Clone Name | rbart60e10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB088410.1| Triticum aestivum 1-FFT-B mRNA for fructan:fructan 1-fructosyltransferase, complete cds Length = 2251 Score = 264 bits (133), Expect = 2e-67 Identities = 278/323 (86%), Gaps = 10/323 (3%) Strand = Plus / Minus Query: 32 atccacgcccttttaattcaaccataattgatttacaagtgacgaacatcatctaattca 91 ||||| |||||||||||| | || ||||||||||||| ||||| |||||||||||||||| Sbjct: 2198 atccatgcccttttaatttacccgtaattgatttacaggtgaccaacatcatctaattca 2139 Query: 92 tcttactaaaaccaaaactagaacaaggaacataaatcaagatgataggtagatgagtgg 151 |||||||||||||||||| |||| | ||||||||||||||||| ||||||| | | Sbjct: 2138 tcttactaaaaccaaaaccggaaccaaaaacataaatcaagatgacaggtagac---ttg 2082 Query: 152 ctggtactccaccacta----tgtgtccaagagaaaaaggaagcaaca--gaccgaacaa 205 ||||| ||||||| ||| | ||||||||| |||| |||||| || |||||| ||| Sbjct: 2081 ctggtgctccaccgctaaaaatctgtccaagataaaa-ggaagctccacggaccgagcaa 2023 Query: 206 aaaattcaaaacttgttgtaagtgatcagtctaatcgacgattaccaagtcgtcgtctgt 265 ||||| || |||||||||||||||||||||||||||| || |||||||||| |||| || Sbjct: 2022 aaaatccattacttgttgtaagtgatcagtctaatcgaggactaccaagtcggcgtccgt 1963 Query: 266 gaatatctggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacggc 325 ||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||| || Sbjct: 1962 gaatatccggttgtacgacgaatccatgtcgtgcacaatgagcttctcagcggtgatggt 1903 Query: 326 agcgctggtggcattgttgaaca 348 |||||||||||||||||||||| Sbjct: 1902 ggcgctggtggcattgttgaaca 1880
>dbj|AB088409.1| Triticum aestivum 1-FFT-A mRNA for fructan:fructan 1-fructosyltransferase, complete cds Length = 2304 Score = 248 bits (125), Expect = 1e-62 Identities = 276/323 (85%), Gaps = 10/323 (3%) Strand = Plus / Minus Query: 32 atccacgcccttttaattcaaccataattgatttacaagtgacgaacatcatctaattca 91 ||||| |||||||||||||| || || ||||||||||||||| |||||||||||||||| Sbjct: 2237 atccatgcccttttaattcacccgcaactgatttacaagtgaccaacatcatctaattca 2178 Query: 92 tcttactaaaaccaaaactagaacaaggaacataaatcaagatgataggtagatgagtgg 151 |||||||||||||||||| || || |||||||||||||||||||||||||| || | | Sbjct: 2177 tcttactaaaaccaaaaccaggaccaggaacataaatcaagatgataggta---gactag 2121 Query: 152 ctggtactccaccact---atgtgtccaagagaaaaaggaagcaacagaccgaacaaaaa 208 ||||| ||| |||||| | |||||||||| |||||||||| || |||||| |||| | Sbjct: 2120 ctggtgctcgaccactgtcgtctgtccaagag-aaaaggaagccaccgaccgagcaaaca 2062 Query: 209 attcaaaacttgttgtaag---tgatcagtctaatcgacgattaccaagtcgtcgtctgt 265 | || ||||| |||||| |||| ||||||||| | || || |||||| |||||||| Sbjct: 2061 gtccataacttactgtaagtgatgattagtctaatcaaggactaacaagtcttcgtctgt 2002 Query: 266 gaatatctggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacggc 325 ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct: 2001 gaatatccggttgtacgacgaatccatgtcgtgcacgacgagcttctcagcggtgatgct 1942 Query: 326 agcgctggtggcattgttgaaca 348 |||| ||||||||||||||||| Sbjct: 1941 ggcgccggtggcattgttgaaca 1919
>dbj|AB029888.1| Triticum aestivum 1-SST mRNA for sucrose:sucrose 1-fructosytransferase, complete cds Length = 2330 Score = 170 bits (86), Expect = 2e-39 Identities = 231/275 (84%), Gaps = 7/275 (2%) Strand = Plus / Minus Query: 76 aacatcatctaattcatcttactaaaaccaaaactagaacaaggaacataaatcaagatg 135 |||| ||||||||||||||||||||| | ||||| ||||| | ||||| |||| ||| || Sbjct: 2201 aacaccatctaattcatcttactaaaccaaaaaccagaacgaagaacaaaaatgaag-tg 2143 Query: 136 ataggtagatgagtggctggtactccaccactatgtgtccaagagaaaaaggaagcaaca 195 ||||| ||| || ||| |||||||| | | | |||||||||||||| |||||| || Sbjct: 2142 ataggcaga---gtcgctagtactccatctccaactgtccaagagaaaa-ggaagccacc 2087 Query: 196 gaccga--acaaaaaattcaaaacttgttgtaagtgatcagtctaatcgacgattaccaa 253 |||||| |||| || || |||||||||||||||||||||||||||||||| |||||| Sbjct: 2086 gaccgagaacaaccgatccataacttgttgtaagtgatcagtctaatcgacgactaccaa 2027 Query: 254 gtcgtcgtctgtgaatatctggttgtacgacgagtccatgtcgtgcacgacgagcttctc 313 ||| || |||||| |||| |||||||||||||||||||| || |||||||| |||||||| Sbjct: 2026 gtcatcatctgtgtatatatggttgtacgacgagtccatatcatgcacgacaagcttctc 1967 Query: 314 agcggtgacggcagcgctggtggcattgttgaaca 348 ||||||||| || || |||||| |||||||||| Sbjct: 1966 ggcggtgacgctagtgccggtggcgttgttgaaca 1932
