Clone Information

BLAST Search Result

Clone Name	rbart60e02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AGGF1_HUMAN (Q8N302) Angiogenic factor with G patch and FHA doma...	32	0.48
2	MAF_RAT (P54844) Transcription factor Maf (Proto-oncogene c-maf)	31	0.82
3	NPCL1_RAT (Q6T3U3) Niemann-Pick C1-like protein 1 precursor	30	1.1
4	MAF_MOUSE (P54843) Transcription factor Maf (Proto-oncogene c-maf)	30	1.4
5	CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated n...	30	1.4
6	KEN_DROME (O77459) Probable transcription factor Ken (Protein Ke...	30	1.8
7	VE10_VARV (P33821) Protein E10	30	1.8
8	VE10_VACCV (P23373) Protein E10	30	1.8
9	VE10_VACCC (P21050) Protein E10	30	1.8
10	CAR2_DICDI (P34907) Cyclic AMP receptor 2 (cAMP receptor 2)	30	1.8
11	MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)	30	1.8
12	WRK65_ARATH (Q9LP56) Probable WRKY transcription factor 65 (WRKY...	29	2.4
13	HUNB_DROAD (O46232) Protein hunchback (Fragments)	29	3.1
14	TRMU_BACHK (Q6HDD0) Probable tRNA (5-methylaminomethyl-2-thiouri...	28	4.1
15	TRMU_BACCZ (Q634E9) Probable tRNA (5-methylaminomethyl-2-thiouri...	28	4.1
16	TRMU_BACCR (Q812R6) Probable tRNA (5-methylaminomethyl-2-thiouri...	28	4.1
17	TRMU_BACC1 (Q730D7) Probable tRNA (5-methylaminomethyl-2-thiouri...	28	4.1
18	TRMU_BACAN (Q81JE5) Probable tRNA (5-methylaminomethyl-2-thiouri...	28	4.1
19	HUNB_DROIK (O46242) Protein hunchback (Fragments)	28	4.1
20	MOT3_YEAST (P54785) Transcriptional activator/repressor MOT3 (Mo...	28	5.3
21	CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel al...	28	5.3
22	CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alph...	28	5.3
23	HUNB_DROLI (O46244) Protein hunchback (Fragments)	28	5.3
24	HUNB_DRODS (O46240) Protein hunchback (Fragments)	28	5.3
25	HUNB_DROCY (O46238) Protein hunchback (Fragments)	28	5.3
26	IAR1_ARATH (Q9M647) IAA-alanine resistance protein 1	28	5.3
27	PHAG_PSEOL (Q9KJH8) (R)-3-hydroxydecanoyl-ACP:CoA transacylase (...	28	5.3
28	PANX3_MOUSE (Q8CEG0) Pannexin-3	28	5.3
29	UBP11_YEAST (P36026) Ubiquitin carboxyl-terminal hydrolase 11 (E...	28	6.9
30	NPCL1_MOUSE (Q6T3U4) Niemann-Pick C1-like protein 1 precursor	28	6.9
31	TRPC_BUCSC (Q44603) Tryptophan biosynthesis protein trpCF [Inclu...	28	6.9
32	TRMU_BACSU (O35020) Probable tRNA (5-methylaminomethyl-2-thiouri...	28	6.9
33	TRMU_BACHD (Q9KDF2) Probable tRNA (5-methylaminomethyl-2-thiouri...	28	6.9
34	HLDE_STRCO (Q9Z5B5) Bifunctional protein hldE [Includes: D-beta-...	28	6.9
35	VCOM_SHIDY (Q53979) Cryptic Mu-phage protein com	28	6.9
36	VCOM_BPMU (Q38621) Protein com	28	6.9
37	YJ9L_YEAST (P47175) Hypothetical 41.2 kDa protein in RPS4A-BAT2 ...	28	6.9
38	YG51_YEAST (P50089) Hypothetical 89.2 kDa protein in YHB1-PFK1 i...	28	6.9
39	TRMU_STAES (Q8CSA5) Probable tRNA (5-methylaminomethyl-2-thiouri...	28	6.9
40	TRMU_STAEQ (Q5HNS9) Probable tRNA (5-methylaminomethyl-2-thiouri...	28	6.9
41	TRMU_BACLD (Q65GR9) Probable tRNA (5-methylaminomethyl-2-thiouri...	28	6.9
42	YJI3_YEAST (P47030) Hypothetical 68.8 kDa protein in EXO70-ARP4 ...	28	6.9
43	HUNB_DROSL (O46256) Protein hunchback (Fragments)	28	6.9
44	HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor	24	7.1
45	TRMU_OCEIH (Q8CXC7) Probable tRNA (5-methylaminomethyl-2-thiouri...	27	9.1
46	RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1	27	9.1
47	TIE1_BOVIN (Q06805) Tyrosine-protein kinase receptor Tie-1 precu...	27	9.1
48	3HIDH_RAT (P29266) 3-hydroxyisobutyrate dehydrogenase, mitochond...	27	9.1
49	3HIDH_MOUSE (Q99L13) 3-hydroxyisobutyrate dehydrogenase, mitocho...	27	9.1

