Clone Name | rbart60e11 |
---|---|
Clone Library Name | barley_pub |
>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA, complete cds Length = 1283 Score = 361 bits (182), Expect = 9e-97 Identities = 282/310 (90%), Gaps = 9/310 (2%) Strand = Plus / Minus Query: 6 aggaaaaggaatggggggtaattaagacaagcgatcccatggaccgaattacaacacacg 65 |||||||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1189 aggaaaagcaatgcgggctaattaagacaagcgatcccatggaccgaattacaagacacg 1130 Query: 66 gcacgcatgactgggc-acatac---gcatatgcagctgccgacacataaataacacgac 121 ||||||||||| || | || ||| |||||||||||||||||||||||| ||||||||| Sbjct: 1129 gcacgcatgaccggaccacgtactacgcatatgcagctgccgacacataa-taacacgac 1071 Query: 122 cattgcagcggcc-aactgaactgtcgagaagttgcaaaagcggctttctctttggatgg 180 |||||| |||||| ||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct: 1070 cattgcggcggccgaactgaactgtcgagaagttgcaaaagcgcatttctctctggatgg 1011 Query: 181 atggacacagcacaggtcgccattgcttcaatcttgcatgcacatcacatggat---aac 237 ||||||||| ||| |||||||||||||||| |||||||| || || |||||||| ||| Sbjct: 1010 atggacacaacacgggtcgccattgcttcagtcttgcatacagatgacatggatgataac 951 Query: 238 tcgttacgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgta 297 | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 950 ttgttacgcgttgctcctgaaggagccgagggccttgatggcgccggccctgaggatgta 891 Query: 298 ctggtggtag 307 |||||||||| Sbjct: 890 ctggtggtag 881
>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds Length = 1328 Score = 113 bits (57), Expect = 3e-22 Identities = 63/65 (96%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct: 968 acgcgttgctcctgaaggagccgagggccttgatggcgccggcccggaggatgtactggt 909 Query: 303 ggtag 307 ||||| Sbjct: 908 ggtag 904
>ref|NM_187092.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1242 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919 Query: 303 ggtag 307 ||||| Sbjct: 918 ggtag 914
>ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1257 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 980 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 921 Query: 303 ggtag 307 ||||| Sbjct: 920 ggtag 916
>ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1298 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 922 Query: 303 ggtag 307 ||||| Sbjct: 921 ggtag 917
>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence Length = 1348 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| Sbjct: 924 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactggt 865 Query: 303 ggtag 307 ||||| Sbjct: 864 ggtag 860
>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds Length = 1133 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| Sbjct: 872 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactggt 813 Query: 303 ggtag 307 ||||| Sbjct: 812 ggtag 808
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 15355852 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 15355793 Query: 303 ggtag 307 ||||| Sbjct: 15355792 ggtag 15355788 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 tacgcgttgctcctgaaggagccg 265 ||||||||||||| |||||||||| Sbjct: 15306551 tacgcgttgctccggaaggagccg 15306528
>dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA for water channel protein, partial cds Length = 880 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 |||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| Sbjct: 544 acgcgttgctcctgaaggagccgagggccttgatggggccggcccggaggatgtactggt 485 Query: 303 ggtag 307 ||||| Sbjct: 484 ggtag 480
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_A06 Length = 111673 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 62851 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 62792 Query: 303 ggtag 307 ||||| Sbjct: 62791 ggtag 62787 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 tacgcgttgctcctgaaggagccg 265 ||||||||||||| |||||||||| Sbjct: 13550 tacgcgttgctccggaaggagccg 13527
>dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H04, full insert sequence Length = 1216 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919 Query: 303 ggtag 307 ||||| Sbjct: 918 ggtag 914
>dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G02, full insert sequence Length = 1451 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 572 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 513 Query: 303 ggtag 307 ||||| Sbjct: 512 ggtag 508
>dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B05, full insert sequence Length = 1242 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919 Query: 303 ggtag 307 ||||| Sbjct: 918 ggtag 914
>dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K12, full insert sequence Length = 1298 Score = 105 bits (53), Expect = 8e-20 Identities = 62/65 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 922 Query: 303 ggtag 307 ||||| Sbjct: 921 ggtag 917
>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete cds Length = 1268 Score = 97.6 bits (49), Expect = 2e-17 Identities = 61/65 (93%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 ||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||| Sbjct: 996 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactggt 937 Query: 303 ggtag 307 ||||| Sbjct: 936 ggtag 932
>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete cds Length = 1171 Score = 97.6 bits (49), Expect = 2e-17 Identities = 61/65 (93%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 ||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||| Sbjct: 943 acgcgttgctcctgaaggagccgagggccttgatggccccagcccggaggatgtactggt 884 Query: 303 ggtag 307 ||||| Sbjct: 883 ggtag 879
>dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G03, full insert sequence Length = 1257 Score = 97.6 bits (49), Expect = 2e-17 Identities = 61/65 (93%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 ||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 980 acgcgttgctcctgagggagccgagggctttgatggcgccggcccggaggatgtactggt 921 Query: 303 ggtag 307 ||||| Sbjct: 920 ggtag 916
>gb|AY109332.1| Zea mays CL502_5 mRNA sequence Length = 1969 Score = 97.6 bits (49), Expect = 2e-17 Identities = 61/65 (93%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 302 ||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||| Sbjct: 1646 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactggt 1587 Query: 303 ggtag 307 ||||| Sbjct: 1586 ggtag 1582
>ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Minus Query: 247 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 303 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 837 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 781
>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06, complete sequence Length = 127420 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Plus Query: 247 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 303 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 91012 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 91068
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Plus Query: 247 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 303 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 8906703 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 8906759
>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full insert sequence Length = 1308 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Minus Query: 247 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 303 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 936 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 880
>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full insert sequence Length = 1309 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Minus Query: 247 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 303 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 930 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 874
>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full insert sequence Length = 1296 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Minus Query: 247 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 303 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 924 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 868
>gb|AY903443.1| Astragalus membranaceus clone AM79 putative plasma membrane intrinsic protein mRNA, complete cds Length = 1120 Score = 48.1 bits (24), Expect = 0.017 Identities = 30/32 (93%) Strand = Plus / Minus Query: 248 ttgctcctgaaggagccgagggccttgatggc 279 |||||||||||||| ||||| ||||||||||| Sbjct: 839 ttgctcctgaaggatccgagagccttgatggc 808
>dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B01, full insert sequence Length = 1067 Score = 46.1 bits (23), Expect = 0.065 Identities = 47/55 (85%) Strand = Plus / Minus Query: 249 tgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 303 |||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 821 tgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 767
>ref|NM_187081.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1215 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 tacgcgttgctcctgaaggagccg 265 ||||||||||||| |||||||||| Sbjct: 954 tacgcgttgctccggaaggagccg 931
>emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on chromosome 11 Contains the 3' end of the Ulk2 gene for Unc-51 like kinase 2 (C. elegans), the Prpsap2 gene for phosphoribosyl pyrophosphate synthetase-associated protein 2, the gene for a novel sodium/glucose cotransporter protein, the gene for a novel protein (2310040C09Rik), the Grap gene for GRB2-related adaptor protein and a CpG island, complete sequence Length = 186359 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tttctctttggatggatgga 185 |||||||||||||||||||| Sbjct: 79799 tttctctttggatggatgga 79818
>gb|AF154641.1| Nicotiana tabacum clone PR16 mRNA sequence Length = 1100 Score = 40.1 bits (20), Expect = 4.0 Identities = 50/60 (83%) Strand = Plus / Minus Query: 248 ttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtggtag 307 |||||||||||||| || || || |||||||| || || | ||| ||| ||||||||||| Sbjct: 900 ttgctcctgaaggaaccaagagctttgatggcaccagcacggaggatgaactggtggtag 841
>dbj|AP004668.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0475E07 Length = 139961 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 tacgcgttgctcctgaaggagccg 265 ||||||||||||| |||||||||| Sbjct: 92564 tacgcgttgctccggaaggagccg 92541
>dbj|AK072632.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132K03, full insert sequence Length = 1215 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 tacgcgttgctcctgaaggagccg 265 ||||||||||||| |||||||||| Sbjct: 954 tacgcgttgctccggaaggagccg 931
>emb|AL844210.7| Mouse DNA sequence from clone RP23-235I13 on chromosome X, complete sequence Length = 140246 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ggaaaaggaatggggggtaa 26 |||||||||||||||||||| Sbjct: 119991 ggaaaaggaatggggggtaa 119972 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,653,440 Number of Sequences: 3902068 Number of extensions: 2653440 Number of successful extensions: 42413 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42341 Number of HSP's gapped (non-prelim): 69 length of query: 307 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 285 effective length of database: 17,147,199,772 effective search space: 4886951935020 effective search space used: 4886951935020 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)