Clone Name | rbart60d10 |
---|---|
Clone Library Name | barley_pub |
>PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane intrinsic| protein 2.3) (OsPIP2.3) Length = 290 Score = 36.2 bits (82), Expect = 0.020 Identities = 16/19 (84%), Positives = 17/19 (89%) Frame = -1 Query: 348 YHQYVLRASATKFGSSASF 292 YHQYVLRASA K GSS+SF Sbjct: 270 YHQYVLRASAAKLGSSSSF 288
>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic| protein 2.2) (OsPIP2.2) Length = 288 Score = 30.8 bits (68), Expect = 0.86 Identities = 14/18 (77%), Positives = 14/18 (77%) Frame = -1 Query: 348 YHQYVLRASATKFGSSAS 295 YHQYVLRASA K GS S Sbjct: 269 YHQYVLRASAAKLGSYRS 286
>GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated oncogene| homolog) Length = 1111 Score = 30.4 bits (67), Expect = 1.1 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 12/103 (11%) Frame = +1 Query: 7 NRTYTLDVKFPPKLPGCV-----------HDMTVHHPH-HS*TLHGSKH*LTKTHSIGRE 150 NRT++ + + KLPGC H TVH P H H L + + Sbjct: 356 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHGPDAHVTKRHRGDGPLPRAQPLSTV 415 Query: 151 NKQQARAASRGKQRRAQRPAESRDPNGGPSVLCHIYSSYASDH 279 ++ R G++ ES P P SS +SDH Sbjct: 416 EPKREREGGSGREESRLTVPESAMPQQSPGA----QSSCSSDH 454
>MCR_HUMAN (P08235) Mineralocorticoid receptor (MR)| Length = 984 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +2 Query: 212 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVALALS 334 N G+P +PLSS S++ +PP+ + PN V L S Sbjct: 256 NVGSPLSSPLSSMKSSISSPPSHCSVKSPVSSPNNVTLRSS 296
>MCR_AOTNA (Q3YC04) Mineralocorticoid receptor (MR)| Length = 984 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +2 Query: 212 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVALALS 334 N G+P +PLSS S++ +PP+ + PN V L S Sbjct: 256 NVGSPLSSPLSSMKSSISSPPSHCSVKSPVSSPNNVTLRSS 296
>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic| protein 2.4) Length = 291 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 1/22 (4%) Frame = -1 Query: 348 YHQYVLRASATK-FGSSASFGS 286 YHQ++LRA+A K GS SFGS Sbjct: 265 YHQFILRAAAIKALGSFGSFGS 286
>SNPH_HUMAN (O15079) Syntaphilin| Length = 538 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 121 LTKTHSIGRENKQQARAASRGKQRRAQRPAESRDPNGGPSV 243 LT+THS+ + +R S G +RR P RD G S+ Sbjct: 38 LTRTHSLMAMSLPGSRRTSAGSRRRTSPPVSVRDAYGTSSL 78
>NRAM2_MOUSE (P49282) Natural resistance-associated macrophage protein 2 (NRAMP| 2) Length = 568 Score = 28.9 bits (63), Expect = 3.3 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 9/69 (13%) Frame = +1 Query: 1 KPNRTYTLDVKFPPKLPGCVHDM---------TVHHPHHS*TLHGSKH*LTKTHSIGREN 153 KP+++ L F P PGC V PH+ LH + L K+ + R N Sbjct: 230 KPSQSQVLRGMFVPSCPGCRTPQVEQAVGIVGAVIMPHNM-YLHSA---LVKSRQVNRAN 285 Query: 154 KQQARAASR 180 KQ+ R A++ Sbjct: 286 KQEVREANK 294
>MCR_TUPGB (Q29131) Mineralocorticoid receptor (MR)| Length = 977 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 212 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVAL 325 N G+P +PLSS S + +PP+ + PN V L Sbjct: 256 NVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVTL 293
>MCR_MOUSE (Q8VII8) Mineralocorticoid receptor (MR)| Length = 978 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +2 Query: 212 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVALALS 334 N G+P +PLSS S + +PP+ + PN V L S Sbjct: 256 NVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVPLRSS 296
>MCR_RAT (P22199) Mineralocorticoid receptor (MR)| Length = 981 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +2 Query: 212 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVALALS 334 N G+P +PLSS S + +PP+ + PN V L S Sbjct: 256 NVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVPLRSS 296
>EGF_RAT (P07522) Pro-epidermal growth factor precursor (EGF) [Contains:| Epidermal growth factor] Length = 1133 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = +1 Query: 142 GRENKQQARAASRGKQRRAQ--RPAESRDPNGGPSVLCHIYS 261 G EN+ QA + R KQRR Q RDPN S Y+ Sbjct: 306 GTENRAQASDSERCKQRRGQCLYSLSERDPNSDSSACAEGYT 347
