Clone Name | rbart60d10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds Length = 1343 Score = 638 bits (322), Expect = e-180 Identities = 344/350 (98%), Gaps = 1/350 (0%) Strand = Plus / Minus Query: 2 aaccgaaccgtacgtacacattggatgtcaaatttcccccc-aagttacctggatgcgta 60 ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| Sbjct: 1225 aaccgaaccgtacgtacacattgcatttcaaatttcccccccaagttacctggatgcgta 1166 Query: 61 catgacatgacagtacatcatcctcatcattcataaacattacatggaagcaaacactga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1165 catgacatgacagtacatcatcctcatcattcataaacattacatggaagcaaacactga 1106 Query: 121 ctgacgaagacacactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagccga 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1105 ctgacgaagacacactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagcaga 1046 Query: 181 ggaaagcagaggcgcgcgcaaagaccagcagaatccagggaccccaacggaggcccctct 240 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1045 ggaaagcagagacgcgcgcaaagaccagcagaatccagggacccgaacggaggcccctct 986 Query: 241 gtcctctgccatatctacagttcatacgcctccgaccatctagcggctgccgaaggaggc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 985 gtcctctgccatatctacagttcatacgcctccgaccatctagcggctgccgaaggaggc 926 Query: 301 agacgagccgaacttggtggcgctggccctcagcacgtactggtggtaca 350 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 925 agacgagccgaacttggtggcgctggccctcagcacgtactggtggtaca 876
>gb|AY243802.1| Zea mays aquaporin (PIP2-5) mRNA, complete cds Length = 1104 Score = 83.8 bits (42), Expect = 3e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 292 gaaggaggcagacgagccgaacttggtggcgctggccctcagcacgtactggtggtac 349 ||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||| Sbjct: 852 gaaggaggcagacgatcccagcttggcggcgctggccctcagcacgtactggtggtac 795
>gb|AF130975.1|AF130975 Zea mays plasma membrane intrinsic protein (pip2-5) mRNA, complete cds Length = 1207 Score = 83.8 bits (42), Expect = 3e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 292 gaaggaggcagacgagccgaacttggtggcgctggccctcagcacgtactggtggtac 349 ||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||| Sbjct: 907 gaaggaggcagacgatcccagcttggcggcgctggccctcagcacgtactggtggtac 850
>gb|BT018182.1| Zea mays clone EL01N0557H10.c mRNA sequence Length = 1215 Score = 73.8 bits (37), Expect = 3e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||| |||||||||||||||||||||||||||||||||||| Sbjct: 940 ccgagcttggtggcgctggccctcagcacgtactggtggta 900
>gb|AF326494.1|AF326494 Zea mays plasma membrane integral protein ZmPIP2-4 mRNA, complete cds Length = 1171 Score = 73.8 bits (37), Expect = 3e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||| |||||||||||||||||||||||||||||||||||| Sbjct: 932 ccgagcttggtggcgctggccctcagcacgtactggtggta 892
>ref|XM_466869.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1214 Score = 65.9 bits (33), Expect = 8e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||| ||||| |||||||||||||||||||||||||||||| Sbjct: 912 ccgagcttggcggcgctggccctcagcacgtactggtggta 872
>ref|XM_473219.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 65.9 bits (33), Expect = 8e-08 Identities = 51/57 (89%) Strand = Plus / Minus Query: 292 gaaggaggcagacgagccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||||||| || ||||||| ||||| ||||||||||||||| |||||||||||||| Sbjct: 864 gaaggaggaggaagagccgagcttggcggcgctggccctcaggacgtactggtggta 808
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 65.9 bits (33), Expect = 8e-08 Identities = 51/57 (89%) Strand = Plus / Minus Query: 292 gaaggaggcagacgagccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||||||| || ||||||| ||||| ||||||||||||||| |||||||||||||| Sbjct: 26074856 gaaggaggaggaagagccgagcttggcggcgctggccctcaggacgtactggtggta 26074800
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 8e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||| ||||| |||||||||||||||||||||||||||||| Sbjct: 25184693 ccgagcttggcggcgctggccctcagcacgtactggtggta 25184653
>gb|AF326493.1|AF326493 Zea mays plasma membrane integral protein ZmPIP2-3 mRNA, complete cds Length = 1156 Score = 65.9 bits (33), Expect = 8e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||| ||||||||||||||| |||||||||||||||||||| Sbjct: 922 ccgagcttggtggcgctggctctcagcacgtactggtggta 882
>gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrinsic protein 2 (PIP2) mRNA, complete cds Length = 1235 Score = 65.9 bits (33), Expect = 8e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||| ||||| |||||||||||||||||||||||||||||| Sbjct: 886 ccgagcttggcggcgctggccctcagcacgtactggtggta 846
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1469H02 Length = 136602 Score = 65.9 bits (33), Expect = 8e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||| ||||| |||||||||||||||||||||||||||||| Sbjct: 85086 ccgagcttggcggcgctggccctcagcacgtactggtggta 85046
