ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane ... 45 4e-05
2PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic... 43 2e-04
3PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane ... 42 5e-04
4PIP1_ATRCA (P42767) Aquaporin PIP-type 41 7e-04
5PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 40 0.002
6PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane ... 39 0.003
7PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane ... 35 0.048
8PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane ... 34 0.11
9PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane ... 33 0.14
10PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic... 33 0.18
11PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic... 33 0.18
12PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic... 33 0.18
13Q300_MOUSE (Q02722) Protein Q300 29 2.6
14FPRB_MYCTU (P65528) Probable ferredoxin/ferredoxin--NADP reducta... 29 3.4
15FPRB_MYCBO (P65529) Probable ferredoxin/ferredoxin--NADP reducta... 29 3.4
16FAD6E_ARATH (P46313) Omega-6 fatty acid desaturase, endoplasmic ... 29 3.4
17HDA3_ASHGO (Q758V8) HDA1 complex subunit 3 (Histone deacetylase ... 28 4.5
18PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane ... 28 5.9
19HEPC1_SALSA (Q801Y3) Hepcidin-1 precursor 28 5.9
20MDL1_CANAL (P97998) ATP-dependent permease MDL1 28 7.7

>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic|
           protein 2a) (PIP2a) (OsPIP2.1)
          Length = 290

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRSNA 244
           YHQYILRAGAIKALGSFRSNA
Sbjct: 270 YHQYILRAGAIKALGSFRSNA 290



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>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)|
           (Salt stress-induced major intrinsic protein)
          Length = 280

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRSNA 244
           YHQYILRA AIKALGSFRSNA
Sbjct: 258 YHQYILRASAIKALGSFRSNA 278



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>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2.6) (OsPIP2.6)
          Length = 282

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRSN 247
           YHQYILRA AIKALGSFRSN
Sbjct: 260 YHQYILRAAAIKALGSFRSN 279



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>PIP1_ATRCA (P42767) Aquaporin PIP-type|
          Length = 282

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRSN 247
           YHQY+LRA AIKALGSFRSN
Sbjct: 260 YHQYVLRAAAIKALGSFRSN 279



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRS 250
           YHQ++LRAGAIKALGSFRS
Sbjct: 264 YHQFVLRAGAIKALGSFRS 282



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>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 3b) (PIP3b)
          Length = 278

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRSN 247
           YHQYILRA AIKAL SFRSN
Sbjct: 256 YHQYILRAAAIKALASFRSN 275



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>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic|
           protein 2.4)
          Length = 291

 Score = 35.0 bits (79), Expect = 0.048
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRS 250
           YHQ+ILRA AIKALGSF S
Sbjct: 265 YHQFILRAAAIKALGSFGS 283



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>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2e) (PIP2e)
          Length = 289

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRS 250
           YHQ++LRAGA+KA GS RS
Sbjct: 264 YHQFVLRAGAMKAYGSVRS 282



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>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic|
           protein 2.2) (OsPIP2.2)
          Length = 288

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRSNA 244
           YHQY+LRA A K LGS+RSNA
Sbjct: 269 YHQYVLRASAAK-LGSYRSNA 288



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>PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic protein 2c)|
           (PIP2c) (TMP2C) (RD28-PIP) (Water stress-induced
           tonoplast intrinsic protein) (WSI-TIP)
          Length = 285

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRSNA 244
           YHQ++LRA   K+LGSFRS A
Sbjct: 263 YHQFVLRASGSKSLGSFRSAA 283



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>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)|
           (PIP2b) (TMP2b)
          Length = 285

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRSNA 244
           YHQ++LRA   K+LGSFRS A
Sbjct: 263 YHQFVLRASGSKSLGSFRSAA 283



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>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)|
           (PIP2a)
          Length = 287

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRSNA 244
           YHQ++LRA   K+LGSFRS A
Sbjct: 265 YHQFVLRASGSKSLGSFRSAA 285



