ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YGI5_SCHPO (Q9Y7K7) Hypothetical protein C2A9.05c in chromosome II 28 4.2
2PNCB_RHIME (Q92S49) Nicotinate phosphoribosyltransferase (EC 2.4... 28 7.2
3PUR8_YEAST (Q05911) Adenylosuccinate lyase (EC 4.3.2.2) (Adenylo... 27 9.4

>YGI5_SCHPO (Q9Y7K7) Hypothetical protein C2A9.05c in chromosome II|
          Length = 219

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
 Frame = +2

Query: 23  FIDKATTTRK*QCRSTEAAGKPSENFTSLDKEFYLHQQP----------PGV*VCLLAAT 172
           ++D   T  K   ++TE   +   N + L + F +   P           G  V  +   
Sbjct: 10  YVDNHITLTKMDYQNTETIAEQERNASRLPQMFQMSSHPVALFFFLLFRTGAIVAYILGM 69

Query: 173 FFTSTHSLLFI 205
           FFTS+  LLFI
Sbjct: 70  FFTSSFMLLFI 80



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>PNCB_RHIME (Q92S49) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)|
           (NAPRTase)
          Length = 434

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 108 RLVKFSEGFPAASVDR-HCHFRVVVALSMKWGESL 7
           +L+ FS+G    ++ R +CHF   V +S  WG +L
Sbjct: 332 KLLIFSDGLDVDTIIRTYCHFEGRVRMSFGWGTNL 366



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>PUR8_YEAST (Q05911) Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)|
           (ASL) (ASASE)
          Length = 482

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 72  RQRENPLKISQV*TKSFIYTNNPREFEFVCSL 167
           ++ E P + SQ+ + +  Y  NP   E VCSL
Sbjct: 273 KEVEEPFEKSQIGSSAMAYKRNPMRCERVCSL 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,553,428
Number of Sequences: 219361
Number of extensions: 721158
Number of successful extensions: 1494
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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