Clone Name | rbart60f06 |
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Clone Library Name | barley_pub |
>gb|U87163.1|TAU87163 Triticum aestivum eIF-2 beta subunit mRNA, complete cds Length = 1154 Score = 307 bits (155), Expect = 1e-80 Identities = 164/167 (98%) Strand = Plus / Minus Query: 176 ttaagttccagccttccgacgcccaacttgcgccacaaatccagccttgataggagcaac 235 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 928 ttaagttccagccttccgacgcccaacttgcgccacgaatccagccttgataggagcaac 869 Query: 236 tgaccttgacgaaccacattgttcacaacgaaggaagaacaaccgattctccttggaaag 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 868 tgaccttgacgaaccacattgttcacaacgaaggaagaacaaccgattctccttggaaag 809 Query: 296 gatggtatctgggctcttacatccattacatatgacatattcattga 342 |||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 808 gatggtatctgggctcttgcatccatgacatatgacatattcattga 762 Score = 125 bits (63), Expect = 1e-25 Identities = 100/111 (90%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 63 attcatagtacacgaaataacaaaaaccacaaggcggtctaggcacagtataagctggac 122 |||||||||||| ||| |||||||| |||||| |||||||||||||||| || | |||| Sbjct: 1057 attcatagtacaggaagtaacaaaatccacaaagcggtctaggcacagtgaaaacaggac 998 Query: 123 aataaagattgtttgtaaatcggcaaattgttggattacgttgacagagca 173 ||||||||||| |||||||||||||||||| ||||||||||||| |||||| Sbjct: 997 aataaagattg-ttgtaaatcggcaaattgctggattacgttgatagagca 948 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 8 aaacttagatcctctgagataaatagaaattca 40 |||||| |||||||||||||||||||||||||| Sbjct: 1100 aaacttggatcctctgagataaatagaaattca 1068
>dbj|AK073228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023N08, full insert sequence Length = 1221 Score = 190 bits (96), Expect = 2e-45 Identities = 150/168 (89%) Strand = Plus / Minus Query: 175 cttaagttccagccttccgacgcccaacttgcgccacaaatccagccttgataggagcaa 234 |||| ||||||||||||||||| |||||||| || || |||||||||||||||||||||| Sbjct: 1022 cttaggttccagccttccgacgaccaacttgggcaacgaatccagccttgataggagcaa 963 Query: 235 ctgaccttgacgaaccacattgttcacaacgaaggaagaacaaccgattctccttggaaa 294 | || ||||| |||||||| ||||| ||||||||||||||||||| ||||||||| |||| Sbjct: 962 cagatcttgaagaaccacactgttcgcaacgaaggaagaacaacctattctccttagaaa 903 Query: 295 ggatggtatctgggctcttacatccattacatatgacatattcattga 342 |||||||||| || ||||| || ||||| ||||||||||| ||||||| Sbjct: 902 ggatggtatcaggactcttgcacccattgcatatgacatactcattga 855
>gb|AY103698.1| Zea mays PCO083605 mRNA sequence Length = 1319 Score = 123 bits (62), Expect = 4e-25 Identities = 137/162 (84%) Strand = Plus / Minus Query: 186 gccttccgacgcccaacttgcgccacaaatccagccttgataggagcaactgaccttgac 245 ||||||||||| || ||||| || || |||||||| ||||| |||||||| |||||||| Sbjct: 911 gccttccgacgaccgacttgagcaacgaatccagctttgattggagcaacggaccttgaa 852 Query: 246 gaaccacattgttcacaacgaaggaagaacaaccgattctccttggaaaggatggtatct 305 || ||||| ||||| || ||||||||||||| ||||| |||||||| || |||||||| Sbjct: 851 gatccacactgttcgcagcgaaggaagaacagacgattttccttggacagaatggtatca 792 Query: 306 gggctcttacatccattacatatgacatattcattgaagtat 347 |||||||| |||||||| || ||||| || ||||||| |||| Sbjct: 791 gggctcttgcatccattgcagatgacgtactcattgatgtat 750
>ref|XM_479549.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1271 Score = 121 bits (61), Expect = 2e-24 Identities = 133/157 (84%) Strand = Plus / Minus Query: 186 gccttccgacgcccaacttgcgccacaaatccagccttgataggagcaactgaccttgac 245 |||||||| || |||||||| || ||||||||||||||||| |||||||| ||||| ||| Sbjct: 983 gccttccgccgaccaacttgtgcgacaaatccagccttgattggagcaacagacctcgac 924 Query: 246 gaaccacattgttcacaacgaaggaagaacaaccgattctccttggaaaggatggtatct 305 || ||||| ||||| || ||||||||||||| ||||| |||||||| || |||||||| Sbjct: 923 gatccacactgttcgcagcgaaggaagaacagacgattttccttggatagaatggtatca 864 Query: 306 gggctcttacatccattacatatgacatattcattga 342 ||||| || || ||||| || ||||| || ||||||| Sbjct: 863 gggcttttgcaaccattgcaaatgacgtactcattga 827