>emb|AJ567377.2|HVU567377 Hordeum vulgare partial mRNA for sucrose-sucrose-1-fructosyltransferase (1-sst gene) Length = 2157 Score = 139 bits (70), Expect = 7e-30 Identities = 118/134 (88%) Strand = Plus / Minus Query: 215 aacttgttgtaagtgatcagtctaatcgacgattaccaagtcgtcgtctgtgaatatctg 274 ||||| ||||| | |||||| |||| |||||| ||||||||||||||||||| |||| || Sbjct: 1938 aacttcttgtacgcgatcagcctaaccgacgactaccaagtcgtcgtctgtgtatatatg 1879 Query: 275 gttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggt 334 |||||||||||||||||| |||||||||| ||||||||| ||||||||| | || ||| Sbjct: 1878 gttgtacgacgagtccatatcgtgcacgatgagcttctcggcggtgacgctcgtgccggt 1819 Query: 335 ggcattgttgaaca 348 |||||||||||||| Sbjct: 1818 ggcattgttgaaca 1805 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 aacatcatctaattcatctta 96 ||||||||||||||||||||| Sbjct: 2076 aacatcatctaattcatctta 2056
>dbj|AB159786.1| Triticum aestivum 1-SST gene for sucrose:sucrose 1-fructosyltransferase, complete cds Length = 3326 Score = 113 bits (57), Expect = 4e-22 Identities = 99/113 (87%) Strand = Plus / Minus Query: 236 ctaatcgacgattaccaagtcgtcgtctgtgaatatctggttgtacgacgagtccatgtc 295 ||||||||||| ||||||||| || |||||| |||| |||||||||||||||||||| || Sbjct: 3326 ctaatcgacgactaccaagtcatcatctgtgtatatatggttgtacgacgagtccatatc 3267 Query: 296 gtgcacgacgagcttctcagcggtgacggcagcgctggtggcattgttgaaca 348 |||||||| |||||||| ||||||||| || || |||||| |||||||||| Sbjct: 3266 atgcacgacaagcttctcggcggtgacgctagtgccggtggcgttgttgaaca 3214
>gb|AF069309.1| Triticum aestivum vacuolar invertase (WIVRV) mRNA, partial cds Length = 1840 Score = 79.8 bits (40), Expect = 5e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 255 tcgtcgtctgtgaatatctggttgtacgacgagtccatgtcgtgcacgacgagcttctca 314 |||||| | ||||| ||||||||||| || |||||| |||||||| ||||||||||| Sbjct: 1452 tcgtcggccgtgaagatctggttgtaggagtcgtccatctcgtgcaccacgagcttctcc 1393 Query: 315 gcggtgacggcagcgctggtggcattgttgaa 346 ||||||||||||||| |||||| |||||||| Sbjct: 1392 acggtgacggcagcgccggtggcgttgttgaa 1361
>gb|AF481763.1| Lolium perenne fructosyltransferase (FT1) mRNA, complete cds Length = 2386 Score = 75.8 bits (38), Expect = 8e-11 Identities = 71/82 (86%) Strand = Plus / Minus Query: 265 tgaatatctggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacgg 324 |||| ||||||||||| ||||||||||| || ||||| |||||||||||| ||||||||| Sbjct: 1974 tgaagatctggttgtaggacgagtccatctcatgcaccacgagcttctcaacggtgacgg 1915 Query: 325 cagcgctggtggcattgttgaa 346 ||| |||||| |||||||| Sbjct: 1914 agccgccggtggcgttgttgaa 1893
>emb|AJ532551.1|LTE532551 Lolium temulentum partial mRNA for putative soluble acid invertase (inv1:2 gene) Length = 1998 Score = 75.8 bits (38), Expect = 8e-11 Identities = 71/82 (86%) Strand = Plus / Minus Query: 265 tgaatatctggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacgg 324 |||| ||||||||||| ||||||||||| || ||||| ||||||||||| ||||||||| Sbjct: 1586 tgaagatctggttgtaggacgagtccatctcatgcaccacgagcttctcgacggtgacgg 1527 Query: 325 cagcgctggtggcattgttgaa 346 | ||||||||||||||||| Sbjct: 1526 tgccactggtggcattgttgaa 1505
