Clone Name | rbart60e10 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | FAL1_YARLI (Q6C347) ATP-dependent RNA helicase FAL1 (EC 3.6.1.-) | 30 | 1.9 | 2 | IAA5_ARATH (P33078) Auxin-responsive protein IAA5 (Indoleacetic ... | 29 | 3.3 |
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>FAL1_YARLI (Q6C347) ATP-dependent RNA helicase FAL1 (EC 3.6.1.-)| Length = 397 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 148 VAGTPPLCVQEKKEATDRTKNSKLVVSDQSNRRL 249 V+GTP C+ K+ RTKN K+++ D+++ L Sbjct: 146 VSGTPGRCLDMIKKGCLRTKNLKMLILDEADELL 179
>IAA5_ARATH (P33078) Auxin-responsive protein IAA5 (Indoleacetic acid-induced| protein 5) (Auxin-induced protein AUX2-27) Length = 163 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 148 VAGTPPLCVQEKKEATDRTKNSKLVVS 228 V G PP+C +K + +RTK+S + VS Sbjct: 54 VVGWPPVCSYRRKNSLERTKSSYVKVS 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,121,705 Number of Sequences: 219361 Number of extensions: 573624 Number of successful extensions: 1028 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1019 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1028 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)