ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane ... 36 0.020
2PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane ... 31 0.86
3GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated ... 30 1.1
4MCR_HUMAN (P08235) Mineralocorticoid receptor (MR) 30 1.5
5MCR_AOTNA (Q3YC04) Mineralocorticoid receptor (MR) 30 1.5
6PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane ... 29 2.5
7SNPH_HUMAN (O15079) Syntaphilin 29 2.5
8NRAM2_MOUSE (P49282) Natural resistance-associated macrophage pr... 29 3.3
9MCR_TUPGB (Q29131) Mineralocorticoid receptor (MR) 29 3.3
10MCR_MOUSE (Q8VII8) Mineralocorticoid receptor (MR) 29 3.3
11MCR_RAT (P22199) Mineralocorticoid receptor (MR) 29 3.3
12EGF_RAT (P07522) Pro-epidermal growth factor precursor (EGF) [Co... 29 3.3
13CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alph... 28 4.3
14GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated ... 28 5.6
15Y764_XANAC (Q8PPC2) UPF0102 protein XAC0764 28 5.6
16GLI1_CHICK (P55878) Zinc finger protein GLI1 (GLI) (Fragment) 28 5.6
17MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR) 28 5.6
18ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing prote... 28 5.6
19PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic... 27 9.5
20VIRD2_AGRT5 (P18592) T-DNA border endonuclease virD2 (EC 3.1.-.-) 27 9.5
21CSPG2_RAT (Q9ERB4) Versican core protein precursor (Large fibrob... 27 9.5
22EF1G_TRYCR (P34715) Elongation factor 1-gamma (EF-1-gamma) (eEF-... 27 9.5

>PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane intrinsic|
           protein 2.3) (OsPIP2.3)
          Length = 290

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = -1

Query: 348 YHQYVLRASATKFGSSASF 292
           YHQYVLRASA K GSS+SF
Sbjct: 270 YHQYVLRASAAKLGSSSSF 288



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>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic|
           protein 2.2) (OsPIP2.2)
          Length = 288

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = -1

Query: 348 YHQYVLRASATKFGSSAS 295
           YHQYVLRASA K GS  S
Sbjct: 269 YHQYVLRASAAKLGSYRS 286



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>GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated oncogene|
           homolog)
          Length = 1111

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 12/103 (11%)
 Frame = +1

Query: 7   NRTYTLDVKFPPKLPGCV-----------HDMTVHHPH-HS*TLHGSKH*LTKTHSIGRE 150
           NRT++ +  +  KLPGC            H  TVH P  H    H     L +   +   
Sbjct: 356 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHGPDAHVTKRHRGDGPLPRAQPLSTV 415

Query: 151 NKQQARAASRGKQRRAQRPAESRDPNGGPSVLCHIYSSYASDH 279
             ++ R    G++       ES  P   P       SS +SDH
Sbjct: 416 EPKREREGGSGREESRLTVPESAMPQQSPGA----QSSCSSDH 454



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>MCR_HUMAN (P08235) Mineralocorticoid receptor (MR)|
          Length = 984

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 212 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVALALS 334
           N G+P  +PLSS  S++ +PP+   +      PN V L  S
Sbjct: 256 NVGSPLSSPLSSMKSSISSPPSHCSVKSPVSSPNNVTLRSS 296



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>MCR_AOTNA (Q3YC04) Mineralocorticoid receptor (MR)|
          Length = 984

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 212 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVALALS 334
           N G+P  +PLSS  S++ +PP+   +      PN V L  S
Sbjct: 256 NVGSPLSSPLSSMKSSISSPPSHCSVKSPVSSPNNVTLRSS 296



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>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic|
           protein 2.4)
          Length = 291

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -1

Query: 348 YHQYVLRASATK-FGSSASFGS 286
           YHQ++LRA+A K  GS  SFGS
Sbjct: 265 YHQFILRAAAIKALGSFGSFGS 286



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>SNPH_HUMAN (O15079) Syntaphilin|
          Length = 538

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 121 LTKTHSIGRENKQQARAASRGKQRRAQRPAESRDPNGGPSV 243
           LT+THS+   +   +R  S G +RR   P   RD  G  S+
Sbjct: 38  LTRTHSLMAMSLPGSRRTSAGSRRRTSPPVSVRDAYGTSSL 78



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>NRAM2_MOUSE (P49282) Natural resistance-associated macrophage protein 2 (NRAMP|
           2)
          Length = 568

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
 Frame = +1

Query: 1   KPNRTYTLDVKFPPKLPGCVHDM---------TVHHPHHS*TLHGSKH*LTKTHSIGREN 153
           KP+++  L   F P  PGC              V  PH+   LH +   L K+  + R N
Sbjct: 230 KPSQSQVLRGMFVPSCPGCRTPQVEQAVGIVGAVIMPHNM-YLHSA---LVKSRQVNRAN 285

Query: 154 KQQARAASR 180
           KQ+ R A++
Sbjct: 286 KQEVREANK 294



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>MCR_TUPGB (Q29131) Mineralocorticoid receptor (MR)|
          Length = 977

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 212 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVAL 325
           N G+P  +PLSS  S + +PP+   +      PN V L
Sbjct: 256 NVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVTL 293



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>MCR_MOUSE (Q8VII8) Mineralocorticoid receptor (MR)|
          Length = 978

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 212 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVALALS 334
           N G+P  +PLSS  S + +PP+   +      PN V L  S
Sbjct: 256 NVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVPLRSS 296



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>MCR_RAT (P22199) Mineralocorticoid receptor (MR)|
          Length = 981