>dbj|AK061782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E03, full insert sequence Length = 1214 Score = 65.9 bits (33), Expect = 8e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||| ||||| |||||||||||||||||||||||||||||| Sbjct: 912 ccgagcttggcggcgctggccctcagcacgtactggtggta 872
>gb|AY109332.1| Zea mays CL502_5 mRNA sequence Length = 1969 Score = 65.9 bits (33), Expect = 8e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||| ||||||||||||||| |||||||||||||||||||| Sbjct: 350 ccgagcttggtggcgctggctctcagcacgtactggtggta 310
>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence Length = 163039 Score = 65.9 bits (33), Expect = 8e-08 Identities = 51/57 (89%) Strand = Plus / Minus Query: 292 gaaggaggcagacgagccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||||||| || ||||||| ||||| ||||||||||||||| |||||||||||||| Sbjct: 109183 gaaggaggaggaagagccgagcttggcggcgctggccctcaggacgtactggtggta 109127
>dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin, complete cds Length = 1318 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||| ||||| |||||||||||||||||| ||||||||||| Sbjct: 974 ccgagcttggcggcgctggccctcagcacatactggtggta 934
>dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd Length = 1251 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348 |||| ||||| |||||||||||||||||| ||||||||||| Sbjct: 894 ccgagcttggcggcgctggccctcagcacatactggtggta 854
>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence Length = 218656 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 acattacatggaagcaaacac 117 ||||||||||||||||||||| Sbjct: 152543 acattacatggaagcaaacac 152563
>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21 Contains the 3' end of the gene for a novel protein similar to sorting nexin 7 (SNX7), the TSCOT gene for thymic stromal co-transporter, a pseudogene similar to Mus musculus major urinary proteins and a CpG island, complete sequence Length = 141659 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 gtcctctgccatatctacagt 261 ||||||||||||||||||||| Sbjct: 70594 gtcctctgccatatctacagt 70574
>emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 in linkage group 7, complete sequence Length = 150136 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 acagtacatcatcctcatcat 90 ||||||||||||||||||||| Sbjct: 125640 acagtacatcatcctcatcat 125660
>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14, complete sequence Length = 157039 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 acagtacatcatcctcatcat 90 ||||||||||||||||||||| Sbjct: 128445 acagtacatcatcctcatcat 128425
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 cagtacatcatcctcatcatt 91 ||||||||||||||||||||| Sbjct: 3820278 cagtacatcatcctcatcatt 3820258
>emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chromosome 16, complete sequence Length = 202976 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gaccagcagaatccagggac 222 |||||||||||||||||||| Sbjct: 160045 gaccagcagaatccagggac 160064
>emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, complete sequence Length = 34107 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 agtacatcatcctcatcatt 91 |||||||||||||||||||| Sbjct: 2425 agtacatcatcctcatcatt 2406
>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence Length = 151902 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 aaatttccccccaagttacc 50 |||||||||||||||||||| Sbjct: 77542 aaatttccccccaagttacc 77561
>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence Length = 141316 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gaccagcagaatccagggac 222 |||||||||||||||||||| Sbjct: 79236 gaccagcagaatccagggac 79217
>emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chromosome 4, complete sequence Length = 202365 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gaccagcagaatccagggac 222 |||||||||||||||||||| Sbjct: 57930 gaccagcagaatccagggac 57949
>gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome 16, complete sequence Length = 180800 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gaccagcagaatccagggac 222 |||||||||||||||||||| Sbjct: 46705 gaccagcagaatccagggac 46724 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,603,560 Number of Sequences: 3902068 Number of extensions: 2603560 Number of successful extensions: 54793 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54715 Number of HSP's gapped (non-prelim): 77 length of query: 351 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 329 effective length of database: 17,147,199,772 effective search space: 5641428724988 effective search space used: 5641428724988 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)