>gb|AY575717.1| Triticum monococcum vacuolar invertase1 (vin1) mRNA, complete cds Length = 2414 Score = 71.9 bits (36), Expect = 1e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 255 tcgtcgtctgtgaatatctggttgtacgacgagtccatgtcgtgcacgacgagcttctca 314 |||||| | ||||| ||||||||||| || |||||| |||||||| ||||||||||| Sbjct: 2001 tcgtcggccgtgaagatctggttgtaggaatcgtccatctcgtgcaccacgagcttctcc 1942 Query: 315 gcggtgacggcagcgctggtggcattgttgaa 346 ||||||| ||||||| |||||| |||||||| Sbjct: 1941 acggtgacagcagcgccggtggcgttgttgaa 1910
>gb|AY302083.1| Saccharum hybrid cultivar soluble acid invertase (ShinvA) mRNA, partial cds Length = 2274 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacg 323 |||||||| ||||||||||| ||||| ||||||||||||| ||||||||| Sbjct: 1898 tggttgtaggacgagtccatctcgtggacgacgagcttcttggcggtgacg 1848
>gb|AF083856.1|AF083856 Saccharum hybrid cultivar H65-7052 soluble acid invertase (scinvh3'2) mRNA, partial cds Length = 1402 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacg 323 |||||||| ||||||||||| ||||| ||||||||||||| ||||||||| Sbjct: 1006 tggttgtaggacgagtccatctcgtggacgacgagcttcttggcggtgacg 956
>gb|AF062735.1|AF062735 Saccharum officinarum soluble acid invertase mRNA, partial cds Length = 1808 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacg 323 |||||||| ||||||||||| ||||| ||||||||||||| ||||||||| Sbjct: 1679 tggttgtaggacgagtccatctcgtggacgacgagcttcttggcggtgacg 1629
>gb|AF062734.1|AF062734 Saccharum robustum soluble acid invertase mRNA, partial cds Length = 1808 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacg 323 |||||||| ||||||||||| ||||| ||||||||||||| ||||||||| Sbjct: 1679 tggttgtaggacgagtccatctcgtggacgacgagcttcttggcggtgacg 1629
>gb|AY023475.1| Oryza sativa microsatellite MRG5800 containing (TCT)X8, closest to marker C1357, genomic sequence Length = 224 Score = 60.0 bits (30), Expect = 5e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctg 332 |||||||| || |||||||| ||||| ||||||||||||| || |||||| |||||| Sbjct: 77 tggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtgacgcgcgcgctg 18 Query: 333 gtggcattgttgaa 346 ||||| |||||||| Sbjct: 17 gtggcgttgttgaa 4
>gb|AY575557.1| Oryza sativa (indica cultivar-group) cultivar IR64 vacuolar invertase 2 mRNA, partial cds Length = 503 Score = 60.0 bits (30), Expect = 5e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctg 332 |||||||| || |||||||| ||||| ||||||||||||| || |||||| |||||| Sbjct: 251 tggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtgacgcgcgcgctg 192 Query: 333 gtggcattgttgaa 346 ||||| |||||||| Sbjct: 191 gtggcgttgttgaa 178
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 5e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctg 332 |||||||| || |||||||| ||||| ||||||||||||| || |||||| |||||| Sbjct: 346503 tggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtgacgcgcgcgctg 346444 Query: 333 gtggcattgttgaa 346 ||||| |||||||| Sbjct: 346443 gtggcgttgttgaa 346430
>gb|AF276704.1|AF276704 Oryza sativa vacuolar acid invertase (INV3) gene, complete cds Length = 3725 Score = 60.0 bits (30), Expect = 5e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctg 332 |||||||| || |||||||| ||||| ||||||||||||| || |||||| |||||| Sbjct: 3550 tggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtgacgcgcgcgctg 3491 Query: 333 gtggcattgttgaa 346 ||||| |||||||| Sbjct: 3490 gtggcgttgttgaa 3477
>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1359_D06 Length = 146805 Score = 60.0 bits (30), Expect = 5e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctg 332 |||||||| || |||||||| ||||| ||||||||||||| || |||||| |||||| Sbjct: 75287 tggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtgacgcgcgcgctg 75228 Query: 333 gtggcattgttgaa 346 ||||| |||||||| Sbjct: 75227 gtggcgttgttgaa 75214
