>ref|NM_000232.3| Homo sapiens sarcoglycan, beta (43kDa dystrophin-associated
            glycoprotein) (SGCB), mRNA
          Length = 4229

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 6    caaataaacattcttttacaa 26
            |||||||||||||||||||||
Sbjct: 1558 caaataaacattcttttacaa 1538

>gb|AC114459.6| Rattus norvegicus 4 BAC CH230-388N23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 190345

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 15    attcttttacaatcctcaaaacagc 39
             ||||||||| |||||||||||||||
Sbjct: 65421 attcttttataatcctcaaaacagc 65445

>gb|AC156244.2| Xenopus tropicalis clone CH216-92I18, complete sequence
          Length = 140675

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 17     tcttttacaatcctcaaaaca 37
              |||||||||||||||||||||
Sbjct: 124794 tcttttacaatcctcaaaaca 124774

>emb|CR594277.1| full-length cDNA clone CS0DB008YL14 of Neuroblastoma Cot
            10-normalized of Homo sapiens (human)
          Length = 2615

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 6    caaataaacattcttttacaa 26
            |||||||||||||||||||||
Sbjct: 1297 caaataaacattcttttacaa 1277

>gb|AC093858.2| Homo sapiens BAC clone RP11-535C7 from 4, complete sequence
          Length = 151113

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     caaataaacattcttttacaa 26
             |||||||||||||||||||||
Sbjct: 13379 caaataaacattcttttacaa 13399

>emb|BX510915.23| Zebrafish DNA sequence from clone DKEY-24M12 in linkage group 21,
              complete sequence
          Length = 253718

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 8      aataaacattcttttacaatc 28
              |||||||||||||||||||||
Sbjct: 168124 aataaacattcttttacaatc 168144

>gb|U31116.1|HSU31116 Human beta-sarcoglycan A3b mRNA, complete cds
          Length = 2037

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 6    caaataaacattcttttacaa 26
            |||||||||||||||||||||
Sbjct: 1579 caaataaacattcttttacaa 1559

>emb|Y09781.1|HSY09781 H.sapiens beta-sarcoglycan gene
          Length = 36159

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     caaataaacattcttttacaa 26
             |||||||||||||||||||||
Sbjct: 21836 caaataaacattcttttacaa 21816

>gb|AC121596.3| Mus musculus BAC clone RP23-299I20 from 14, complete sequence
          Length = 203897

 Score = 40.1 bits (20), Expect = 0.92
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     aaggattgaggaacatgtat 61
              ||||||||||||||||||||
Sbjct: 151448 aaggattgaggaacatgtat 151429

>gb|AC161606.5| Mus musculus BAC clone RP23-232M18 from chromosome 14, complete sequence
          Length = 223037

 Score = 40.1 bits (20), Expect = 0.92
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     aaggattgaggaacatgtat 61
              ||||||||||||||||||||
Sbjct: 124464 aaggattgaggaacatgtat 124483

>gb|AC117377.9| Homo sapiens 12 BAC RP11-406H4 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 107100

 Score = 40.1 bits (20), Expect = 0.92
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 6   caaataaacattcttttaca 25
           ||||||||||||||||||||
Sbjct: 744 caaataaacattcttttaca 763

>gb|AC126616.4| Homo sapiens 12 BAC RP11-149L3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 14790

 Score = 40.1 bits (20), Expect = 0.92
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     caaataaacattcttttaca 25
             ||||||||||||||||||||
Sbjct: 13510 caaataaacattcttttaca 13529

>gb|AC136785.1| Homo sapiens BAC clone RP11-124C9 from 4, complete sequence
          Length = 26713

 Score = 40.1 bits (20), Expect = 0.92
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    aaataaacattcttttacaa 26
            ||||||||||||||||||||
Sbjct: 7165 aaataaacattcttttacaa 7184

>ref|NM_180195.1| Arabidopsis thaliana polygalacturonase AT3G06770 transcript variant
            AT3G06770.3 mRNA, complete cds
          Length = 1749

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 50   aggaacatgtatgatctacagac 72
            |||||||||||||||||| ||||
Sbjct: 1592 aggaacatgtatgatctaaagac 1570

>ref|NM_111557.2| Arabidopsis thaliana polygalacturonase AT3G06770 transcript variant
            AT3G06770.1 mRNA, complete cds
          Length = 1705

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 50   aggaacatgtatgatctacagac 72
            |||||||||||||||||| ||||
Sbjct: 1548 aggaacatgtatgatctaaagac 1526

>ref|NM_180194.2| Arabidopsis thaliana polygalacturonase AT3G06770 transcript variant
            AT3G06770.2 mRNA, complete cds
          Length = 1855

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 50   aggaacatgtatgatctacagac 72
            |||||||||||||||||| ||||
Sbjct: 1698 aggaacatgtatgatctaaagac 1676

>gb|AC023912.5|ATAC023912 Arabidopsis thaliana chromosome III BAC F3E22 genomic sequence,
             complete sequence
          Length = 63767

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 50    aggaacatgtatgatctacagac 72
             |||||||||||||||||| ||||
Sbjct: 31481 aggaacatgtatgatctaaagac 31459

