ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DGAT1_MOUSE (Q9Z2A7) Diacylglycerol O-acyltransferase 1 (EC 2.3.... 30 1.9
2XRN1_YEAST (P22147) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Stran... 29 2.4
3PALI_EMENI (O93956) pH-response regulator protein palI/RIM9 29 3.2
4VP91_NPVEP (Q91GH8) Capsid-associated protein Vp91 precursor 28 5.5
5DISI5_CERCE (P83041) Disintegrin CC5 [Contains: Disintegrin CC5B] 28 5.5
6DIS8A_CERCE (P83043) Disintegrin CC8A 28 5.5
7DGAT1_RAT (Q9ERM3) Diacylglycerol O-acyltransferase 1 (EC 2.3.1.... 28 5.5
8DISS_ECHCA (P83658) Disintegrin schistatin 28 7.1
9NSP2_MEDTR (Q5NE24) Nodulation signaling pathway 2 protein 28 7.1

>DGAT1_MOUSE (Q9Z2A7) Diacylglycerol O-acyltransferase 1 (EC 2.3.1.20)|
           (Diglyceride acyltransferase)
          Length = 498

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -3

Query: 273 PCMYVV--IFFSRSFQI*FHHAIGRLLSSFSFVRACVHLYALVNLVTLICLSLAV-YYVQ 103
           PC+ +   IF   +FQI    A+G L            L  +VNL T+IC   AV   V+
Sbjct: 143 PCVIIASNIFVVAAFQIEKRLAVGALTEQMGL------LLHVVNLATIICFPAAVALLVE 196

Query: 102 EIHTIGCVCVL 70
            I  +G V  L
Sbjct: 197 SITPVGSVFAL 207



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>XRN1_YEAST (P22147) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Strand exchange|
           protein 1) (KAR(-)-enhancing mutation protein) (5'-3'
           exoribonuclease) (DNA strand transfer protein beta)
           (STP-beta) (p175)
          Length = 1528

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 51  LNQITVEAHTRTQSYVSLVRSTQPN*DKLM-SPN*PVHIN-EHTHARTKNYLTTDRLHDE 224
           L +++ E  TR Q    L+ S  P  D L  SP   +  + EH H   K Y+T      E
Sbjct: 660 LRKLSPEEKTRNQFGKDLIYSFNPQVDNLYKSPLGGIFSDIEHNHCVEKEYITIPLDSSE 719

Query: 225 IKFGM 239
           I++G+
Sbjct: 720 IRYGL 724



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>PALI_EMENI (O93956) pH-response regulator protein palI/RIM9|
          Length = 549

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 75  HTRTQSYVSLVRSTQPN*DKLMSPN*PVHINEHTHARTKN 194
           ++RTQSYV   R+  P   +   PN P   N+  HAR+++
Sbjct: 474 YSRTQSYVPPRRNWGPQAYQSSEPNLPYQPNQPRHARSQS 513



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>VP91_NPVEP (Q91GH8) Capsid-associated protein Vp91 precursor|
          Length = 826

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 156 VHINEHTHARTKNYLT-TDRLHDEIKFGMN 242
           VH N H H +   Y+   D L+D+++F  N
Sbjct: 783 VHYNRHVHVKDGRYMACPDHLYDDVEFRCN 812



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>DISI5_CERCE (P83041) Disintegrin CC5 [Contains: Disintegrin CC5B]|
          Length = 65

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 332 NPPAAQPKQGMHACIAGACVHACMLLS 252
           +P   +PK+G H CI+G C   C  LS
Sbjct: 9   DPVTCKPKRGEH-CISGPCCRNCKFLS 34



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>DIS8A_CERCE (P83043) Disintegrin CC8A|
          Length = 65

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 332 NPPAAQPKQGMHACIAGACVHACMLLS 252
           +P   +PK+G H CI+G C   C  LS
Sbjct: 9   DPVTCKPKRGEH-CISGPCCRNCKFLS 34



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>DGAT1_RAT (Q9ERM3) Diacylglycerol O-acyltransferase 1 (EC 2.3.1.20)|
           (Diglyceride acyltransferase)
          Length = 498

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -3

Query: 273 PCMYVV--IFFSRSFQI*FHHAIGRLLSSFSFVRACVHLYALVNLVTLICLSLAV-YYVQ 103
           PC+ +   IF   +FQI    ++G L            L  +VNL T+IC   AV   V+
Sbjct: 143 PCLIIASNIFIVATFQIEKRLSVGALTEQMGL------LLHVVNLATIICFPAAVALLVE 196

Query: 102 EIHTIGCVCVL 70
            I  +G +  L
Sbjct: 197 SITPVGSLFAL 207



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>DISS_ECHCA (P83658) Disintegrin schistatin|
          Length = 64

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 332 NPPAAQPKQGMHACIAGACVHACMLLSS 249
           +P   +P++G H CI+G C   C  L+S
Sbjct: 8   DPVICEPREGEH-CISGPCCENCYFLNS 34



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>NSP2_MEDTR (Q5NE24) Nodulation signaling pathway 2 protein|
          Length = 508

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 159 HINEHTHARTKNYLTTDRLHD 221
           H N H H   K+YLTT+  HD
Sbjct: 180 HNNHHHHNNNKHYLTTNGPHD 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,313,791
Number of Sequences: 219361
Number of extensions: 1037729
Number of successful extensions: 2244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2240
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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