>AGGF1_HUMAN (Q8N302) Angiogenic factor with G patch and FHA domains 1|
           (Angiogenic factor VG5Q) (Vasculogenesis gene on 5q)
           (hVG5Q)
          Length = 714

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 88  YKLVSVPNRMLQGAQHEGYMS*TGDAQSRRR-RVENWRYPWGCYRLN*NFRFISTYGCNS 264
           Y  VS+PN++ + +  +     T    S+   +VEN  YP      N  +R +  +  NS
Sbjct: 112 YNDVSLPNKVTELSDQQDQAIETSILNSKDHLQVENDAYPGTDRTENVKYRQVDHFASNS 171

Query: 265 RAPSSASCRLDTAL 306
           + P+SA    DT+L
Sbjct: 172 QEPASALATEDTSL 185

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>MAF_RAT (P54844) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 369

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 13  SGVFPIYHHHHHYNTGN 63
           SG  P YHHHHH+ TG+
Sbjct: 175 SGGAPHYHHHHHHATGH 191

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>NPCL1_RAT (Q6T3U3) Niemann-Pick C1-like protein 1 precursor|
          Length = 1331

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 271  PSSASCRLDTALSYIRKPMNQNSCPSTETT 360
            PSS+ CRL     YIR P     CPST+T+
Sbjct: 963  PSSSCCRL-----YIRGPHKDEFCPSTDTS 987

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>MAF_MOUSE (P54843) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 370

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 13  SGVFPIYHHHHHYNTGN 63
           SG  P YHHHHH+  G+
Sbjct: 175 SGAAPHYHHHHHHAAGH 191

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>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase D) (CANP D) (Small optic lobes protein)
          Length = 1594

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 34  HHHHHYNTGNAKNKNKHVYKLVSVPNRMLQGAQHEGYMS*TGDAQSRRR 180
           HHHHHY     + +++H      +  R L+G    G  S  G     RR
Sbjct: 199 HHHHHYLHQELEEQHQHQLHSQHLHKRHLKGRSASGSGSGPGSGSGLRR 247

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>KEN_DROME (O77459) Probable transcription factor Ken (Protein Ken and Barbie)|
          Length = 601

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 31  YHHHHHYNTGNAKNKNKH 84
           +HHHHH+N  N  N N +
Sbjct: 250 HHHHHHHNHNNNNNNNNN 267



 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 31  YHHHHHYNTGNAKNKNKHVYKLVSVPNRML 120
           +HHHH++N  N  N N      ++  N  L
Sbjct: 252 HHHHHNHNNNNNNNNNNSSSSTINPVNLSL 281

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>VE10_VARV (P33821) Protein E10|
          Length = 95

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 310 TTRPCPACKKHLTVLVSCNH 251
           +T PCPAC++H T+ +  N+
Sbjct: 39  STLPCPACRRHATIAIEDNN 58

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>VE10_VACCV (P23373) Protein E10|
          Length = 95

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 310 TTRPCPACKKHLTVLVSCNH 251
           +T PCPAC++H T+ +  N+
Sbjct: 39  STLPCPACRRHATIAIEDNN 58

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>VE10_VACCC (P21050) Protein E10|
          Length = 95

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 310 TTRPCPACKKHLTVLVSCNH 251
           +T PCPAC++H T+ +  N+
Sbjct: 39  STLPCPACRRHATIAIEDNN 58

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>CAR2_DICDI (P34907) Cyclic AMP receptor 2 (cAMP receptor 2)|
          Length = 375

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 31  YHHHHHYNTGNAKNKNKHV 87
           +HHHHH+N  N  N N ++
Sbjct: 350 HHHHHHHNHYNNNNNNNNI 368

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>MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 403

