ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart60d09 |
|---|---|
| Clone Library Name | barley_pub |
>AKR2_ARATH (Q9SAR5) Ankyrin repeat domain-containing protein 2 (AtAKR2)| Length = 342 Score = 50.1 bits (118), Expect = 1e-06 Identities = 24/30 (80%), Positives = 27/30 (90%) Frame = -2 Query: 366 QNMDGKTPIDVAKLNNQDEVLKLLEKDVFL 277 QN+D KTPIDVAKLN+Q EV+KLLEKD FL Sbjct: 313 QNLDEKTPIDVAKLNSQLEVVKLLEKDAFL 342
>FANK1_BOVIN (Q6B858) Fibronectin type 3 and ankyrin repeat domains protein 1| (GV14) Length = 345 Score = 31.2 bits (69), Expect = 0.65 Identities = 13/24 (54%), Positives = 20/24 (83%) Frame = -2 Query: 366 QNMDGKTPIDVAKLNNQDEVLKLL 295 ++ DGKTP+ VA LNN +E+++LL Sbjct: 274 KDKDGKTPLMVAVLNNHEELVQLL 297
>FKB59_DROME (Q9VL78) FK506-binding protein 59 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) (dFKBP59) Length = 439 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = -3 Query: 179 YSLCKNILPVLAGLQADWPRLELHVTVYGDLCIVHFVSVDFTRVIQDCTQELFLELRRV 3 Y+ CKNILP + +++ V + ++ + H S D Q+C + L L+ V Sbjct: 275 YTKCKNILPTTVHTNEEVKKIK--VATHSNIALCHQKSNDHFEAKQECNEVLALDKNNV 331
>FANK1_RAT (Q66H07) Fibronectin type 3 and ankyrin repeat domains 1 protein| Length = 344 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/24 (50%), Positives = 20/24 (83%) Frame = -2 Query: 366 QNMDGKTPIDVAKLNNQDEVLKLL 295 ++ DGKTP+ VA LNN +++++LL Sbjct: 274 RDKDGKTPLMVAVLNNHEQLVQLL 297
>FANK1_MOUSE (Q9DAM9) Fibronectin type 3 and ankyrin repeat domains 1 protein| (Germ cell-specific gene 1 protein) (GSG1) Length = 344 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/24 (50%), Positives = 20/24 (83%) Frame = -2 Query: 366 QNMDGKTPIDVAKLNNQDEVLKLL 295 ++ DGKTP+ VA LNN +++++LL Sbjct: 274 KDKDGKTPLMVAVLNNHEQLVQLL 297
>GP158_MOUSE (Q8C419) Probable G-protein coupled receptor 158 precursor| Length = 1200 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -3 Query: 209 GWIVILESAFYSLCKNILPVLAGL 138 GW+V L +AFY L N++P G+ Sbjct: 280 GWLVTLSAAFYGLQPNLVPEFRGV 303
>ABF2_BACOV (Q59219) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) (Arabinosidase| 2) Length = 514 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = -2 Query: 306 LKLLEKDVFL*IASLGSHEETWPSSCFTSLWHWLD 202 +K DVF + L WP CF +HW+D Sbjct: 68 IKGYRTDVFNALKDLSVPVLRWPGGCFADEYHWMD 102
>FANK1_HUMAN (Q8TC84) Fibronectin type 3 and ankyrin repeat domains protein 1| Length = 345 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/24 (50%), Positives = 20/24 (83%) Frame = -2 Query: 366 QNMDGKTPIDVAKLNNQDEVLKLL 295 ++ +GKTP+ VA LNN +E+++LL Sbjct: 274 KDRNGKTPLMVAVLNNHEELVQLL 297
>ZN326_PONPY (Q5RCA4) Zinc finger protein 326| Length = 579 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = -2 Query: 351 KTPIDVAKLNNQDEVLKLLEKDV 283 KT I + NNQ EV+K++EKDV Sbjct: 367 KTSIRKQQTNNQTEVVKIIEKDV 389