>emb|AL606464.11| Mouse DNA sequence from clone RP23-462P2 on chromosome 13 Contains the
             3' end of the Slc17a1 gene for solute carrier family 17
             vesicular glutamate transporter) member 1, the gene for a
             novel solute carrier family 17 (Slc17a) member, a U1 small
             nuclear ribonucleoprotein 1C (Snrp1c) pseudogene, a H2B
             histone family (H2b) pseudogene, the gene for a novel H2A
             histone family (H2a) member, a novel gene, the gene for
             the ortholog of human secretagogin, EF-hand calcium
             binding protein SCGN and the 3' end of a novel gene,
             complete sequence
          Length = 183698

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     ggatacaaataaacattct 19
             |||||||||||||||||||
Sbjct: 94185 ggatacaaataaacattct 94203

>emb|AL138653.1|ATT32A11 Arabidopsis thaliana DNA chromosome 3, BAC clone T32A11
          Length = 129021

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    acatgtatgatctacagac 72
             |||||||||||||||||||
Sbjct: 32780 acatgtatgatctacagac 32762

>emb|BX511147.12| Zebrafish DNA sequence from clone DKEYP-36E3 in linkage group 25,
             complete sequence
          Length = 150385

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    tttacaatcctcaaaacag 38
             |||||||||||||||||||
Sbjct: 98067 tttacaatcctcaaaacag 98049

>gb|AY128935.1| Arabidopsis thaliana unknown protein (At3g06770) mRNA, complete cds
          Length = 1620

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 50   aggaacatgtatgatctacagac 72
            |||||||||||||||||| ||||
Sbjct: 1503 aggaacatgtatgatctaaagac 1481

>dbj|AK222451.1| Ciona intestinalis mRNA for zinc finger protein, complete cds, clone:
            cidg802k01
          Length = 3134

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 24   caatcctcaaaacagcacaagga 46
            |||||||| ||||||||||||||
Sbjct: 2167 caatcctccaaacagcacaagga 2189

>gb|AY093030.1| Arabidopsis thaliana unknown protein (At3g06770) mRNA, complete cds
          Length = 1756

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 50   aggaacatgtatgatctacagac 72
            |||||||||||||||||| ||||
Sbjct: 1599 aggaacatgtatgatctaaagac 1577

>gb|AC018953.11| Homo sapiens chromosome 8, clone RP11-573J24, complete sequence
          Length = 182712

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     acaaggattgaggaacatg 58
              |||||||||||||||||||
Sbjct: 124406 acaaggattgaggaacatg 124424

>gb|AC069133.6| Homo sapiens BAC clone RP11-579E24 from 8, complete sequence
          Length = 201146

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    acaaggattgaggaacatg 58
             |||||||||||||||||||
Sbjct: 43181 acaaggattgaggaacatg 43199

>emb|BX822462.1|CNS0A7A7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB3ZC04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1681

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 50   aggaacatgtatgatctacagac 72
            |||||||||||||||||| ||||
Sbjct: 1557 aggaacatgtatgatctaaagac 1535

>emb|BX823977.1|CNS0A6PW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH11ZH02 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1317

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 50   aggaacatgtatgatctacagac 72
            |||||||||||||||||| ||||
Sbjct: 1210 aggaacatgtatgatctaaagac 1188

>gb|AY087812.1| Arabidopsis thaliana clone 38575 mRNA, complete sequence
          Length = 1654

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 50   aggaacatgtatgatctacagac 72
            |||||||||||||||||| ||||
Sbjct: 1548 aggaacatgtatgatctaaagac 1526

>gb|AC124989.7| Mus musculus chromosome 1, clone RP24-404O8, complete sequence
          Length = 184453

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 24     caatcctcaaaacagcaca 42
              |||||||||||||||||||
Sbjct: 104588 caatcctcaaaacagcaca 104570

>emb|BX649621.5| Mouse DNA sequence from clone RP23-173F3 on chromosome X, complete
              sequence
          Length = 195039

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     aatcctcaaaacagcacaa 43
              |||||||||||||||||||
Sbjct: 152601 aatcctcaaaacagcacaa 152619

>emb|BX571790.8| Zebrafish DNA sequence from clone CH211-199M3 in linkage group 20,
             complete sequence
          Length = 200944

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 8     aataaacattcttttacaatcct 30
             |||||||||| ||||||||||||
Sbjct: 92500 aataaacatttttttacaatcct 92522

>emb|BX088695.9| Zebrafish DNA sequence from clone DKEY-18E5 in linkage group 25,
             complete sequence
          Length = 205870

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    tttacaatcctcaaaacag 38
             |||||||||||||||||||
Sbjct: 99066 tttacaatcctcaaaacag 99084

>emb|BX537299.8| Mouse DNA sequence from clone RP23-412I17 on chromosome 7, complete
             sequence
          Length = 140968

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 36    cagcacaaggattgaggaacatg 58
             ||||||||||||||||| |||||
Sbjct: 19804 cagcacaaggattgaggtacatg 19782

>gb|AC115893.10| Mus musculus chromosome 1, clone RP24-442I13, complete sequence
          Length = 153053

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   caatcctcaaaacagcaca 42
            |||||||||||||||||||
Sbjct: 1776 caatcctcaaaacagcaca 1758


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,004,644
Number of Sequences: 3902068
Number of extensions: 1004644
Number of successful extensions: 74170
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74117
Number of HSP's gapped (non-prelim): 53
length of query: 86
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 65
effective length of database: 17,151,101,840
effective search space: 1114821619600
effective search space used: 1114821619600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)