>dbj|AK066982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093I07, full insert sequence Length = 1270 Score = 121 bits (61), Expect = 2e-24 Identities = 133/157 (84%) Strand = Plus / Minus Query: 186 gccttccgacgcccaacttgcgccacaaatccagccttgataggagcaactgaccttgac 245 |||||||| || |||||||| || ||||||||||||||||| |||||||| ||||| ||| Sbjct: 982 gccttccgccgaccaacttgtgcgacaaatccagccttgattggagcaacagacctcgac 923 Query: 246 gaaccacattgttcacaacgaaggaagaacaaccgattctccttggaaaggatggtatct 305 || ||||| ||||| || ||||||||||||| ||||| |||||||| || |||||||| Sbjct: 922 gatccacactgttcgcagcgaaggaagaacagacgattttccttggatagaatggtatca 863 Query: 306 gggctcttacatccattacatatgacatattcattga 342 ||||| || || ||||| || ||||| || ||||||| Sbjct: 862 gggcttttgcaaccattgcaaatgacgtactcattga 826
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 255 tgttcacaacgaaggaagaacaaccgattctccttggaaaggatggtatctgggctctta 314 ||||| ||||||||||||||||||| ||||||||| |||||||||||||| || ||||| Sbjct: 12292173 tgttcgcaacgaaggaagaacaacctattctccttagaaaggatggtatcaggactcttg 12292114 Query: 315 catccattacatatgacatattcat 339 || ||||| ||||||||||| |||| Sbjct: 12292113 cacccattgcatatgacatactcat 12292089 Score = 93.7 bits (47), Expect = 4e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 175 cttaagttccagccttccgacgcccaacttgcgccacaaatccagccttgataggagcaa 234 |||| ||||||||||||||||| |||||||| || || |||||||||||||||||||||| Sbjct: 12293602 cttaggttccagccttccgacgaccaacttgggcaacgaatccagccttgataggagcaa 12293543 Query: 235 ctgaccttgacgaaccaca 253 | || ||||| |||||||| Sbjct: 12293542 cagatcttgaagaaccaca 12293524
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 255 tgttcacaacgaaggaagaacaaccgattctccttggaaaggatggtatctgggctctta 314 ||||| ||||||||||||||||||| ||||||||| |||||||||||||| || ||||| Sbjct: 12288936 tgttcgcaacgaaggaagaacaacctattctccttagaaaggatggtatcaggactcttg 12288877 Query: 315 catccattacatatgacatattcat 339 || ||||| ||||||||||| |||| Sbjct: 12288876 cacccattgcatatgacatactcat 12288852 Score = 93.7 bits (47), Expect = 4e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 175 cttaagttccagccttccgacgcccaacttgcgccacaaatccagccttgataggagcaa 234 |||| ||||||||||||||||| |||||||| || || |||||||||||||||||||||| Sbjct: 12290365 cttaggttccagccttccgacgaccaacttgggcaacgaatccagccttgataggagcaa 12290306 Query: 235 ctgaccttgacgaaccaca 253 | || ||||| |||||||| Sbjct: 12290305 cagatcttgaagaaccaca 12290287
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 255 tgttcacaacgaaggaagaacaaccgattctccttggaaaggatggtatctgggctctta 314 ||||| ||||||||||||||||||| ||||||||| |||||||||||||| || ||||| Sbjct: 61706 tgttcgcaacgaaggaagaacaacctattctccttagaaaggatggtatcaggactcttg 61647 Query: 315 catccattacatatgacatattcat 339 || ||||| ||||||||||| |||| Sbjct: 61646 cacccattgcatatgacatactcat 61622 Score = 93.7 bits (47), Expect = 4e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 175 cttaagttccagccttccgacgcccaacttgcgccacaaatccagccttgataggagcaa 234 |||| ||||||||||||||||| |||||||| || || |||||||||||||||||||||| Sbjct: 63135 cttaggttccagccttccgacgaccaacttgggcaacgaatccagccttgataggagcaa 63076 Query: 235 ctgaccttgacgaaccaca 253 | || ||||| |||||||| Sbjct: 63075 cagatcttgaagaaccaca 63057