>dbj|AK072245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002K22, full insert sequence Length = 2443 Score = 60.0 bits (30), Expect = 5e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctg 332 |||||||| || |||||||| ||||| ||||||||||||| || |||||| |||||| Sbjct: 2071 tggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtgacgcgcgcgctg 2012 Query: 333 gtggcattgttgaa 346 ||||| |||||||| Sbjct: 2011 gtggcgttgttgaa 1998
>gb|AF222944.1| Heteranthelium piliferum sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 311 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 284 cgagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggtggcattgtt 343 ||||||||| ||||||||||| ||| |||| || || ||| | |||| |||||||||||| Sbjct: 308 cgagtccatctcgtgcacgacaagcctctccgccgtcacgccggcgccggtggcattgtt 249 Query: 344 gaaca 348 ||||| Sbjct: 248 gaaca 244
>gb|AF222946.1| Triticum timopheevii sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 311 Score = 56.0 bits (28), Expect = 8e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 285 gagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggtggcattgttg 344 |||||||| ||||||||||||||| | || || ||||||| || | ||||||||||||| Sbjct: 307 gagtccatctcgtgcacgacgagcctttccgccgtgacggtggcaccggtggcattgttg 248 Query: 345 aaca 348 |||| Sbjct: 247 aaca 244
>gb|AF222939.1| Aegilops speltoides sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 311 Score = 56.0 bits (28), Expect = 8e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 285 gagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggtggcattgttg 344 |||||||| ||||||||||||||| | || || ||||||| || | ||||||||||||| Sbjct: 307 gagtccatctcgtgcacgacgagcctttccgccgtgacggtggcaccggtggcattgttg 248 Query: 345 aaca 348 |||| Sbjct: 247 aaca 244
>gb|AF222938.1| Bromus tectorum sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 314 Score = 56.0 bits (28), Expect = 8e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 281 cgacgagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggtggcatt 340 |||||||||||| |||| |||||||||||||| || || ||| | ||| | |||||||| Sbjct: 314 cgacgagtccatctcgtaaacgacgagcttctctgccgtcacgccggcggtagtggcatt 255 Query: 341 gttgaaca 348 |||||||| Sbjct: 254 gttgaaca 247
>gb|AY245431.1| Lolium perenne sucrose:sucrose 1-fructosyltransferase mRNA, complete cds Length = 1962 Score = 56.0 bits (28), Expect = 8e-05 Identities = 79/96 (82%) Strand = Plus / Minus Query: 251 caagtcgtcgtctgtgaatatctggttgtacgacgagtccatgtcgtgcacgacgagctt 310 ||||||||||| ||||| || ||||||| | ||| |||| ||||||||||||||| | Sbjct: 1959 caagtcgtcgttcgtgaagatatggttgtcagctgaggccatctcgtgcacgacgagcct 1900 Query: 311 ctcagcggtgacggcagcgctggtggcattgttgaa 346 ||| |||||||||| |||| ||||| |||||||| Sbjct: 1899 ctcggcggtgacggtggcgcccgtggcgttgttgaa 1864
>emb|AJ563384.1|ZMA563384 Zea mays partial ivr2 gene for vacuolar invertase, exons 1-2 Length = 1978 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttc 311 |||||||| ||||||||||| ||||| |||||||||||| Sbjct: 1673 tggttgtatgacgagtccatctcgtggacgacgagcttc 1635
>gb|AY107166.1| Zea mays PCO109921 mRNA sequence Length = 1901 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttc 311 |||||||| ||||||||||| ||||| |||||||||||| Sbjct: 1513 tggttgtatgacgagtccatctcgtggacgacgagcttc 1475
>gb|U31451.1|ZMU31451 Zea mays invertase mRNA, partial cds Length = 1530 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttc 311 |||||||| ||||||||||| ||||| |||||||||||| Sbjct: 1499 tggttgtatgacgagtccatctcgtggacgacgagcttc 1461
>emb|AJ297369.1|FAR297369 Festuca arundinacea mRNA for sucrose:sucrose 1-fructosyltransferase (1-SST gene) Length = 2045 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Minus Query: 251 caagtcgtcgtctgtgaatatctggttgtacgacgagtccatgtcgtgcacgacgagctt 310 ||||||||||| ||||| || ||||||| | |||| |||| |||| |||||||||| | Sbjct: 1962 caagtcgtcgttcgtgaagatatggttgtcagccgaggccatctcgtacacgacgagcct 1903 Query: 311 ctcagcggtgacgg 324 ||| |||||||||| Sbjct: 1902 ctcggcggtgacgg 1889