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>Q300_MOUSE (Q02722) Protein Q300|
          Length = 77

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 114 YLCVGSCICVCAQSCVPCVVIRSMGSLVLITPHSFSC 4
           Y+CV  C+CVC   C    + +S G+L   +  +  C
Sbjct: 26  YVCVCVCVCVCVCVCTLTCMCKSGGNLGCSSSGAIHC 62



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>FPRB_MYCTU (P65528) Probable ferredoxin/ferredoxin--NADP reductase (EC|
           1.18.1.2) (FNR)
          Length = 575

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -2

Query: 237 VIHVMCMQD*SNGDLC---CVHPSKEKAAFATSRQ-FSWPLQWSCYLCVGSCICVCAQSC 70
           VI   C  D S    C   C+HP+ ++  FATS   +  P+  +C  C G+C+  C  S 
Sbjct: 4   VITQSCCNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVTACPVSA 60

Query: 69  V 67
           +
Sbjct: 61  I 61



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>FPRB_MYCBO (P65529) Probable ferredoxin/ferredoxin--NADP reductase (EC|
           1.18.1.2) (FNR)
          Length = 575

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -2

Query: 237 VIHVMCMQD*SNGDLC---CVHPSKEKAAFATSRQ-FSWPLQWSCYLCVGSCICVCAQSC 70
           VI   C  D S    C   C+HP+ ++  FATS   +  P+  +C  C G+C+  C  S 
Sbjct: 4   VITQSCCNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVTACPVSA 60

Query: 69  V 67
           +
Sbjct: 61  I 61



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>FAD6E_ARATH (P46313) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC|
           1.14.19.-) (Delta-12 desaturase)
          Length = 383

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 138 SWPLQWSCYLCVGSCICVCAQSC 70
           +WPL W+C  CV + I V A  C
Sbjct: 85  AWPLYWACQGCVLTGIWVIAHEC 107



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>HDA3_ASHGO (Q758V8) HDA1 complex subunit 3 (Histone deacetylase complex 1|
           subunit 3)
          Length = 637

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = -1

Query: 283 RRHQGPRLLQEQRVTSYPCDVHARLKQWRPVLCPSIQRESR----FCNFSTVQLAAAMV- 119
           RRH G  +  +Q+ T Y C  H  L         +++R++R     C   TV   A  + 
Sbjct: 158 RRHDGQSIKTKQKKTRYACTCH--LVPSEAAKAIALERDTRLGLVICVDPTVDTRAPHIQ 215

Query: 118 -VLFMCRQLHMRMCPVMRAVCCNSV 47
            +L   ++ + R  P +R    NS+
Sbjct: 216 SILAQQQRKYGRTVPTIRVAVINSI 240



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>PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane intrinsic|
           protein 2.7) (OsPIP2.7)
          Length = 290

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 306 YHQYILRAGAIKALGSFRSNA 244
           YH+ +LR  A KAL SFRS +
Sbjct: 267 YHKLVLRGEAAKALSSFRSTS 287



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>HEPC1_SALSA (Q801Y3) Hepcidin-1 precursor|
          Length = 86

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 103 RQLHMRMCPVMRAVCCNSVHGIAC 32
           RQ+H+ +C     +CCN  H I C
Sbjct: 61  RQIHLSLC----GLCCNCCHNIGC 80



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>MDL1_CANAL (P97998) ATP-dependent permease MDL1|
          Length = 685

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 127 QRPTELSRSCKSGFLFGWMDTAQVAIASILHAHHMDNSLRVAPEGAEGLDGA 282
           Q P   S + K   LFG  D     I + L+  +  N +R  P+G +   GA
Sbjct: 523 QEPLLFSGTIKENILFGKEDATDEEINNALNLSYASNFVRHLPDGLDTKIGA 574


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,843,203
Number of Sequences: 219361
Number of extensions: 864622
Number of successful extensions: 2392
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2385
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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