), mRNA
          Length = 2466

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 181  tacacacacacgctcgctcgctcgc 205
            ||||||||| |||||||||||||||
Sbjct: 1304 tacacacactcgctcgctcgctcgc 1328
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>gb|AC155163.4| Mus musculus BAC clone RP24-341A18 from chromosome 8, complete sequence
          Length = 207406

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 187    cacacgctcgctcgctcgctc 207
              |||||||||||||||||||||
Sbjct: 102172 cacacgctcgctcgctcgctc 102152
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>gb|AC161765.5| Mus musculus BAC clone RP23-85I5 from chromosome 8, complete sequence
          Length = 219629

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   cacacgctcgctcgctcgctc 207
             |||||||||||||||||||||
Sbjct: 24868 cacacgctcgctcgctcgctc 24848
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>gb|AC004849.1| Homo sapiens PAC clone RP4-659J6 from 7, complete sequence
          Length = 126801

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   acacacacacgctcgctcgct 202
             |||||||||||||||||||||
Sbjct: 10108 acacacacacgctcgctcgct 10088
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>gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, complete sequence
          Length = 214124

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 123    tttgggtaggtgcagtgaaga 143
              |||||||||||||||||||||
Sbjct: 131923 tttgggtaggtgcagtgaaga 131943
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>gb|AC020915.6|AC020915 Homo sapiens chromosome 19 clone CTD-3138B18, complete sequence
          Length = 160852

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 326   catccattccatggctgattg 346
             |||||||||||||||||||||
Sbjct: 47541 catccattccatggctgattg 47561
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>gb|AC018465.8| Homo sapiens BAC clone RP11-350D5 from 2, complete sequence
          Length = 167073

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 49     tcattccttgttattttatac 69
              |||||||||||||||||||||
Sbjct: 137409 tcattccttgttattttatac 137389
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>emb|CT025539.18| Mouse DNA sequence from clone RP23-221K23 on chromosome 12, complete
             sequence
          Length = 167603

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 182   acacacacacgctcgctcgctcgct 206
             |||||||||||| ||||||||||||
Sbjct: 89328 acacacacacgcacgctcgctcgct 89352
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>gb|AC166111.4| Mus musculus BAC clone RP23-68O7 from chromosome 1, complete sequence
          Length = 185692

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    tgaaagatacacacacacgc 193
              ||||||||||||||||||||
Sbjct: 111426 tgaaagatacacacacacgc 111407
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>ref|XM_633657.1| Dictyostelium discoideum hypothetical protein (DDB0185844), partial
           mRNA
          Length = 1902

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 aaatgatggttgatgaacaa 310
           ||||||||||||||||||||
Sbjct: 849 aaatgatggttgatgaacaa 830
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>ref|XM_468463.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1319

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 354  tagtcgcggctcttgaaggggatggccctgat 385
            ||||| ||||||||||||||||| || |||||
Sbjct: 1018 tagtcccggctcttgaaggggattgctctgat 987
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>gb|BT018400.1| Zea mays clone EL01N0323H01.d mRNA sequence
          Length = 1154

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 362 gctcttgaaggggatggccctgat 385
           ||||||||| ||||||||||||||
Sbjct: 820 gctcttgaacgggatggccctgat 797
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>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0045P14, complete sequence
          Length = 121894

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 184   acacacacgctcgctcgctcgctc 207
             |||||| |||||||||||||||||
Sbjct: 80167 acacacgcgctcgctcgctcgctc 80190
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>gb|DQ207683.1| Zea mays cultivar inbred line Mo17 IDP251 marker
          Length = 824

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 362 gctcttgaaggggatggccctgat 385
           ||||||||| ||||||||||||||
Sbjct: 258 gctcttgaacgggatggccctgat 281
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>gb|DQ207682.1| Zea mays cultivar B73 IDP251 marker
          Length = 763

