ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FAL1_YARLI (Q6C347) ATP-dependent RNA helicase FAL1 (EC 3.6.1.-) 30 1.9
2IAA5_ARATH (P33078) Auxin-responsive protein IAA5 (Indoleacetic ... 29 3.3

>FAL1_YARLI (Q6C347) ATP-dependent RNA helicase FAL1 (EC 3.6.1.-)|
          Length = 397

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 148 VAGTPPLCVQEKKEATDRTKNSKLVVSDQSNRRL 249
           V+GTP  C+   K+   RTKN K+++ D+++  L
Sbjct: 146 VSGTPGRCLDMIKKGCLRTKNLKMLILDEADELL 179



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>IAA5_ARATH (P33078) Auxin-responsive protein IAA5 (Indoleacetic acid-induced|
           protein 5) (Auxin-induced protein AUX2-27)
          Length = 163

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 148 VAGTPPLCVQEKKEATDRTKNSKLVVS 228
           V G PP+C   +K + +RTK+S + VS
Sbjct: 54  VVGWPPVCSYRRKNSLERTKSSYVKVS 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,121,705
Number of Sequences: 219361
Number of extensions: 573624
Number of successful extensions: 1028
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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