>ZN326_HUMAN (Q5BKZ1) Zinc finger protein 326| Length = 582 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = -2 Query: 351 KTPIDVAKLNNQDEVLKLLEKDV 283 KT I + NNQ EV+K++EKDV Sbjct: 367 KTSIRKQQTNNQTEVVKIIEKDV 389
>NU5H_NYCOV (Q5DUY0) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 1849 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = -3 Query: 239 RHHVLHRFGIGWIVILESAFYSLCKN-ILPVLAGLQADWPRLELHVTVYGDL 87 R L+RFG W+ YSLC N LP L L P + ++++ G+L Sbjct: 1387 RTFALNRFGDLWMFTASIEIYSLCHNDALPTLFAL---LPYAQFNLSILGNL 1435
>CBS2_YEAST (P14905) Cytochrome B translational activator protein CBS2| Length = 389 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/55 (27%), Positives = 28/55 (50%) Frame = -3 Query: 188 SAFYSLCKNILPVLAGLQADWPRLELHVTVYGDLCIVHFVSVDFTRVIQDCTQEL 24 +AFY L + I + +G+ +D +LHV + DL + +++ CT+ L Sbjct: 209 NAFYKLFREISRLRSGIGSDLVSFDLHVHGFQDLFFTELEKL----ILESCTEPL 259
>YM8M_YEAST (Q03263) Hypothetical transport protein YMR279C| Length = 540 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 230 VLHRFGIGWIVILESAFYSLCKNILPVLAGLQADW 126 V + FGI + L A+YS+ N+ + GL DW Sbjct: 234 VFYAFGIATFLSLLMAWYSIPNNVPTNIHGLSMDW 268
>Y1272_METMA (Q8PXE8) UPF0245 protein MM1272| Length = 380 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -2 Query: 354 GKTPIDVAKLNNQDEVLKLLEK 289 G TPI VAKL DEVL LE+ Sbjct: 343 GGTPISVAKLKKGDEVLVRLEE 364
>VL3_REOVJ (P17377) Minor core protein lambda-3| Length = 1267 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = +1 Query: 40 SWITLVKSTETKWTIHKSPYTVTCSSNLGQSACR 141 SWI+L++ T+W + + CSS G + R Sbjct: 901 SWISLIRPLMTRWMVANGYVSERCSSIFGNADYR 934
>VL3_REOVD (P17378) Minor core protein lambda-3| Length = 1267 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = +1 Query: 40 SWITLVKSTETKWTIHKSPYTVTCSSNLGQSACR 141 SWI+L++ T+W + T CS+ G + R Sbjct: 901 SWISLIRPLMTRWMVANGYVTDRCSTVFGNADYR 934
>YNH6_SCHPO (Q96WW2) Hypothetical TPR repeat-containing protein SPBC32H8.06| Length = 383 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -3 Query: 101 VYGDLCIVHFVSVDFTRVIQDCTQELFL 18 VY D + H +T+V+ DCT L + Sbjct: 43 VYADSSLTHLRKKSYTKVVHDCTYALVI 70
>PEBA_PROMM (Q7V586) 15,16-dihydrobiliverdin:ferredoxin oxidoreductase (EC| 1.3.7.2) Length = 249 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +1 Query: 10 RNSKNNSWVQSWITLVKSTETKWTIHK 90 RN K NSW++SW+ V +W + + Sbjct: 31 RNEKKNSWIRSWLWQVPGFR-RWRVSR 56
>ANKR7_HUMAN (Q92527) Ankyrin repeat domain-containing protein 7| (Testis-specific protein TSA806) Length = 201 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%) Frame = -2 Query: 366 QNMDGKTPIDVAKLNNQDEVLK-LLEK 289 +N DG TP+ VA +NN +++K LLEK Sbjct: 101 KNKDGYTPLLVAVINNNPKMVKFLLEK 127 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,087,074 Number of Sequences: 219361 Number of extensions: 971909 Number of successful extensions: 2211 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2171 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2211 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