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 362 gctcttgaaggggatggccctgat 385
           ||||||||| ||||||||||||||
Sbjct: 519 gctcttgaacgggatggccctgat 496
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>gb|AC145905.4| Pan troglodytes BAC clone RP43-9I21 from 7, complete sequence
          Length = 187893

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 167    acaacactgaaagatacacacaca 190
              |||| |||||||||||||||||||
Sbjct: 101375 acaaaactgaaagatacacacaca 101352
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>emb|AJ312850.1|RSE312850 Rhodeus sericeus microsatellite DNA Rser 10, clone BITT2E01
          Length = 264

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 185 cacacacgctcgctcgctcgctca 208
           ||||||||| ||||||||||||||
Sbjct: 57  cacacacgcgcgctcgctcgctca 34
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>gb|AC122832.4| Mus musculus BAC clone RP23-179D3 from 12, complete sequence
          Length = 224056

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   actgaaagatacacacacac 191
             ||||||||||||||||||||
Sbjct: 57604 actgaaagatacacacacac 57585
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>ref|XM_674483.1| Plasmodium berghei strain ANKA hypothetical protein (PB000747.02.0)
            partial mRNA
          Length = 2235

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   tcgttaattcgatcttcatt 53
            ||||||||||||||||||||
Sbjct: 1403 tcgttaattcgatcttcatt 1384
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>emb|AL445673.9| Human DNA sequence from clone RP1-45C12 on chromosome 1 Contains part
            of the FMO1 gene for flavin containing monooxygenase 1
            and the 5' end of a novel gene, complete sequence
          Length = 13892

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  tccatccattccatggctga 343
            ||||||||||||||||||||
Sbjct: 5537 tccatccattccatggctga 5556
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>emb|AL162455.14| Human DNA sequence from clone RP11-62D23 on chromosome 13 Contains part
              of the GPC6 gene for glypican 6 and a novel gene, complete
              sequence
          Length = 173736

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    acaacactgaaagatacaca 186
              ||||||||||||||||||||
Sbjct: 132503 acaacactgaaagatacaca 132484
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>emb|X87608.2|RPNODHPQG Rhizobium tropici nodI, nodJ, nodH, nodP and nodQ genes, and ORF1 for
            putative aldo-keto reductase
          Length = 6013

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  acacgctcgctcgctcgctc 207
            ||||||||||||||||||||
Sbjct: 3021 acacgctcgctcgctcgctc 3040
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>emb|BX548059.13| Zebrafish DNA sequence from clone DKEYP-80D11 in linkage group 12,
              complete sequence
          Length = 205581

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    acacacacacgctcgctcgc 201
              ||||||||||||||||||||
Sbjct: 176269 acacacacacgctcgctcgc 176288
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>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12,
             complete sequence
          Length = 155592

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   aacgtagacaacactgaaag 179
             ||||||||||||||||||||
Sbjct: 67604 aacgtagacaacactgaaag 67585
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>dbj|AB242853.1| Quercus mongolica var. crispula DNA, microsatellite marker: bcqm76
          Length = 396

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ttccatggctgattgagtat 351
           ||||||||||||||||||||
Sbjct: 255 ttccatggctgattgagtat 274
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>dbj|AK128557.1| Homo sapiens cDNA FLJ46716 fis, clone TRACH3018108, highly  similar
           to 51 kDa FK506-binding protein
          Length = 3530

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 189 cacgctcgctcgctcgctca 208
           ||||||||||||||||||||
Sbjct: 50  cacgctcgctcgctcgctca 31
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>gb|AC109600.2| Homo sapiens chromosome 16 clone RP11-7O14, complete sequence
          Length = 142464

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    tatactacatgcattgctta 84
             ||||||||||||||||||||
Sbjct: 94128 tatactacatgcattgctta 94147
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>gb|AC023823.7| Homo sapiens chromosome 16 clone RP11-163K4, complete sequence
          Length = 155180