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 13  SGVFPIYHHHHHYNTGN 63
           SG  P YHHHHH+  G+
Sbjct: 175 SGAGPHYHHHHHHAAGH 191

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>WRK65_ARATH (Q9LP56) Probable WRKY transcription factor 65 (WRKY DNA-binding|
           protein 65)
          Length = 259

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
 Frame = +1

Query: 91  KLVSVPNRMLQGAQHEGYMS*TGDAQSRR----RRVENWRYPWGCYRLN*NFRFISTYGC 258
           ++V+VP + ++G++H+G  +   D+ + R    + ++   YP G YR +      ST GC
Sbjct: 52  RVVNVPMKEMEGSRHKGDTTPPSDSWAWRKYGQKPIKGSPYPRGYYRCS------STKGC 105

Query: 259 NSR 267
            +R
Sbjct: 106 PAR 108

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>HUNB_DROAD (O46232) Protein hunchback (Fragments)|
          Length = 192

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 25 PIYHHHHHYNTGNAKNKNKH 84
          PI HHHHH++  +++ ++ H
Sbjct: 14 PISHHHHHHHAHHSRRQHPH 33

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>TRMU_BACHK (Q6HDD0) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 371

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 181 DVFCSERLLFKTYILHAVPLGA 116
           DV C++ + FK ++ HA+ LGA
Sbjct: 101 DVMCNKEIKFKAFLEHAIALGA 122

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>TRMU_BACCZ (Q634E9) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 371

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 181 DVFCSERLLFKTYILHAVPLGA 116
           DV C++ + FK ++ HA+ LGA
Sbjct: 101 DVMCNKEIKFKAFLEHAIALGA 122

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>TRMU_BACCR (Q812R6) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 371

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 181 DVFCSERLLFKTYILHAVPLGA 116
           DV C++ + FK ++ HA+ LGA
Sbjct: 101 DVMCNKEIKFKAFLEHAIALGA 122

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>TRMU_BACC1 (Q730D7) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 371

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 181 DVFCSERLLFKTYILHAVPLGA 116
           DV C++ + FK ++ HA+ LGA
Sbjct: 101 DVMCNKEIKFKAFLEHAIALGA 122

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>TRMU_BACAN (Q81JE5) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 371

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 181 DVFCSERLLFKTYILHAVPLGA 116
           DV C++ + FK ++ HA+ LGA
Sbjct: 101 DVMCNKEIKFKAFLEHAIALGA 122

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>HUNB_DROIK (O46242) Protein hunchback (Fragments)|
          Length = 193

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 25 PIYHHHHHYNTGNAKNKNKH 84
          PI HHHHH++  ++ +++ H
Sbjct: 14 PISHHHHHHHAHHSHHQHSH 33

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>MOT3_YEAST (P54785) Transcriptional activator/repressor MOT3 (Modulator of|
           transcription protein 3) (Hypoxic gene repressor protein
           7)
          Length = 490

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 25  PIYHHHHHYNTGNAKN 72
           P +HHHHH NT N  N
Sbjct: 238 PPHHHHHHSNTHNNLN 253

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>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.1)
           (Cav3.1c) (NBR13)
          Length = 2377

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 31  YHHHHHYNTGN 63
           +HHHHHY+ GN
Sbjct: 499 HHHHHHYHLGN 509

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>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.1)
          Length = 2254

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 31  YHHHHHYNTGN 63
           +HHHHHY+ GN
Sbjct: 499 HHHHHHYHLGN 509

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>HUNB_DROLI (O46244) Protein hunchback (Fragments)|
          Length = 198

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 25 PIYHHHHHYNTGNAKNKNKH 84
          PI HHHHH++  ++ +++ H
Sbjct: 14 PISHHHHHHHAHHSHHQHPH 33

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>HUNB_DRODS (O46240) Protein hunchback (Fragments)|
          Length = 198

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 25 PIYHHHHHYNTGNAKNKNKH 84
          PI HHHHH++  ++ +++ H
Sbjct: 14 PISHHHHHHHAHHSHHQHPH 33

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>HUNB_DROCY (O46238) Protein hunchback (Fragments)|
          Length = 198

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 25 PIYHHHHHYNTGNAKNKNKH 84
          PI HHHHH++  ++ +++ H
Sbjct: 14 PISHHHHHHHAHHSHHQHPH 33

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>IAR1_ARATH (Q9M647) IAA-alanine resistance protein 1|
          Length = 338