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 71.9 bits (36), Expect = 1e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 186 gccttccgacgcccaacttgcgccacaaatccagccttgataggagcaactgaccttgac 245 |||||||| || |||||||| || ||||||||||||||||| |||||||| ||||| ||| Sbjct: 28806166 gccttccgccgaccaacttgtgcgacaaatccagccttgattggagcaacagacctcgac 28806225 Query: 246 gaaccaca 253 || ||||| Sbjct: 28806226 gatccaca 28806233 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Plus Query: 255 tgttcacaacgaaggaagaacaaccgattctccttggaaaggatggtatctgggctctta 314 ||||| || ||||||||||||| ||||| |||||||| || |||||||| ||||| || Sbjct: 28807073 tgttcgcagcgaaggaagaacagacgattttccttggatagaatggtatcagggcttttg 28807132 Query: 315 catccattacatatgac 331 || ||||| || ||||| Sbjct: 28807133 caaccattgcaaatgac 28807149
>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0008J01 Length = 159900 Score = 71.9 bits (36), Expect = 1e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 186 gccttccgacgcccaacttgcgccacaaatccagccttgataggagcaactgaccttgac 245 |||||||| || |||||||| || ||||||||||||||||| |||||||| ||||| ||| Sbjct: 63852 gccttccgccgaccaacttgtgcgacaaatccagccttgattggagcaacagacctcgac 63911 Query: 246 gaaccaca 253 || ||||| Sbjct: 63912 gatccaca 63919 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Plus Query: 255 tgttcacaacgaaggaagaacaaccgattctccttggaaaggatggtatctgggctctta 314 ||||| || ||||||||||||| ||||| |||||||| || |||||||| ||||| || Sbjct: 64759 tgttcgcagcgaaggaagaacagacgattttccttggatagaatggtatcagggcttttg 64818 Query: 315 catccattacatatgac 331 || ||||| || ||||| Sbjct: 64819 caaccattgcaaatgac 64835
>gb|DQ284468.1| Solanum tuberosum clone 109D01 eukaryotic translation initiation factor 2 beta subunit-like mRNA, complete cds Length = 1033 Score = 63.9 bits (32), Expect = 3e-07 Identities = 128/160 (80%) Strand = Plus / Minus Query: 183 ccagccttccgacgcccaacttgcgccacaaatccagccttgataggagcaactgacctt 242 ||||| |||||||| ||||| | || || || ||||| ||||||||||||||||| ||| Sbjct: 862 ccagctttccgacgtccaacacgagcaacgaaaccagctttgataggagcaactgatctt 803 Query: 243 gacgaaccacattgttcacaacgaaggaagaacaaccgattctccttggaaaggatggta 302 || ||||| | ||||| || |||||||| | || ||||| || |||||||| ||| Sbjct: 802 ccagagccacacttctcacatcggaggaagaaaagacggttctcttttgaaaggatagta 743 Query: 303 tctgggctcttacatccattacatatgacatattcattga 342 ||||| || ||||| ||||| || |||||||| ||||||| Sbjct: 742 tctggacttttacagccattgcaaatgacatactcattga 703
>gb|AC141923.27| Medicago truncatula clone mth2-7f19, complete sequence Length = 116685 Score = 44.1 bits (22), Expect = 0.29 Identities = 49/58 (84%) Strand = Plus / Plus Query: 282 ttctccttggaaaggatggtatctgggctcttacatccattacatatgacatattcat 339 |||||||| ||||| | || ||||| ||||| |||||| |||| ||||||||||||| Sbjct: 89007 ttctcctttgaaagtaatgtgtctggactcttgcatccaatacaaatgacatattcat 89064
>gb|AC006004.2| Homo sapiens PAC clone RP4-803F10 from 7, complete sequence Length = 103530 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 gaaataacaaaaaccacaagg 96 ||||||||||||||||||||| Sbjct: 89915 gaaataacaaaaaccacaagg 89935
>gb|AC146207.3| Pan troglodytes BAC clone RP43-25M19 from 7, complete sequence Length = 179594 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 gaaataacaaaaaccacaagg 96 ||||||||||||||||||||| Sbjct: 67829 gaaataacaaaaaccacaagg 67849
>ref|NM_203088.1| Arabidopsis thaliana EIF2 BETA AT5G20920 (EIF2 BETA) transcript variant AT5G20920.2 mRNA, complete cds Length = 1151 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 282 ttctccttggaaaggatggtatctgggctctt 313 ||||||||||| || ||||| ||||||||||| Sbjct: 776 ttctccttggagagaatggtgtctgggctctt 745
>ref|NM_122100.2| Arabidopsis thaliana EIF2 BETA AT5G20920 (EIF2 BETA) transcript variant AT5G20920.1 mRNA, complete cds Length = 1194 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 282 ttctccttggaaaggatggtatctgggctctt 313 ||||||||||| || ||||| ||||||||||| Sbjct: 819 ttctccttggagagaatggtgtctgggctctt 788