>gb|DQ267825.1| Dendrocalamopsis oldhamii vacuolar invertase BObetaFRUCT3 mRNA, complete cds Length = 2155 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Minus Query: 273 tggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctg 332 |||||||| || |||||||| ||||| |||||||| ||| ||||||||| ||| || Sbjct: 1961 tggttgtaggaggagtccatctcgtggacgacgaggctcttggcggtgacgcgggcgttg 1902 Query: 333 gtggcattgttgaa 346 |||||||||||||| Sbjct: 1901 gtggcattgttgaa 1888
>emb|AJ532550.1|LTE532550 Lolium temulentum mRNA for putative fructan 6-fructosyltransferase (6ft gene) Length = 2331 Score = 50.1 bits (25), Expect = 0.005 Identities = 55/65 (84%) Strand = Plus / Minus Query: 284 cgagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggtggcattgtt 343 |||| |||| ||||||||||||||| |||| || || ||| |||| |||||||||||| Sbjct: 1922 cgaggccatctcgtgcacgacgagcctctccgctgtcacgctggcgccggtggcattgtt 1863 Query: 344 gaaca 348 ||||| Sbjct: 1862 gaaca 1858
>dbj|AB029887.1| Triticum aestivum 6-SFT mRNA for sucrose:fructan 6-fructosyltransferase, complete cds Length = 2220 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Minus Query: 272 ctggttgtacgacgagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgct 331 |||||||| || |||||||| ||||||||||||||| | || || |||||| || | Sbjct: 1859 ctggttgtgcgctgagtccatctcgtgcacgacgagcctttccgccgtgacgctggcacc 1800 Query: 332 ggtggcattgttgaaca 348 ||||||||||||||||| Sbjct: 1799 ggtggcattgttgaaca 1783
>gb|AF222945.1| Triticum turgidum sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 311 Score = 48.1 bits (24), Expect = 0.019 Identities = 54/64 (84%) Strand = Plus / Minus Query: 285 gagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggtggcattgttg 344 |||||||| ||||||||||||||| | || || |||||| || | ||||||||||||| Sbjct: 307 gagtccatctcgtgcacgacgagcctttccgccgtgacgctggcaccggtggcattgttg 248 Query: 345 aaca 348 |||| Sbjct: 247 aaca 244
>gb|AF222943.1| Haynaldia villosa sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 311 Score = 48.1 bits (24), Expect = 0.019 Identities = 54/64 (84%) Strand = Plus / Minus Query: 285 gagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggtggcattgttg 344 |||||||| ||||||||||||||| |||| || || ||| || | ||||||||||||| Sbjct: 307 gagtccatctcgtgcacgacgagcctctccgccgtcacgctggcaccggtggcattgttg 248 Query: 345 aaca 348 |||| Sbjct: 247 aaca 244
>gb|AF222941.1| Aegilops tauschii sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 311 Score = 48.1 bits (24), Expect = 0.019 Identities = 54/64 (84%) Strand = Plus / Minus Query: 285 gagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggtggcattgttg 344 |||||||| ||||||||||||||| | || || |||||| || | ||||||||||||| Sbjct: 307 gagtccatctcgtgcacgacgagcctttccgccgtgacgctggcaccggtggcattgttg 248 Query: 345 aaca 348 |||| Sbjct: 247 aaca 244
>gb|AF222940.1| Aegilops caudata sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 311 Score = 48.1 bits (24), Expect = 0.019 Identities = 54/64 (84%) Strand = Plus / Minus Query: 285 gagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggtggcattgttg 344 |||||||| ||||||||||||||| | || || |||||| || | ||||||||||||| Sbjct: 307 gagtccatctcgtgcacgacgagcctttccgccgtgacgctggcaccggtggcattgttg 248 Query: 345 aaca 348 |||| Sbjct: 247 aaca 244
>gb|AF158101.6| Enterobacteria phage T4, complete genome Length = 168903 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 72 gacgaacatcatctaattcatc 93 |||||||||||||||||||||| Sbjct: 126674 gacgaacatcatctaattcatc 126695