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 7   DSSGVFPIYHHHHHYNTGNAKNKNK 81
           +SSG     HHHHH++ G+ K K++
Sbjct: 227 NSSGSNTWGHHHHHHHAGSKKLKDE 251

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>PHAG_PSEOL (Q9KJH8) (R)-3-hydroxydecanoyl-ACP:CoA transacylase (EC 2.4.1.-)|
           (3-hydroxyacyl-CoA-acyl carrier protein transferase)
          Length = 295

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 368 YIQVVSVEGHEFWFMGFLMYDKAVSSLQEALDGAREL 258
           Y  V S++ HE+  M F + +     L+ ALDGAR +
Sbjct: 175 YRHVSSLDSHEYAQMHFHINEVLQHDLERALDGARNI 211

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>PANX3_MOUSE (Q8CEG0) Pannexin-3|
          Length = 392

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 237 FHIYLWLQLTSTVKCFLQAGHGLVVHQETHEPELMPFNRDNLNI 368
           FH+ ++ Q      CF++ G   ++H ETH PEL+     +L++
Sbjct: 230 FHLDVFFQ--DEFNCFIKTG---LLHDETHVPELITCRLTSLSV 268

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>UBP11_YEAST (P36026) Ubiquitin carboxyl-terminal hydrolase 11 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 11)
           (Ubiquitin-specific-processing protease 11)
           (Deubiquitinating enzyme 11)
          Length = 717

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
 Frame = +1

Query: 25  PIYHHHHHY----NTGNAKNKN 78
           P +HHHHH+    +T NAK +N
Sbjct: 556 PHHHHHHHHSSDDSTKNAKKRN 577

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>NPCL1_MOUSE (Q6T3U4) Niemann-Pick C1-like protein 1 precursor|
          Length = 1333

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 271  PSSASCRLDTALSYIRKPMNQNSCPSTETT 360
            PSS+ CR+     Y R P     CPST+T+
Sbjct: 963  PSSSCCRI-----YTRGPHKDEFCPSTDTS 987

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>TRPC_BUCSC (Q44603) Tryptophan biosynthesis protein trpCF [Includes:|
           Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
           (IGPS); N-(5'-phospho-ribosyl)anthranilate isomerase (EC
           5.3.1.24) (PRAI)]
          Length = 461

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 232 SFSSACNIPRGIASSPLDVFCSERLLFKTYILHAVPLGA 116
           +   A NI + +    + VFC+E +   +YI+  +PL A
Sbjct: 294 NLKKAMNITKNVHMKYIGVFCNENISTISYIIDKIPLYA 332

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>TRMU_BACSU (O35020) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 371

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 181 DVFCSERLLFKTYILHAVPLGA 116
           DV C++ + FK ++ HA+ LGA
Sbjct: 101 DVLCNKEIKFKAFLEHALSLGA 122

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>TRMU_BACHD (Q9KDF2) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 371

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 181 DVFCSERLLFKTYILHAVPLGA 116
           DV C++ + FK ++ HA+ LGA
Sbjct: 102 DVMCNKEIKFKAFLNHALTLGA 123

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>HLDE_STRCO (Q9Z5B5) Bifunctional protein hldE [Includes: D-beta-D-heptose|
           7-phosphate kinase (EC 2.7.1.-) (D-beta-D-heptose
           7-phosphotransferase); D-beta-D-heptose 1-phosphate
           adenosyltransferase (EC 2.7.7.-)]
          Length = 463

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +3

Query: 96  RECTEPNAPRGTA*RIYVLNRRRSEQKTSSGELAIPLGMLQAELKLPFHIYLWLQLTSTV 275
           +EC E   P G A   Y+  R   E    +G    P G+   EL  P+   + L LT TV
Sbjct: 43  QECAERIRPGGAALAAYLAARDGREVTLIAGVGEDPAGLALRELLAPWLKLIPLPLTGTV 102

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>VCOM_SHIDY (Q53979) Cryptic Mu-phage protein com|
          Length = 62

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 298 CPACKKHLTVLVSCNH 251
           CP CK+H+ +L +C H
Sbjct: 26  CPRCKRHIIMLNACEH 41

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>VCOM_BPMU (Q38621) Protein com|
          Length = 62

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 298 CPACKKHLTVLVSCNH 251
           CP CK+H+ +L +C H
Sbjct: 26  CPRCKRHIIMLNACEH 41

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>YJ9L_YEAST (P47175) Hypothetical 41.2 kDa protein in RPS4A-BAT2 intergenic|
           region
          Length = 358