>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit| (Voltage-gated calcium channel alpha subunit Cav3.1) Length = 2254 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/60 (28%), Positives = 25/60 (41%) Frame = +1 Query: 58 VHDMTVHHPHHS*TLHGSKH*LTKTHSIGRENKQQARAASRGKQRRAQRPAESRDPNGGP 237 VH + HH HH H H T + R + + + G +R P + P+GGP Sbjct: 491 VHHLVHHHHHH----HHHYHLGNGTLRVPRASPEIQDRDANGSRRLMLPPPSTPTPSGGP 546
>GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated oncogene)| (Oncogene GLI) Length = 1106 Score = 28.1 bits (61), Expect = 5.6 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 13/104 (12%) Frame = +1 Query: 7 NRTYTLDVKFPPKLPGCV-----------HDMTVHHPH-HS*TLHGSKH*LTKTHSIGR- 147 NRT++ + + KLPGC H TVH P H H L + SI Sbjct: 353 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHGPDAHVTKRHRGDGPLPRAPSISTV 412 Query: 148 ENKQQARAASRGKQRRAQRPAESRDPNGGPSVLCHIYSSYASDH 279 E K++ ++ R P + P P SS +SDH Sbjct: 413 EPKREREGGPIREESRLTVPEGAMKPQPSPGA----QSSCSSDH 452
>Y764_XANAC (Q8PPC2) UPF0102 protein XAC0764| Length = 122 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/40 (45%), Positives = 22/40 (55%) Frame = -3 Query: 274 RRRMNCRYGRGQRGLRWGPWILLVFARASAFLGSPPALAA 155 R R + R+G G + W LV A A FLG+ PALAA Sbjct: 55 RYRRDDRFGGGAASVDWRKRRKLVLA-AQLFLGAHPALAA 93
>GLI1_CHICK (P55878) Zinc finger protein GLI1 (GLI) (Fragment)| Length = 556 Score = 28.1 bits (61), Expect = 5.6 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Frame = +1 Query: 7 NRTYTLDVKFPPKLPGCVHDMTVHHP--HHS*TLHGSKH*LTKTH--SIGRENKQQARAA 174 NRT++ + + K+PGC T H T+HG +TK H S+ + A AA Sbjct: 365 NRTHSNEKPYICKIPGCTKRYTDPSSLRKHVKTVHGPDAHVTKKHRGSVVPGHALPASAA 424 Query: 175 SRG--KQRRAQRPAESRDPNG 231 + +++ PAE R +G Sbjct: 425 PQDMKQEKNTNGPAEIRKDDG 445
>MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)| Length = 982 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +2 Query: 212 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLV 319 N G+P +PLSS S++ +PP+ + PN V Sbjct: 255 NVGSPLSSPLSSMKSSISSPPSHCSVKSPVSSPNNV 290
>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID| domain-containing protein 1B) (Osa homolog 2) (hOsa2) (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated factor 250b) (BAF250B) Length = 2236 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = +1 Query: 76 HHPHHS*TLHGSKH*LTKTHSIGR-----ENKQQARAASRGKQRRAQRPAESRDPNGG 234 HH HH+ H H L H++ + + +QQ + + +Q++ Q P + + GG Sbjct: 85 HHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGG 142
>PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic protein 2.5)| (OsPIP2.5) Length = 283 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/19 (68%), Positives = 14/19 (73%) Frame = -1 Query: 351 LYHQYVLRASATKFGSSAS 295 LYHQ VLRASA +GS S Sbjct: 263 LYHQIVLRASARGYGSFRS 281
>VIRD2_AGRT5 (P18592) T-DNA border endonuclease virD2 (EC 3.1.-.-)| Length = 447 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 127 KTHSIGRENKQQARAASRGKQRRAQRPAESRDPNGGPS 240 +T I R + A + +QRRA+RP D +GGPS Sbjct: 315 RTPDIPRAATEAATHTTHDRQRRAKRP---HDDDGGPS 349
>CSPG2_RAT (Q9ERB4) Versican core protein precursor (Large fibroblast| proteoglycan) (Chondroitin sulfate proteoglycan core protein 2) (PG-M) (Glial hyaluronate-binding protein) (GHAP) (Fragments) Length = 2738 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = +2 Query: 215 PGTPTEAPLSS---AISTVHTPPTI*RLPKEADEPNLVALAL 331 P + TE L++ +ST+H P + E D+PN+ A++L Sbjct: 2027 PVSSTETELNTFFPTVSTLHIPSKLTTASPEIDKPNIEAISL 2068
>EF1G_TRYCR (P34715) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 411 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +1 Query: 142 GRENKQQARAASRGKQRRAQRPAESRDPN 228 GRE ++A AA+ G + + P E + PN Sbjct: 229 GREEAERAAAAADGAEEEDEAPREKKKPN 257 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,757,109 Number of Sequences: 219361 Number of extensions: 897371 Number of successful extensions: 2598 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2474 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2597 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)