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    tatactacatgcattgctta 84
             ||||||||||||||||||||
Sbjct: 56174 tatactacatgcattgctta 56193
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>gb|AF390559.1|AF390559 Sphyraena idiastes cytosolic malate dehydrogenase thermostable form
            (cMDH-S) mRNA, complete cds
          Length = 1474

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 182  acacacacacgctcgctcgctcgc 205
            |||||||||| |||||||||||||
Sbjct: 1266 acacacacacactcgctcgctcgc 1243
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>emb|BX001037.13| Zebrafish DNA sequence from clone DKEY-107I16 in linkage group 6,
            complete sequence
          Length = 92347

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 166  gacaacactgaaagatacacacacacgc 193
            ||||||||||| ||| ||||||||||||
Sbjct: 9761 gacaacactgagagacacacacacacgc 9734
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 184      acacacacgctcgctcgctcgctc 207
                |||||| |||||||||||||||||
Sbjct: 10890647 acacacgcgctcgctcgctcgctc 10890670
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 354      tagtcgcggctcttgaaggggatggccctgat 385
                ||||| ||||||||||||||||| || |||||
Sbjct: 35369413 tagtcccggctcttgaaggggattgctctgat 35369382
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>gb|AF326490.1|AF326490 Zea mays plasma membrane integral protein ZmPIP1-6 mRNA, complete cds
          Length = 1325

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 365  cttgaaggggatggccctga 384
            ||||||||||||||||||||
Sbjct: 1074 cttgaaggggatggccctga 1055
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>gb|AF326488.1|AF326488 Zea mays plasma membrane integral protein ZmPIP1-4 mRNA, complete
           cds
          Length = 1153

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 362 gctcttgaaggggatggccctgat 385
           ||||||||| ||||||||||||||
Sbjct: 970 gctcttgaacgggatggccctgat 947
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>gb|AF326487.1|AF326487 Zea mays plasma membrane integral protein ZmPIP1-3 mRNA, complete
           cds
          Length = 1296

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 362 gctcttgaaggggatggccctgat 385
           ||||||||| ||||||||||||||
Sbjct: 965 gctcttgaacgggatggccctgat 942
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>ref|XM_574724.1| PREDICTED: Rattus norvegicus FK506 binding protein 5 (predicted)
           (Fkbp5_predicted), mRNA
          Length = 3571

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 189 cacgctcgctcgctcgctca 208
           ||||||||||||||||||||
Sbjct: 93  cacgctcgctcgctcgctca 74
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>gb|AC055817.12| Mus musculus, clone RP23-154I7, complete sequence
          Length = 203805

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     acgaaagagagggaaccaca 103
              ||||||||||||||||||||
Sbjct: 108423 acgaaagagagggaaccaca 108404
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>gb|AY170841.1| Axonopus compressus plasma membrane MIP protein mRNA, partial cds
          Length = 423

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 362 gctcttgaaggggatggccctgat 385
           ||||||||| ||||||||||||||
Sbjct: 414 gctcttgaacgggatggccctgat 391
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>gb|AC008080.1|AC008080 Homo sapiens clone RP11-89N17 from 7p14-15, complete sequence
          Length = 178635

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 167   acaacactgaaagatacacacaca 190
             |||| |||||||||||||||||||
Sbjct: 51257 acaaaactgaaagatacacacaca 51234
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>gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, complete sequence
          Length = 257730

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   tgaaagatacacacacacgc 193
             ||||||||||||||||||||
Sbjct: 65479 tgaaagatacacacacacgc 65460
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>dbj|AP004026.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1136_C04
          Length = 103194

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 354   tagtcgcggctcttgaaggggatggccctgat 385
             ||||| ||||||||||||||||| || |||||
Sbjct: 29961 tagtcccggctcttgaaggggattgctctgat 29930
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>gb|AY937239.1| Chlamydomonas incerta plus agglutinin (SAG1) gene, partial cds
          Length = 13081

