ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC120867.10| Mus musculus chromosome 5, clone RP23-91O14, com... 40 2.8
2gb|AF026204.1| Caenorhabditis elegans cosmid C30E1, complete seq... 40 2.8
3gb|AC087421.2| Felis catus clone RP86-177C24, complete sequence 40 2.8
4gb|AC087807.2| Felis catus clone RP86-294B21, complete sequence 40 2.8
5gb|AC154402.2| Mus musculus BAC clone RP24-235N24 from chromosom... 40 2.8
6emb|AL451084.19| Human DNA sequence from clone RP11-357H24 on ch... 40 2.8
7emb|AL133289.9| Human DNA sequence from clone RP4-804P4 on chrom... 40 2.8
8emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 40 2.8
9ref|NM_078336.1| Caenorhabditis elegans C30E1.8 (C30E1.8) mRNA, ... 40 2.8
10dbj|AB025630.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 2.8
11emb|CT009762.8| Mouse DNA sequence from clone RP23-211O9 on chro... 40 2.8
12dbj|AB028740.1| Mus musculus drba gene for drebrin A, partial cds 40 2.8

>gb|AC120867.10| Mus musculus chromosome 5, clone RP23-91O14, complete sequence
          Length = 202878

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   tatgcacaagatcacaaaca 208
             ||||||||||||||||||||
Sbjct: 38544 tatgcacaagatcacaaaca 38525



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>gb|AF026204.1| Caenorhabditis elegans cosmid C30E1, complete sequence
          Length = 21698

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 70   gtgaactagtaatatacatg 89
            ||||||||||||||||||||
Sbjct: 4177 gtgaactagtaatatacatg 4196



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>gb|AC087421.2| Felis catus clone RP86-177C24, complete sequence
          Length = 141881

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      ctatcaaccacaaagcacaa 26
              ||||||||||||||||||||
Sbjct: 139771 ctatcaaccacaaagcacaa 139752



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>gb|AC087807.2| Felis catus clone RP86-294B21, complete sequence
          Length = 121506

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     ctatcaaccacaaagcacaa 26
             ||||||||||||||||||||
Sbjct: 39816 ctatcaaccacaaagcacaa 39797



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>gb|AC154402.2| Mus musculus BAC clone RP24-235N24 from chromosome 13, complete sequence
          Length = 145213

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    aaatctcacagctccaagaa 135
              ||||||||||||||||||||
Sbjct: 115243 aaatctcacagctccaagaa 115262



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>emb|AL451084.19| Human DNA sequence from clone RP11-357H24 on chromosome 10 Contains the
             3' end of the TCF7L2 gene for transcription factor 7-like
             2 (T-cell specific, HMG-box), complete sequence
          Length = 183815

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tctatcaaccacaaagcaca 25
             ||||||||||||||||||||
Sbjct: 60459 tctatcaaccacaaagcaca 60478



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>emb|AL133289.9| Human DNA sequence from clone RP4-804P4 on chromosome 1q42.11-43
             Contains part of a novel gene (FLJ11383), complete
             sequence
          Length = 100515

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    caaccacaaagcacaaagcc 30
             ||||||||||||||||||||
Sbjct: 66082 caaccacaaagcacaaagcc 66101



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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 193     cacaagatcacaaacatata 212
               ||||||||||||||||||||
Sbjct: 2164117 cacaagatcacaaacatata 2164136



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>ref|NM_078336.1| Caenorhabditis elegans C30E1.8 (C30E1.8) mRNA, complete cds
          Length = 1275

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  gtgaactagtaatatacatg 89
           ||||||||||||||||||||
Sbjct: 292 gtgaactagtaatatacatg 273



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>dbj|AB025630.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPA22
          Length = 51436

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   acagctccaagaaacttatt 142
             ||||||||||||||||||||
Sbjct: 35177 acagctccaagaaacttatt 35196



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>emb|CT009762.8| Mouse DNA sequence from clone RP23-211O9 on chromosome 13, complete
             sequence
          Length = 229171

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   aaatctcacagctccaagaa 135
             ||||||||||||||||||||
Sbjct: 49691 aaatctcacagctccaagaa 49672



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>dbj|AB028740.1| Mus musculus drba gene for drebrin A, partial cds
          Length = 20387

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   aaatctcacagctccaagaa 135
             ||||||||||||||||||||
Sbjct: 11616 aaatctcacagctccaagaa 11597


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,620,662
Number of Sequences: 3902068
Number of extensions: 1620662
Number of successful extensions: 119244
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119211
Number of HSP's gapped (non-prelim): 33
length of query: 219
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 197
effective length of database: 17,147,199,772
effective search space: 3377998355084
effective search space used: 3377998355084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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