ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin ... 638 e-180
2gb|AY243802.1| Zea mays aquaporin (PIP2-5) mRNA, complete cds 84 3e-13
3gb|AF130975.1|AF130975 Zea mays plasma membrane intrinsic protei... 84 3e-13
4gb|BT018182.1| Zea mays clone EL01N0557H10.c mRNA sequence 74 3e-10
5gb|AF326494.1|AF326494 Zea mays plasma membrane integral protein... 74 3e-10
6ref|XM_466869.1| Oryza sativa (japonica cultivar-group), mRNA 66 8e-08
7ref|XM_473219.1| Oryza sativa (japonica cultivar-group), predic... 66 8e-08
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
10gb|AF326493.1|AF326493 Zea mays plasma membrane integral protein... 66 8e-08
11gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrins... 66 8e-08
12dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
13dbj|AK061782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
14gb|AY109332.1| Zea mays CL502_5 mRNA sequence 66 8e-08
15emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4,... 66 8e-08
16dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin,... 58 2e-05
17dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd 58 2e-05
18gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, co... 42 1.2
19emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on ch... 42 1.2
20emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 i... 42 1.2
21emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 i... 42 1.2
22gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 42 1.2
23emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chr... 40 4.7
24emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, comple... 40 4.7
25gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complet... 40 4.7
26gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, co... 40 4.7
27emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chr... 40 4.7
28gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome... 40 4.7

>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds
          Length = 1343

 Score =  638 bits (322), Expect = e-180
 Identities = 344/350 (98%), Gaps = 1/350 (0%)
 Strand = Plus / Minus

                                                                        
Query: 2    aaccgaaccgtacgtacacattggatgtcaaatttcccccc-aagttacctggatgcgta 60
            ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 1225 aaccgaaccgtacgtacacattgcatttcaaatttcccccccaagttacctggatgcgta 1166

                                                                        
Query: 61   catgacatgacagtacatcatcctcatcattcataaacattacatggaagcaaacactga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 catgacatgacagtacatcatcctcatcattcataaacattacatggaagcaaacactga 1106

                                                                        
Query: 121  ctgacgaagacacactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagccga 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1105 ctgacgaagacacactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagcaga 1046

                                                                        
Query: 181  ggaaagcagaggcgcgcgcaaagaccagcagaatccagggaccccaacggaggcccctct 240
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1045 ggaaagcagagacgcgcgcaaagaccagcagaatccagggacccgaacggaggcccctct 986

                                                                        
Query: 241  gtcctctgccatatctacagttcatacgcctccgaccatctagcggctgccgaaggaggc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985  gtcctctgccatatctacagttcatacgcctccgaccatctagcggctgccgaaggaggc 926

                                                              
Query: 301  agacgagccgaacttggtggcgctggccctcagcacgtactggtggtaca 350
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925  agacgagccgaacttggtggcgctggccctcagcacgtactggtggtaca 876



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>gb|AY243802.1| Zea mays aquaporin (PIP2-5) mRNA, complete cds
          Length = 1104

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                     
Query: 292 gaaggaggcagacgagccgaacttggtggcgctggccctcagcacgtactggtggtac 349
           ||||||||||||||| || | ||||| |||||||||||||||||||||||||||||||
Sbjct: 852 gaaggaggcagacgatcccagcttggcggcgctggccctcagcacgtactggtggtac 795



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>gb|AF130975.1|AF130975 Zea mays plasma membrane intrinsic protein (pip2-5) mRNA, complete
           cds
          Length = 1207

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                     
Query: 292 gaaggaggcagacgagccgaacttggtggcgctggccctcagcacgtactggtggtac 349
           ||||||||||||||| || | ||||| |||||||||||||||||||||||||||||||
Sbjct: 907 gaaggaggcagacgatcccagcttggcggcgctggccctcagcacgtactggtggtac 850



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>gb|BT018182.1| Zea mays clone EL01N0557H10.c mRNA sequence
          Length = 1215

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                    
Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348
           |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 940 ccgagcttggtggcgctggccctcagcacgtactggtggta 900



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>gb|AF326494.1|AF326494 Zea mays plasma membrane integral protein ZmPIP2-4 mRNA, complete
           cds
          Length = 1171

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                    
Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348
           |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 932 ccgagcttggtggcgctggccctcagcacgtactggtggta 892



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>ref|XM_466869.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1214

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348
           |||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 912 ccgagcttggcggcgctggccctcagcacgtactggtggta 872



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>ref|XM_473219.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                    
Query: 292 gaaggaggcagacgagccgaacttggtggcgctggccctcagcacgtactggtggta 348
           ||||||||  || ||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 864 gaaggaggaggaagagccgagcttggcggcgctggccctcaggacgtactggtggta 808