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 acgaaggaagaacaaccgat 282 |||||||||||||||||||| Sbjct: 2123439 acgaaggaagaacaaccgat 2123458
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 acgaaggaagaacaaccgat 282 |||||||||||||||||||| Sbjct: 2103912 acgaaggaagaacaaccgat 2103931
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 acgaaggaagaacaaccgat 282 |||||||||||||||||||| Sbjct: 2103816 acgaaggaagaacaaccgat 2103835
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 acgaaggaagaacaaccgat 282 |||||||||||||||||||| Sbjct: 2158814 acgaaggaagaacaaccgat 2158833
>gb|BT000056.1| Arabidopsis thaliana translation initiation factor eIF-2 beta chain-like protein (At5g20920) mRNA, complete cds Length = 844 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 282 ttctccttggaaaggatggtatctgggctctt 313 ||||||||||| || ||||| ||||||||||| Sbjct: 707 ttctccttggagagaatggtgtctgggctctt 676
>emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in linkage group 4, complete sequence Length = 150030 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 taaatcggcaaattgttgga 157 |||||||||||||||||||| Sbjct: 140428 taaatcggcaaattgttgga 140409
>gb|AY128324.1| Arabidopsis thaliana translation initiation factor eIF-2 beta chain-like protein (At5g20920) mRNA, complete cds Length = 1095 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 282 ttctccttggaaaggatggtatctgggctctt 313 ||||||||||| || ||||| ||||||||||| Sbjct: 778 ttctccttggagagaatggtgtctgggctctt 747
>gb|AF353095.1|AF353095 Arabidopsis thaliana protein synthesis initiation factor eIF2 beta mRNA, complete cds Length = 1160 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 282 ttctccttggaaaggatggtatctgggctctt 313 ||||||||||| || ||||| ||||||||||| Sbjct: 805 ttctccttggagagaatggtgtctgggctctt 774
>gb|AC084239.1|AC084239 Homo sapiens chromosome 19, BAC CTC-512J12 (BC347040), complete sequence Length = 176928 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 agaaaacttagatcctctga 24 |||||||||||||||||||| Sbjct: 29084 agaaaacttagatcctctga 29065
>gb|AC138473.1| Homo sapiens chromosome 19 clone CTC-512J12, complete sequence Length = 176918 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 agaaaacttagatcctctga 24 |||||||||||||||||||| Sbjct: 29082 agaaaacttagatcctctga 29063
>gb|AY087810.1| Arabidopsis thaliana clone 3855 mRNA, complete sequence Length = 1134 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 282 ttctccttggaaaggatggtatctgggctctt 313 ||||||||||| || ||||| ||||||||||| Sbjct: 818 ttctccttggagagaatggtgtctgggctctt 787
>gb|AF296834.1|F22D1 Arabidopsis thaliana BAC F22D1 Length = 96102 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 282 ttctccttggaaaggatggtatctgggctctt 313 ||||||||||| || ||||| ||||||||||| Sbjct: 38935 ttctccttggagagaatggtgtctgggctctt 38966
>emb|CT025718.7| Zebrafish DNA sequence from clone CH73-129N6 in linkage group 4, complete sequence Length = 65440 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 taaatcggcaaattgttgga 157 |||||||||||||||||||| Sbjct: 44253 taaatcggcaaattgttgga 44272
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 acgaaggaagaacaaccgat 282 |||||||||||||||||||| Sbjct: 2103788 acgaaggaagaacaaccgat 2103807 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,925,146 Number of Sequences: 3902068 Number of extensions: 2925146 Number of successful extensions: 56086 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55901 Number of HSP's gapped (non-prelim): 184 length of query: 347 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 325 effective length of database: 17,147,199,772 effective search space: 5572839925900 effective search space used: 5572839925900 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)