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 31  YHHHHHYNTGNAKNKNKHVYKLVSVPNRMLQGAQHE 138
           YH  H Y T N   +N    K V  P+  LQ  Q +
Sbjct: 183 YHQFHAYQTANFLQENFEAIKKVVCPDSCLQHQQRQ 218

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>YG51_YEAST (P50089) Hypothetical 89.2 kDa protein in YHB1-PFK1 intergenic|
           region
          Length = 785

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 10  SSGVFPIYHHHHHYNTGNAKNKNKHVYKLVSVPNRMLQGAQHEGYMS*TGDAQSRR 177
           SSG    +HHHHH+N         HV +  +  +     ++ +   S T D Q +R
Sbjct: 721 SSGQRKAHHHHHHHN---------HVSRTKTTESTKSGNSKKDSSSSSTNDHQFKR 767

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>TRMU_STAES (Q8CSA5) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 372

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 181 DVFCSERLLFKTYILHAVPLGA 116
           DV C++ + FK ++ HA+ LGA
Sbjct: 99  DVMCNKEIKFKAFLEHALKLGA 120

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>TRMU_STAEQ (Q5HNS9) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 372

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 181 DVFCSERLLFKTYILHAVPLGA 116
           DV C++ + FK ++ HA+ LGA
Sbjct: 99  DVMCNKEIKFKAFLEHALKLGA 120

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>TRMU_BACLD (Q65GR9) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 372

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 181 DVFCSERLLFKTYILHAVPLGA 116
           DV C++ + FK ++ HA+ LGA
Sbjct: 101 DVMCNKEIKFKAFLEHALSLGA 122

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>YJI3_YEAST (P47030) Hypothetical 68.8 kDa protein in EXO70-ARP4 intergenic|
           region
          Length = 604

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 10  SSGVFPIYHHHHHYNTGNAKNKNKH 84
           S+ V P  HHHHH++     N N H
Sbjct: 389 STSVLPFPHHHHHHH--QLHNPNSH 411

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>HUNB_DROSL (O46256) Protein hunchback (Fragments)|
          Length = 196

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 25 PIYHHHHHYNTGNAKNKNKH 84
          PI HHHHH++  ++ +++ H
Sbjct: 14 PISHHHHHHHAHHSYHQHPH 33

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>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor|
          Length = 351

 Score = 23.9 bits (50), Expect(2) = 7.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 34  HHHHHYNTGNAKNKNKH 84
           HHHHH++  +  +  +H
Sbjct: 117 HHHHHHHAAHHHHHEEH 133



 Score = 22.3 bits (46), Expect(2) = 7.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 25  PIYHHHHH 48
           P +HHHHH
Sbjct: 100 PHHHHHHH 107

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>TRMU_OCEIH (Q8CXC7) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 371

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 181 DVFCSERLLFKTYILHAVPLGA 116
           DV C++ + FK ++ HA+ LGA
Sbjct: 100 DVMCNKEIKFKAFLDHALALGA 121

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>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1|
          Length = 1889

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +2

Query: 248 PMVATHEHRQVLL---AGWTRPCRTSGNP 325
           P++ T E  +  L   AGW  PC  SG P
Sbjct: 879 PLMCTKEEAEEALDTKAGWVSPCHLSGEP 907

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>TIE1_BOVIN (Q06805) Tyrosine-protein kinase receptor Tie-1 precursor (EC|
           2.7.10.1)
          Length = 1136

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 379 PLKSIFRLSLLKGMSSGSWVS*CTTRPCPAC 287
           PL S F   +++G  +G W   C T+ CP C
Sbjct: 200 PLGSAFFRLIVRGCEAGRWGQDC-TKECPGC 229

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>3HIDH_RAT (P29266) 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           precursor (EC 1.1.1.31) (HIBADH)
          Length = 335

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 101 VYRTECSKGHSMKDICLKQETLRAED 178
           +YR  CSKG+S KD     + LR E+
Sbjct: 308 IYRMMCSKGYSKKDFSSVFQYLREEE 333

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>3HIDH_MOUSE (Q99L13) 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           precursor (EC 1.1.1.31) (HIBADH)
          Length = 335

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 101 VYRTECSKGHSMKDICLKQETLRAED 178
           +YR  CSKG+S KD     + LR E+
Sbjct: 308 IYRMMCSKGYSKKDFSSVFQYLREEE 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,613,624
Number of Sequences: 219361
Number of extensions: 1026510
Number of successful extensions: 4731
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 3540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4209
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result