ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRFAB_BACSU (Q04747) Surfactin synthetase subunit 2 30 1.6
2KIN20_CAEEL (Q20471) Casein kinase I isoform delta (EC 2.7.11.1)... 30 1.6
3MASS1_BRARE (Q6JAN0) Monogenic audiogenic seizure susceptibility... 28 5.9
4HIS63_VIBVY (Q7MPK7) Putative imidazole glycerol phosphate synth... 28 7.7

>SRFAB_BACSU (Q04747) Surfactin synthetase subunit 2|
          Length = 3587

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 156  QKFKEFVPLSVIERAPSIRGCLNQTVAFRHLILMDV 49
            QK KEF+    +  AP IR  L +  A +HL+L+D+
Sbjct: 2189 QKIKEFIRPFDLNDAPLIRAALLRIEAKKHLLLLDM 2224



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>KIN20_CAEEL (Q20471) Casein kinase I isoform delta (EC 2.7.11.1) (Protein|
           kinase 20)
          Length = 497

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 10/29 (34%), Positives = 24/29 (82%)
 Frame = +2

Query: 20  IGEHIKTNKQTSIKIKCLKATV*FKHPRM 106
           +G++I+TN++ ++K++C+K+    KHP++
Sbjct: 207 LGQNIQTNEEVAVKLECVKS----KHPQL 231



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>MASS1_BRARE (Q6JAN0) Monogenic audiogenic seizure susceptibility protein 1|
            homolog precursor (Very large G-protein coupled receptor
            1)
          Length = 6199

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 137  TNSLNFCGPYCIRMRQGQATPTERSPELWCYY 232
            TN LNFC  +C+R R  QA     +    C++
Sbjct: 2418 TNVLNFCAAFCLRERACQAFSFTNTTTPSCFW 2449



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>HIS63_VIBVY (Q7MPK7) Putative imidazole glycerol phosphate synthase subunit|
           hisF3 (EC 4.1.3.-) (IGP synthase cyclase subunit) (IGP
           synthase subunit hisF3) (ImGP synthase subunit hisF3)
           (IGPS subunit hisF3)
          Length = 260

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 295 SSEEPKKLQSLSIIASRPWHSVITPQLGRPFSRCRLPLSHSDAIRAAE 152
           + +E  +L  L I ASR  H      + R  S CR+PL +   I+  E
Sbjct: 45  NEQEADELTLLDIDASRLGHEPDYVLIERIASECRMPLCYGGGIKTVE 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,107,623
Number of Sequences: 219361
Number of extensions: 809818
Number of successful extensions: 1892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1892
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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