>emb|AL137061.12| Human DNA sequence from clone RP11-477B16 on chromosome 13 Contains the SOX21 gene for SRY (sex determining region Y)-box 21, a bromodomain containing 7 (BP75, NAG4, CELTIX1) (BRD7) pseudogene, a ribosomal protein L21 (RPL21) pseudogene and 2 CpG islands, complete sequence Length = 180538 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 tttgcttatattttgggggatc 34 |||||||||||||||||||||| Sbjct: 98575 tttgcttatattttgggggatc 98596
>gb|U18778.1|SCE9537 Saccharomyces cerevisiae chromosome V cosmids 9537, 9581, 9495, 9867, and lambda clone 5898 Length = 66030 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 62 atttacaagtgacgaacatcat 83 |||||||||||||||||||||| Sbjct: 56367 atttacaagtgacgaacatcat 56346
>emb|X05944.1|SCPSSG Yeast PSS gene for phosphatidylserine synthetase (EC 2.7.8.8) Length = 1095 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 62 atttacaagtgacgaacatcat 83 |||||||||||||||||||||| Sbjct: 333 atttacaagtgacgaacatcat 354
>emb|X00039.1|MYT4LIG Phage T4 ligase gene Length = 1993 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 gacgaacatcatctaattcatc 93 |||||||||||||||||||||| Sbjct: 1058 gacgaacatcatctaattcatc 1037
>gb|M38465.1|PT6LIG55 Bacteriophage T6 DNA ligase gene, complete cds Length = 1530 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 gacgaacatcatctaattcatc 93 |||||||||||||||||||||| Sbjct: 595 gacgaacatcatctaattcatc 574
>dbj|D00171.1|YSCCHO1 Saccharomyces cerevisiae mRNA for phosphatidylserine synthase, complete cds Length = 1217 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 62 atttacaagtgacgaacatcat 83 |||||||||||||||||||||| Sbjct: 484 atttacaagtgacgaacatcat 505
>gb|AY486230.1| Homo sapiens clone CLL66 immunoglobulin heavy chain variable region gene, partial cds Length = 255 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 agtggctggtactccaccact 167 ||||||||||||||||||||| Sbjct: 228 agtggctggtactccaccact 248
>gb|AY596617.1| Saccharum officinarum clone SCCCLR1024G10, complete sequence Length = 2031 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 tcaaaacttgttgtaagtgat 231 ||||||||||||||||||||| Sbjct: 739 tcaaaacttgttgtaagtgat 759
>emb|AL450428.6| Human DNA sequence from clone RP11-264J11 on chromosome 9, complete sequence Length = 84808 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tgaaatgtttgcttatatttt 26 ||||||||||||||||||||| Sbjct: 2820 tgaaatgtttgcttatatttt 2840
>gb|BT008969.1| Triticum aestivum clone wdk1c.pk014.c11:fis, full insert mRNA sequence Length = 1844 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 284 cgagtccatgtcgtgcacgacgagc 308 ||||||||| ||||||||||||||| Sbjct: 1442 cgagtccatctcgtgcacgacgagc 1418
>gb|AF222947.1| Triticum aestivum sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 311 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 284 cgagtccatgtcgtgcacgacgagc 308 ||||||||| ||||||||||||||| Sbjct: 308 cgagtccatctcgtgcacgacgagc 284
>gb|AC003666.1|AC003666 Homo sapiens Xp22 BAC GS-551O19 (Genome Systems Human BAC library) and cosmids U199A7 and U209F2 (Lawrence Livermore X chromosome cosmid library) containing part of human chloride channel 4 gene, complete sequence Length = 151750 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 7 gaaatgtttgcttatattttggggg 31 |||| |||||||||||||||||||| Sbjct: 55785 gaaaggtttgcttatattttggggg 55761
>gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome 5, complete sequence Length = 245594 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 acttgaaatgtttgcttata 22 |||||||||||||||||||| Sbjct: 125127 acttgaaatgtttgcttata 125146
>gb|AC135512.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0057M06, complete sequence Length = 147673 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 tatgtgtccaagagaaaaaggaag 190 ||||||||||||||||||| |||| Sbjct: 67320 tatgtgtccaagagaaaaaagaag 67343