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 212 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVALALS 334
           N G+P  +PLSS  S + +PP+   +      PN V L  S
Sbjct: 256 NVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVPLRSS 296



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>EGF_RAT (P07522) Pro-epidermal growth factor precursor (EGF) [Contains:|
           Epidermal growth factor]
          Length = 1133

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 142 GRENKQQARAASRGKQRRAQ--RPAESRDPNGGPSVLCHIYS 261
           G EN+ QA  + R KQRR Q       RDPN   S     Y+
Sbjct: 306 GTENRAQASDSERCKQRRGQCLYSLSERDPNSDSSACAEGYT 347



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>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.1)
          Length = 2254

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 58  VHDMTVHHPHHS*TLHGSKH*LTKTHSIGRENKQQARAASRGKQRRAQRPAESRDPNGGP 237
           VH +  HH HH    H   H    T  + R + +     + G +R    P  +  P+GGP
Sbjct: 491 VHHLVHHHHHH----HHHYHLGNGTLRVPRASPEIQDRDANGSRRLMLPPPSTPTPSGGP 546



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>GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated oncogene)|
           (Oncogene GLI)
          Length = 1106

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 13/104 (12%)
 Frame = +1

Query: 7   NRTYTLDVKFPPKLPGCV-----------HDMTVHHPH-HS*TLHGSKH*LTKTHSIGR- 147
           NRT++ +  +  KLPGC            H  TVH P  H    H     L +  SI   
Sbjct: 353 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHGPDAHVTKRHRGDGPLPRAPSISTV 412

Query: 148 ENKQQARAASRGKQRRAQRPAESRDPNGGPSVLCHIYSSYASDH 279
           E K++       ++ R   P  +  P   P       SS +SDH
Sbjct: 413 EPKREREGGPIREESRLTVPEGAMKPQPSPGA----QSSCSSDH 452



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>Y764_XANAC (Q8PPC2) UPF0102 protein XAC0764|
          Length = 122

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -3

Query: 274 RRRMNCRYGRGQRGLRWGPWILLVFARASAFLGSPPALAA 155
           R R + R+G G   + W     LV A A  FLG+ PALAA
Sbjct: 55  RYRRDDRFGGGAASVDWRKRRKLVLA-AQLFLGAHPALAA 93



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>GLI1_CHICK (P55878) Zinc finger protein GLI1 (GLI) (Fragment)|
          Length = 556

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = +1

Query: 7   NRTYTLDVKFPPKLPGCVHDMTVHHP--HHS*TLHGSKH*LTKTH--SIGRENKQQARAA 174
           NRT++ +  +  K+PGC    T       H  T+HG    +TK H  S+   +   A AA
Sbjct: 365 NRTHSNEKPYICKIPGCTKRYTDPSSLRKHVKTVHGPDAHVTKKHRGSVVPGHALPASAA 424

Query: 175 SRG--KQRRAQRPAESRDPNG 231
            +   +++    PAE R  +G
Sbjct: 425 PQDMKQEKNTNGPAEIRKDDG 445



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>MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)|
          Length = 982

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 212 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLV 319
           N G+P  +PLSS  S++ +PP+   +      PN V
Sbjct: 255 NVGSPLSSPLSSMKSSISSPPSHCSVKSPVSSPNNV 290



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>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID|
           domain-containing protein 1B) (Osa homolog 2) (hOsa2)
           (p250R) (BRG1-binding protein hELD/OSA1)
           (BRG1-associated factor 250b) (BAF250B)
          Length = 2236

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +1

Query: 76  HHPHHS*TLHGSKH*LTKTHSIGR-----ENKQQARAASRGKQRRAQRPAESRDPNGG 234
           HH HH+   H   H L   H++ +     + +QQ +   + +Q++ Q P  + +  GG
Sbjct: 85  HHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGG 142



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>PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic protein 2.5)|
           (OsPIP2.5)
          Length = 283

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -1

Query: 351 LYHQYVLRASATKFGSSAS 295
           LYHQ VLRASA  +GS  S
Sbjct: 263 LYHQIVLRASARGYGSFRS 281



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>VIRD2_AGRT5 (P18592) T-DNA border endonuclease virD2 (EC 3.1.-.-)|
          Length = 447

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 127 KTHSIGRENKQQARAASRGKQRRAQRPAESRDPNGGPS 240
           +T  I R   + A   +  +QRRA+RP    D +GGPS
Sbjct: 315 RTPDIPRAATEAATHTTHDRQRRAKRP---HDDDGGPS 349



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>CSPG2_RAT (Q9ERB4) Versican core protein precursor (Large fibroblast|
            proteoglycan) (Chondroitin sulfate proteoglycan core
            protein 2) (PG-M) (Glial hyaluronate-binding protein)
            (GHAP) (Fragments)
          Length = 2738

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 215  PGTPTEAPLSS---AISTVHTPPTI*RLPKEADEPNLVALAL 331
            P + TE  L++    +ST+H P  +     E D+PN+ A++L
Sbjct: 2027 PVSSTETELNTFFPTVSTLHIPSKLTTASPEIDKPNIEAISL 2068



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>EF1G_TRYCR (P34715) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)|
          Length = 411

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 142 GRENKQQARAASRGKQRRAQRPAESRDPN 228
           GRE  ++A AA+ G +   + P E + PN
Sbjct: 229 GREEAERAAAAADGAEEEDEAPREKKKPN 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,757,109
Number of Sequences: 219361
Number of extensions: 897371
Number of successful extensions: 2598
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2597
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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