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 292      gaaggaggcagacgagccgaacttggtggcgctggccctcagcacgtactggtggta 348
                ||||||||  || ||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 26074856 gaaggaggaggaagagccgagcttggcggcgctggccctcaggacgtactggtggta 26074800



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                         
Query: 308      ccgaacttggtggcgctggccctcagcacgtactggtggta 348
                |||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 25184693 ccgagcttggcggcgctggccctcagcacgtactggtggta 25184653



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>gb|AF326493.1|AF326493 Zea mays plasma membrane integral protein ZmPIP2-3 mRNA, complete
           cds
          Length = 1156

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348
           |||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 922 ccgagcttggtggcgctggctctcagcacgtactggtggta 882



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>gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrinsic protein 2 (PIP2) mRNA,
           complete cds
          Length = 1235

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348
           |||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 886 ccgagcttggcggcgctggccctcagcacgtactggtggta 846



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>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1469H02
          Length = 136602

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                      
Query: 308   ccgaacttggtggcgctggccctcagcacgtactggtggta 348
             |||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 85086 ccgagcttggcggcgctggccctcagcacgtactggtggta 85046



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>dbj|AK061782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E03, full
           insert sequence
          Length = 1214

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348
           |||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 912 ccgagcttggcggcgctggccctcagcacgtactggtggta 872



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>gb|AY109332.1| Zea mays CL502_5 mRNA sequence
          Length = 1969

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348
           |||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 350 ccgagcttggtggcgctggctctcagcacgtactggtggta 310



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>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
              complete sequence
          Length = 163039

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                       
Query: 292    gaaggaggcagacgagccgaacttggtggcgctggccctcagcacgtactggtggta 348
              ||||||||  || ||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 109183 gaaggaggaggaagagccgagcttggcggcgctggccctcaggacgtactggtggta 109127



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>dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin, complete cds
          Length = 1318

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348
           |||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 974 ccgagcttggcggcgctggccctcagcacatactggtggta 934



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>dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd
          Length = 1251

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 308 ccgaacttggtggcgctggccctcagcacgtactggtggta 348
           |||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 894 ccgagcttggcggcgctggccctcagcacatactggtggta 854



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>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence
          Length = 218656

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 97     acattacatggaagcaaacac 117
              |||||||||||||||||||||
Sbjct: 152543 acattacatggaagcaaacac 152563



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>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21
             Contains the 3' end of the gene for a novel protein
             similar to sorting nexin 7 (SNX7), the TSCOT gene for
             thymic stromal co-transporter, a pseudogene similar to Mus
             musculus major urinary proteins and a CpG island, complete
             sequence
          Length = 141659

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 241   gtcctctgccatatctacagt 261
             |||||||||||||||||||||
Sbjct: 70594 gtcctctgccatatctacagt 70574



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>emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 in linkage group 7,
              complete sequence
          Length = 150136

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     acagtacatcatcctcatcat 90
              |||||||||||||||||||||
Sbjct: 125640 acagtacatcatcctcatcat 125660



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>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14,
              complete sequence
          Length = 157039

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 70     acagtacatcatcctcatcat 90
              |||||||||||||||||||||
Sbjct: 128445 acagtacatcatcctcatcat 128425



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 71      cagtacatcatcctcatcatt 91
               |||||||||||||||||||||
Sbjct: 3820278 cagtacatcatcctcatcatt 3820258



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>emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chromosome 16, complete
              sequence
          Length = 202976

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    gaccagcagaatccagggac 222
              ||||||||||||||||||||
Sbjct: 160045 gaccagcagaatccagggac 160064



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>emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, complete sequence
          Length = 34107

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 72   agtacatcatcctcatcatt 91
            ||||||||||||||||||||
Sbjct: 2425 agtacatcatcctcatcatt 2406



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>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence
          Length = 151902

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aaatttccccccaagttacc 50
             ||||||||||||||||||||
Sbjct: 77542 aaatttccccccaagttacc 77561



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>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence
          Length = 141316

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   gaccagcagaatccagggac 222
             ||||||||||||||||||||
Sbjct: 79236 gaccagcagaatccagggac 79217



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>emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chromosome 4, complete
             sequence
          Length = 202365

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   gaccagcagaatccagggac 222
             ||||||||||||||||||||
Sbjct: 57930 gaccagcagaatccagggac 57949



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>gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome 16, complete sequence
          Length = 180800

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   gaccagcagaatccagggac 222
             ||||||||||||||||||||
Sbjct: 46705 gaccagcagaatccagggac 46724


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,603,560
Number of Sequences: 3902068
Number of extensions: 2603560
Number of successful extensions: 54793
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54715
Number of HSP's gapped (non-prelim): 77
length of query: 351
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 329
effective length of database: 17,147,199,772
effective search space: 5641428724988
effective search space used: 5641428724988
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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