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 acggcagcgctggtggcatt 340 |||||||||||||||||||| Sbjct: 3670073 acggcagcgctggtggcatt 3670092
>ref|NM_001032515.1| Ciona intestinalis sp4 protein (sp4), mRNA Length = 3534 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 aaccaaaactagaacaagga 120 |||||||||||||||||||| Sbjct: 2370 aaccaaaactagaacaagga 2389
>gb|AC131752.3| Mus musculus BAC clone RP23-21D6 from chromosome 5, complete sequence Length = 203321 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 acttgaaatgtttgcttata 22 |||||||||||||||||||| Sbjct: 59883 acttgaaatgtttgcttata 59902
>gb|AC131671.3| Mus musculus BAC clone RP23-312H8 from chromosome 3, complete sequence Length = 195851 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 agagaaaaaggaagcaacag 196 |||||||||||||||||||| Sbjct: 143896 agagaaaaaggaagcaacag 143877
>gb|AC123044.4| Mus musculus BAC clone RP24-548B7 from chromosome 5, complete sequence Length = 184772 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 aagagaaaaaggaagcaacagacc 199 |||||||||||||| ||||||||| Sbjct: 153532 aagagaaaaaggaatcaacagacc 153509
>gb|AC158153.3| Mus musculus chromosome 5, clone RP23-119B3, complete sequence Length = 196824 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 agatgataggtagatgagtg 150 |||||||||||||||||||| Sbjct: 2786 agatgataggtagatgagtg 2767
>gb|BT009503.1| Triticum aestivum clone wr1.pk0085.h8:fis, full insert mRNA sequence Length = 476 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 gagtccatgtcgtgcacgacgagc 308 |||||||| ||||||||||||||| Sbjct: 128 gagtccatctcgtgcacgacgagc 105
>gb|BT009003.1| Triticum aestivum clone wdk2c.pk017.f14:fis, full insert mRNA sequence Length = 1612 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 gagtccatgtcgtgcacgacgagc 308 |||||||| ||||||||||||||| Sbjct: 1367 gagtccatctcgtgcacgacgagc 1344
>emb|BX664015.1| Serratia marcescens plasmid R478 Length = 274762 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 cttgaaatgtttgcttatat 23 |||||||||||||||||||| Sbjct: 184926 cttgaaatgtttgcttatat 184907
>emb|AJ431686.1|CIN431686 Ciona intestinalis mRNA for putative coagulation serine protease (sp4 gene) Length = 3534 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 aaccaaaactagaacaagga 120 |||||||||||||||||||| Sbjct: 2370 aaccaaaactagaacaagga 2389
>dbj|AB253419.1| Bacillus thuringiensis serovar sotto cry4-like gene for pesticidal crystal protein, complete cds Length = 2040 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tctgtgaatatctggttgta 280 |||||||||||||||||||| Sbjct: 1490 tctgtgaatatctggttgta 1471
>gb|AC027796.9| Homo sapiens chromosome 17, clone RP11-235E17, complete sequence Length = 127431 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gatgataggtagatgagtgg 151 |||||||||||||||||||| Sbjct: 112939 gatgataggtagatgagtgg 112920
>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 Length = 2005935 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 aacaaggaacataaatcaag 132 |||||||||||||||||||| Sbjct: 390981 aacaaggaacataaatcaag 391000
>gb|AF222933.1| Psathyrostachys huashanica sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 311 Score = 40.1 bits (20), Expect = 4.6 Identities = 53/64 (82%) Strand = Plus / Minus Query: 285 gagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggtggcattgttg 344 |||||||| ||||||||||| ||| | || || || ||| | || | ||||||||||||| Sbjct: 307 gagtccatctcgtgcacgacaagcctttccgctgtcacgccggcaccggtggcattgttg 248 Query: 345 aaca 348 |||| Sbjct: 247 aaca 244
>gb|AF222932.1| Psathyrostachys fragilis sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 311 Score = 40.1 bits (20), Expect = 4.6 Identities = 53/64 (82%) Strand = Plus / Minus Query: 285 gagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggtggcattgttg 344 |||||||| ||||||||||| ||| | || || || ||| | || | ||||||||||||| Sbjct: 307 gagtccatctcgtgcacgacaagcctttccgctgtcacgccggcaccggtggcattgttg 248 Query: 345 aaca 348 |||| Sbjct: 247 aaca 244
