ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HCYA_OCTDO (P12659) Hemocyanin A-type, units Ode to Odg (Fragment) 28 7.3
2HCYG_OCTDO (O61363) Hemocyanin G-type, units Oda to Odg 28 7.3
3VU4_HHV7J (P52521) U4 protein 27 9.5

>HCYA_OCTDO (P12659) Hemocyanin A-type, units Ode to Odg (Fragment)|
          Length = 1233

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 72  LLQVTDYCDSYSELTVERNKLHTSMNDHQK 161
           +L+  DYCD   +  V  N +H  +  HQK
Sbjct: 582 MLEQEDYCDFEVQFEVVHNSIHYLVGGHQK 611



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>HCYG_OCTDO (O61363) Hemocyanin G-type, units Oda to Odg|
          Length = 2896

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 72   LLQVTDYCDSYSELTVERNKLHTSMNDHQK 161
            +L+  DYCD   +  V  N +H  +  HQK
Sbjct: 2245 MLEQEDYCDFEVQFEVVHNSIHYLVGGHQK 2274



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>VU4_HHV7J (P52521) U4 protein|
          Length = 542

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 146 HRCMQLVSFYCEFRVAITVVCYLKKLHL---IFHAVLIDFT 33
           HR   L+   C+ +VA+T  C+L  LHL   + H +L  FT
Sbjct: 405 HRVRALLEHLCQKKVALTCSCFL--LHLARELRHDILEGFT 443


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,609,363
Number of Sequences: 219361
Number of extensions: 947085
Number of successful extensions: 2087
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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