ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin) 31 0.62
2MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb) 31 0.81
3CADH1_CHICK (P08641) Epithelial-cadherin precursor (E-cadherin) ... 27 9.0

>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 398 EAQGPGDGVRAGAAEYIRDGEEPPGERDAAGATTK*RRPRQ 276
           E   PG+ V   AAE      EP G  DAAG      RP++
Sbjct: 281 EGHSPGESVEDAAAEEAAGTREPEGSEDAAGEDGDQGRPQE 321



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>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)|
          Length = 2567

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -3

Query: 398 EAQGPGDGVRAGAAEYIRDGEEP 330
           +AQGPG+GVR G AE  ++G EP
Sbjct: 269 QAQGPGEGVRPGKAE--KEGAEP 289



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>CADH1_CHICK (P08641) Epithelial-cadherin precursor (E-cadherin) (Cadherin-1)|
           (Liver cell adhesion molecule) (L-CAM)
          Length = 887

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 310 PVLPPSDDVRDNMH 269
           P+LPP DD+RDN++
Sbjct: 744 PLLPPEDDMRDNVY 757


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,258,737
Number of Sequences: 219361
Number of extensions: 1102554
Number of successful extensions: 2743
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2743
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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