>gb|AF222931.1| Psathyrostachys juncea sucrose:fructan 6-fructosyltransferase (6-SFT) gene, partial cds Length = 311 Score = 40.1 bits (20), Expect = 4.6 Identities = 53/64 (82%) Strand = Plus / Minus Query: 285 gagtccatgtcgtgcacgacgagcttctcagcggtgacggcagcgctggtggcattgttg 344 |||||||| ||||||||||| ||| | || || || ||| | || | ||||||||||||| Sbjct: 307 gagtccatctcgtgcacgacaagcctttccgctgtcacgccggcaccggtggcattgttg 248 Query: 345 aaca 348 |||| Sbjct: 247 aaca 244
>gb|AF253410.1| Triticum urartu sucrose:fructan 6-fructosyltransferase gene, partial cds Length = 311 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 gagtccatgtcgtgcacgacgagc 308 |||||||| ||||||||||||||| Sbjct: 307 gagtccatctcgtgcacgacgagc 284
>gb|AF230482.1|AF230482 Hydra vulgaris tight junction protein ZO-1 (ZO-1) mRNA, complete cds Length = 5888 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 aaaaccaaaactagaacaag 118 |||||||||||||||||||| Sbjct: 1726 aaaaccaaaactagaacaag 1745
>gb|AC022209.4|AC022209 Homo sapiens BAC clone RP11-588M21 from 11, complete sequence Length = 177314 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 acaaggaacataaatcaaga 133 |||||||||||||||||||| Sbjct: 81305 acaaggaacataaatcaaga 81324
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 tatgtgtccaagagaaaaaggaag 190 ||||||||||||||||||| |||| Sbjct: 15561910 tatgtgtccaagagaaaaaagaag 15561933
>gb|AC129885.3| Didelphis virginiana clone LB3-35M17, complete sequence Length = 164861 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tgtttgcttatattttgggg 30 |||||||||||||||||||| Sbjct: 29898 tgtttgcttatattttgggg 29879
>gb|AC141896.5| Mus musculus BAC clone RP23-238B2 from 5, complete sequence Length = 240890 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 aagagaaaaaggaagcaacagacc 199 |||||||||||||| ||||||||| Sbjct: 2164 aagagaaaaaggaatcaacagacc 2141
>emb|AL450341.10| Mouse DNA sequence from clone RP23-401L17 on chromosome 2, complete sequence Length = 214573 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 tctcagcggtgacggcagcgctgg 333 |||||||||||||||||| ||||| Sbjct: 134596 tctcagcggtgacggcagggctgg 134573
>gb|AC101857.12| Mus musculus chromosome 5, clone RP23-304E8, complete sequence Length = 167722 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 agatgataggtagatgagtg 150 |||||||||||||||||||| Sbjct: 107035 agatgataggtagatgagtg 107016
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 tatgtgtccaagagaaaaaggaag 190 ||||||||||||||||||| |||| Sbjct: 15649429 tatgtgtccaagagaaaaaagaag 15649452
>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold Length = 1751794 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tgtttgcttatattttgggg 30 |||||||||||||||||||| Sbjct: 657177 tgtttgcttatattttgggg 657158
>emb|AL807242.7| Mouse DNA sequence from clone RP23-152G19 on chromosome 4, complete sequence Length = 213746 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ataattgatttacaagtgac 74 |||||||||||||||||||| Sbjct: 158114 ataattgatttacaagtgac 158095 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,675,557 Number of Sequences: 3902068 Number of extensions: 3675557 Number of successful extensions: 89299 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 89026 Number of HSP's gapped (non-prelim): 266 length of query: 348 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 326 effective length of database: 17,147,199,772 effective search space: 5589987125672 effective search space used: 5589987125672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)