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 180  atacacacacacgctcgctc 199
            ||||||||||||||||||||
Sbjct: 1608 atacacacacacgctcgctc 1589
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>dbj|AK102174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086K14, full
            insert sequence
          Length = 1318

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 354  tagtcgcggctcttgaaggggatggccctgat 385
            ||||| ||||||||||||||||| || |||||
Sbjct: 1017 tagtcccggctcttgaaggggattgctctgat 986
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>emb|BX255922.4| Zebrafish DNA sequence from clone CH211-125A15 in linkage group 4,
             complete sequence
          Length = 155429

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 182   acacacacacgctcgctcgctcgc 205
             |||||||||| |||||||||||||
Sbjct: 56212 acacacacacactcgctcgctcgc 56235
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>emb|BX936317.16| Zebrafish DNA sequence from clone CH211-208C9 in linkage group 20,
              complete sequence
          Length = 208051

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 182    acacacacacgctcgctcgctcgc 205
              |||||||||||| |||||||||||
Sbjct: 140703 acacacacacgcacgctcgctcgc 140680
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>emb|BX005062.4| Zebrafish DNA sequence from clone CH211-95I5 in linkage group 19,
              complete sequence
          Length = 170213

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 184    acacacacgctcgctcgctcgctc 207
              |||||||| |||||||||||||||
Sbjct: 138891 acacacacactcgctcgctcgctc 138914
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>gb|AY103580.1| Zea mays PCO072544 mRNA sequence
          Length = 1633

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 362  gctcttgaaggggatggccctgat 385
            ||||||||| ||||||||||||||
Sbjct: 1294 gctcttgaacgggatggccctgat 1271
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 184      acacacacgctcgctcgctcgctc 207
                |||||| |||||||||||||||||
Sbjct: 10969836 acacacgcgctcgctcgctcgctc 10969859
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>emb|AL714010.11| Mouse DNA sequence from clone RP23-455F14 on chromosome X, complete
              sequence
          Length = 118604

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     acgaaagagagggaaccaca 103
              ||||||||||||||||||||
Sbjct: 111772 acgaaagagagggaaccaca 111791
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>gb|U87981.1|SBU87981 Sorghum bicolor membrane intrinsic protein (Mip1) mRNA, partial cds
          Length = 539

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 362 gctcttgaaggggatggccctgat 385
           ||||||||| ||||||||||||||
Sbjct: 346 gctcttgaacgggatggccctgat 323
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>gb|U47272.1|RTU47272 Rhizobium tropici nodulation protein nodH, nodP and nodQ genes,
            complete cds
          Length = 4042

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  acacgctcgctcgctcgctc 207
            ||||||||||||||||||||
Sbjct: 1050 acacgctcgctcgctcgctc 1069
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>gb|AY879266.1| Homo sapiens flavin containing monooxygenase 1 (FMO1) gene, complete
            cds
          Length = 38506

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  tccatccattccatggctga 343
            ||||||||||||||||||||
Sbjct: 4162 tccatccattccatggctga 4181
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>dbj|AB029325.1| Oryza sativa gene for water channel protein RWC3, promoter region and
            complete cds
          Length = 5325

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 354  tagtcgcggctcttgaaggggatggccctgat 385
            ||||| ||||||||||||||||| || |||||
Sbjct: 4916 tagtcccggctcttgaaggggattgctctgat 4885
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>dbj|AB016623.1| Oryza sativa gene for RWC-3, complete cds
          Length = 1403

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 354 tagtcgcggctcttgaaggggatggccctgat 385
           ||||| ||||||||||||||||| || |||||
Sbjct: 995 tagtcccggctcttgaaggggattgctctgat 964


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,724,160
Number of Sequences: 3902068
Number of extensions: 3724160
Number of successful extensions: 71269
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70999
Number of HSP's gapped (non-prelim): 266
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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